Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:20:38 (11292): wrapper (7.7.26015): starting
23:20:38 (11292): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:20:38] Arguments: --nthreads 8
[2025-06-04 23:20:38] Threads: 8
[2025-06-04 23:20:38] Checking for CVMFS
[2025-06-04 23:20:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:20:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:20:39] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:20:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:20:40] 2.11.2.0 5987 33728 94320 146795 0 16 25117781 25165825 3907 130560 0 17756089 99.796 19138774 2126 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:20:40] CVMFS is ok
[2025-06-04 23:20:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:20:40] Checking for apptainer binary...
[2025-06-04 23:20:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:20:40] Running /usr/bin/apptainer --version
[2025-06-04 23:20:40] apptainer version 1.3.2-1.el7
[2025-06-04 23:20:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:51:05] cg-vwn288.simple-grid.lan
[2025-06-04 23:51:05] apptainer works
[2025-06-04 23:51:05] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:51:05] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:51:06] Starting ATLAS job with PandaID=6678850665
[2025-06-04 23:51:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:58:38]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:58:38] 2025-06-05 01:51:28,072 | INFO     | mean y: 2427720.1428571427
[2025-06-05 04:58:38] 2025-06-05 01:51:28,072 | INFO     | -- intersect: -54936260519.48117
[2025-06-05 04:58:38] 2025-06-05 01:51:28,072 | INFO     | intersect: -54936260519.48117
[2025-06-05 04:58:38] 2025-06-05 01:51:28,073 | INFO     | chi2: 6.268835829525772
[2025-06-05 04:58:38] 2025-06-05 01:51:28,073 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,075 | INFO     | sum of deviations: 106834218430.00002
[2025-06-05 04:58:38] 2025-06-05 01:51:28,075 | INFO     | mean x: 1749081207.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,075 | INFO     | mean y: 2425963.3105022833
[2025-06-05 04:58:38] 2025-06-05 01:51:28,075 | INFO     | -- intersect: -57372037527.52092
[2025-06-05 04:58:38] 2025-06-05 01:51:28,076 | INFO     | intersect: -57372037527.52092
[2025-06-05 04:58:38] 2025-06-05 01:51:28,076 | INFO     | chi2: 6.278592958617331
[2025-06-05 04:58:38] 2025-06-05 01:51:28,076 | INFO     | current chi2=6.278592958617331 (change=-0.15564499305602886 %)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,076 | INFO     | right removable region: 218
[2025-06-05 04:58:38] 2025-06-05 01:51:28,077 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,078 | INFO     | sum of deviations: 33013352805.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,079 | INFO     | mean x: 1749081512.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,079 | INFO     | mean y: 2478764.8173515983
[2025-06-05 04:58:38] 2025-06-05 01:51:28,079 | INFO     | -- intersect: -17727081701.36924
[2025-06-05 04:58:38] 2025-06-05 01:51:28,079 | INFO     | intersect: -17727081701.36924
[2025-06-05 04:58:38] 2025-06-05 01:51:28,079 | INFO     | chi2: 1.4869800356387437
[2025-06-05 04:58:38] 2025-06-05 01:51:28,080 | INFO     | current chi2=1.4869800356387437 (change=76.27980575539762 %)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,080 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,082 | INFO     | sum of deviations: -5282334192.499999
[2025-06-05 04:58:38] 2025-06-05 01:51:28,082 | INFO     | mean x: 1749081664.5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,082 | INFO     | mean y: 2505378.640186916
[2025-06-05 04:58:38] 2025-06-05 01:51:28,082 | INFO     | -- intersect: 3042870209.980184
[2025-06-05 04:58:38] 2025-06-05 01:51:28,082 | INFO     | intersect: 3042870209.980184
[2025-06-05 04:58:38] 2025-06-05 01:51:28,083 | INFO     | chi2: 0.0827699267524417
[2025-06-05 04:58:38] 2025-06-05 01:51:28,083 | INFO     | current chi2=0.0827699267524417 (change=94.43368943975852 %)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,083 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,085 | INFO     | sum of deviations: -13460046499.999996
[2025-06-05 04:58:38] 2025-06-05 01:51:28,085 | INFO     | mean x: 1749081817.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,085 | INFO     | mean y: 2511359.5980861243
[2025-06-05 04:58:38] 2025-06-05 01:51:28,086 | INFO     | -- intersect: 8319178987.7607
[2025-06-05 04:58:38] 2025-06-05 01:51:28,086 | INFO     | intersect: 8319178987.7607
[2025-06-05 04:58:38] 2025-06-05 01:51:28,086 | INFO     | chi2: 0.01637744854581754
[2025-06-05 04:58:38] 2025-06-05 01:51:28,086 | INFO     | current chi2=0.01637744854581754 (change=80.21328616757003 %)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,087 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,088 | INFO     | sum of deviations: -13780696873.500002
[2025-06-05 04:58:38] 2025-06-05 01:51:28,088 | INFO     | mean x: 1749081969.5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | mean y: 2511601.4852941176
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | -- intersect: 9158871452.036146
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | intersect: 9158871452.036146
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | chi2: 0.014871122125593505
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | current chi2=0.014871122125593505 (change=9.197564663445206 %)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,089 | INFO     | left removable region: 40
[2025-06-05 04:58:38] 2025-06-05 01:51:28,090 | INFO     | sum of square deviations: 1748737904.5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,091 | INFO     | sum of deviations: -9563506067.999996
[2025-06-05 04:58:38] 2025-06-05 01:51:28,091 | INFO     | mean x: 1749082396.5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,091 | INFO     | mean y: 2508137.853932584
[2025-06-05 04:58:38] 2025-06-05 01:51:28,092 | INFO     | -- intersect: 9567898165.322012
[2025-06-05 04:58:38] 2025-06-05 01:51:28,092 | INFO     | intersect: 9567898165.322012
[2025-06-05 04:58:38] 2025-06-05 01:51:28,092 | INFO     | chi2: 0.013727473365450903
[2025-06-05 04:58:38] 2025-06-05 01:51:28,092 | INFO     | -- intersect: 9567898165.322012
[2025-06-05 04:58:38] 2025-06-05 01:51:28,092 | INFO     | current memory leak: -5.47 B/s (using 178 data points, chi2=0.01)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,093 | INFO     | ..............................
[2025-06-05 04:58:38] 2025-06-05 01:51:28,093 | INFO     | . Timing measurements:
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . get job = 0 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . initial setup = 11 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . payload setup = 147 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . stage-in = 0 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . payload execution = 13788 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . stage-out = 2 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | . log creation = 0 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,094 | INFO     | ..............................
[2025-06-05 04:58:38] 2025-06-05 01:51:28,308 | INFO     | 
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | job summary report
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | --------------------------------------------------
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | PanDA job id: 6678850665
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | task id: 45006595
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | errors: (none)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:58:38] 2025-06-05 01:51:28,309 | INFO     | pilot state: finished 
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | transexitcode: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | exeerrorcode: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | exeerrordiag: 
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | exitcode: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | exitmsg: OK
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | cpuconsumptiontime: 49518 s
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | nevents: 400
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | neventsw: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | pid: 10228
[2025-06-05 04:58:38] 2025-06-05 01:51:28,310 | INFO     | pgrp: 10228
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | corecount: 8
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | event service: False
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | sizes: {0: 2396462, 1: 2397147, 2: 2397346, 13: 2397346, 23: 2397402, 34: 2397430, 45: 2397586, 56: 2397614, 66: 2397642, 77: 2397670, 88: 2397726, 93: 2398240, 99
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | --------------------------------------------------
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | 
[2025-06-05 04:58:38] 2025-06-05 01:51:28,311 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 04:58:38] 2025-06-05 01:51:28,592 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,594 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,595 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:58:38] 2025-06-05 01:51:28,596 | INFO     | job 6678850665 has completed (purged errors)
[2025-06-05 04:58:38] 2025-06-05 01:51:28,596 | INFO     | overall cleanup function is called
[2025-06-05 04:58:38] 2025-06-05 01:51:29,605 | INFO     | --- collectZombieJob: --- 10, [10228]
[2025-06-05 04:58:38] 2025-06-05 01:51:29,606 | INFO     | zombie collector waiting for pid 10228
[2025-06-05 04:58:38] 2025-06-05 01:51:29,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:58:38] 2025-06-05 01:51:29,606 | INFO     | collected zombie processes
[2025-06-05 04:58:38] 2025-06-05 01:51:29,606 | INFO     | will attempt to kill all subprocesses of pid=10228
[2025-06-05 04:58:38] 2025-06-05 01:51:29,747 | INFO     | process IDs to be killed: [10228] (in reverse order)
[2025-06-05 04:58:38] 2025-06-05 01:51:29,910 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:58:38] 2025-06-05 01:51:29,911 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:58:38] 2025-06-05 01:51:29,914 | INFO     | did not find any defunct processes belonging to 10228
[2025-06-05 04:58:38] 2025-06-05 01:51:29,916 | INFO     | did not find any defunct processes belonging to 10228
[2025-06-05 04:58:38] 2025-06-05 01:51:29,917 | INFO     | ready for new job
[2025-06-05 04:58:38] 2025-06-05 01:51:29,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:58:38] 2025-06-05 01:51:29,919 | INFO     | **************************************
[2025-06-05 04:58:38] 2025-06-05 01:51:29,919 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:58:38] 2025-06-05 01:51:29,919 | INFO     | **************************************
[2025-06-05 04:58:38] 2025-06-05 01:51:29,919 | INFO     | 
[2025-06-05 04:58:38] 2025-06-05 01:51:29,920 | INFO     | pilot is running in a VM
[2025-06-05 04:58:38] 2025-06-05 01:51:29,920 | INFO     | architecture information:
[2025-06-05 04:58:38] 2025-06-05 01:51:29,926 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:58:38] 2025-06-05 01:51:30,052 | INFO     | cat /etc/os-release:
[2025-06-05 04:58:38] NAME="CentOS Linux"
[2025-06-05 04:58:38] VERSION="7 (Core)"
[2025-06-05 04:58:38] ID="centos"
[2025-06-05 04:58:38] ID_LIKE="rhel fedora"
[2025-06-05 04:58:38] VERSION_ID="7"
[2025-06-05 04:58:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:58:38] ANSI_COLOR="0;31"
[2025-06-05 04:58:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:58:38] HOME_URL="https://www.centos.org/"
[2025-06-05 04:58:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:58:38] 
[2025-06-05 04:58:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:58:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:58:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:58:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:58:38] 
[2025-06-05 04:58:38] 2025-06-05 01:51:30,052 | INFO     | **************************************
[2025-06-05 04:58:38] 2025-06-05 01:51:30,556 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 04:58:38] 2025-06-05 01:51:30,743 | INFO     | sufficient remaining disk space (497224253440 B)
[2025-06-05 04:58:38] 2025-06-05 01:51:30,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:58:38] 2025-06-05 01:51:30,744 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:58:38] 2025-06-05 01:51:30,744 | INFO     | update_server=False
[2025-06-05 04:58:38] 2025-06-05 01:51:30,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:58:38] 2025-06-05 01:51:30,744 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 04:58:38] 2025-06-05 01:51:30,745 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:58:38] 2025-06-05 01:51:30,745 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:58:38] 2025-06-05 01:51:30,745 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:58:38] 2025-06-05 01:51:30,749 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:58:38] 2025-06-05 01:51:30,749 | INFO     | aborting loop
[2025-06-05 04:58:38] 2025-06-05 01:51:30,749 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:58:38] 2025-06-05 01:51:30,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:58:38] 2025-06-05 01:51:31,203 | INFO     | all payload control threads have been joined
[2025-06-05 04:58:38] 2025-06-05 01:51:31,661 | INFO     | all data control threads have been joined
[2025-06-05 04:58:38] 2025-06-05 01:51:31,750 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:31,755 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:31,911 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,040 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,052 | INFO     | all job control threads have been joined
[2025-06-05 04:58:38] 2025-06-05 01:51:32,210 | INFO     | [payload] control thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,227 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,277 | INFO     | [job] validate thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,364 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,538 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,668 | INFO     | [data] control thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:32,757 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:33,029 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:33,059 | INFO     | [job] control thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:33,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:58:38] 2025-06-05 01:51:34,263 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:34,760 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:41,301 | INFO     | job.realtimelogging is not enabled
[2025-06-05 04:58:38] 2025-06-05 01:51:42,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:58:38] 2025-06-05 01:51:44,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140691248346944)>', '<ExcThread(monitor, started 140690512148224)>']
[2025-06-05 04:58:38] 2025-06-05 01:51:44,827 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:58:38] 2025-06-05 01:51:44,828 | INFO     | [monitor] control thread has ended
[2025-06-05 04:58:38] 2025-06-05 01:51:49,070 | INFO     | all workflow threads have been joined
[2025-06-05 04:58:38] 2025-06-05 01:51:49,070 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:58:38] 2025-06-05 01:51:49,070 | INFO     | traces error code: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:49,070 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:58:38] 2025-06-05 01:51:49,369 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:58:38] 2025-06-05 01:51:49,506 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:58:38] 2025-06-05 01:51:49,608 [wrapper] pilotpid: 3518
[2025-06-05 04:58:38] 2025-06-05 01:51:49,711 [wrapper] Pilot exit status: 0
[2025-06-05 04:58:38] 2025-06-05 01:51:50,250 [wrapper] pandaids: 6678850665
[2025-06-05 04:58:38] 2025-06-05 01:51:50,978 [wrapper] cleanup supervisor_pilot  8541 3519
[2025-06-05 04:58:38] 2025-06-05 01:51:51,040 [wrapper] Test setup, not cleaning
[2025-06-05 04:58:38] 2025-06-05 01:51:51,138 [wrapper] apfmon messages muted
[2025-06-05 04:58:38] 2025-06-05 01:51:51,201 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:58:38] 2025-06-05 01:51:51,227 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:58:38]  *** Error codes and diagnostics ***
[2025-06-05 04:58:38]     "exeErrorCode": 0,
[2025-06-05 04:58:38]     "exeErrorDiag": "",
[2025-06-05 04:58:38]     "pilotErrorCode": 0,
[2025-06-05 04:58:38]     "pilotErrorDiag": "",
[2025-06-05 04:58:38]  *** Listing of results directory ***
[2025-06-05 04:58:38] total 386796
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:17 pilot3.tar.gz
[2025-06-05 04:58:38] -rwx------. 1 boinc boinc     37140 Jun  4 10:26 runpilot2-wrapper.sh
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:26 queuedata.json
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:58:38] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:20 run_atlas
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:20 job.xml
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc      6391 Jun  4 23:20 init_data.xml
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc 215626069 Jun  4 23:20 EVNT.45006593._000817.pool.root.1
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:20 start_atlas.sh
[2025-06-05 04:58:38] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:20 shared
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc    508881 Jun  4 23:20 input.tar.gz
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:20 boinc_lockfile
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc      2524 Jun  4 23:51 pandaJob.out
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc    987032 Jun  4 23:54 agis_schedconf.cvmfs.json
[2025-06-05 04:58:38] drwx------. 4 boinc boinc      4096 Jun  4 23:54 pilot3
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc 173452156 Jun  5 03:49 HITS.45006595._055640.pool.root.1
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:49 boinc_task_state.xml
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc      1018 Jun  5 03:49 memory_monitor_summary.json
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc   1598969 Jun  5 03:50 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc    377032 Jun  5 03:50 log.45006595._055640.job.log.tgz.1
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc        95 Jun  5 03:50 pilot_heartbeat.json
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc      7689 Jun  5 03:51 heartbeat.json
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc      4611 Jun  5 03:51 pilotlog.txt
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc   1214980 Jun  5 03:51 log.45006595._055640.job.log.1
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc       357 Jun  5 03:51 output.list
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:51 runtime_log
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc   1607680 Jun  5 03:51 result.tar.gz
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:51 runtime_log.err
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc       657 Jun  5 03:51 kpsLDmWdyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFmnKDmgOKQPn.diag
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:58 boinc_mmap_file
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc        28 Jun  5 04:58 wrapper_checkpoint.txt
[2025-06-05 04:58:38] -rw-r--r--. 1 boinc boinc     20489 Jun  5 04:58 stderr.txt
[2025-06-05 04:58:38] HITS file was successfully produced:
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc 173452156 Jun  5 03:49 shared/HITS.pool.root.1
[2025-06-05 04:58:38]  *** Contents of shared directory: ***
[2025-06-05 04:58:38] total 382052
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc 215626069 Jun  4 23:20 ATLAS.root_0
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:20 start_atlas.sh
[2025-06-05 04:58:38] -rw-r--r--. 2 boinc boinc    508881 Jun  4 23:20 input.tar.gz
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc 173452156 Jun  5 03:49 HITS.pool.root.1
[2025-06-05 04:58:38] -rw-------. 1 boinc boinc   1607680 Jun  5 03:51 result.tar.gz
04:58:40 (11292): run_atlas exited; CPU time 49714.451771
04:58:40 (11292): called boinc_finish(0)

</stderr_txt>
]]>

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