Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:44:15 (113509): wrapper (7.7.26015): starting
08:44:15 (113509): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 08:44:15] Arguments: --nthreads 9
[2025-06-04 08:44:15] Threads: 9
[2025-06-04 08:44:15] Checking for CVMFS
[2025-06-04 08:44:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:44:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:44:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:44:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:44:16] 2.11.2.0 22099 12383 261524 146780 1 203 12295281 18432000 4372 130560 0 52393005 98.953 97833827 37781 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:44:16] CVMFS is ok
[2025-06-04 08:44:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:44:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:44:16] Further information can be found at the LHC@home message board.
[2025-06-04 08:44:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:44:16] Checking for apptainer binary...
[2025-06-04 08:44:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:44:16] Running /usr/bin/apptainer --version
[2025-06-04 08:44:16] apptainer version 1.3.2-1.el7
[2025-06-04 08:44:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:44:16] c-210-33-1.aglt2.org
[2025-06-04 08:44:16] apptainer works
[2025-06-04 08:44:16] Set ATHENA_PROC_NUMBER=9
[2025-06-04 08:44:16] Set ATHENA_CORE_NUMBER=9
[2025-06-04 08:44:17] Starting ATLAS job with PandaID=6679235256
[2025-06-04 08:44:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:40:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:40:11]  filetype=log
[2025-06-04 09:40:11]  guid=3331c69e-c84d-40fb-93af-f8c5e5a25549
[2025-06-04 09:40:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 09:40:11]  is_altstaged=None
[2025-06-04 09:40:11]  is_tar=False
[2025-06-04 09:40:11]  lfn=log.45006595._056042.job.log.tgz.1
[2025-06-04 09:40:11]  mtime=0
[2025-06-04 09:40:11]  protocol_id=None
[2025-06-04 09:40:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:40:11]  replicas=None
[2025-06-04 09:40:11]  scope=mc23_13p6TeV
[2025-06-04 09:40:11]  status=None
[2025-06-04 09:40:11]  status_code=0
[2025-06-04 09:40:11]  storage_token=
[2025-06-04 09:40:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679235256/log.45006595._056042.job.log.tgz.1
[2025-06-04 09:40:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/5c/log.45006595._056042.job.log.tgz.1
[2025-06-04 09:40:11]  workdir=None
[2025-06-04 09:40:11] ]
[2025-06-04 09:40:11] 2025-06-04 13:39:55,543 | INFO     | transferring file log.45006595._056042.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679235256/log.45006595._056042.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:40:11] 2025-06-04 13:39:55,543 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679235256/log.45006595._056042.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._056042.job
[2025-06-04 09:40:11] 2025-06-04 13:39:55,559 | INFO     | adding to output.list: log.45006595._056042.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c1/5c/log.45006595._056042.job.log.tg
[2025-06-04 09:40:11] 2025-06-04 13:39:55,559 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:40:11] 2025-06-04 13:39:55,559 | INFO     | summary of transferred files:
[2025-06-04 09:40:11] 2025-06-04 13:39:55,559 | INFO     |  -- lfn=log.45006595._056042.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:40:11] 2025-06-04 13:39:55,559 | INFO     | stage-out finished correctly
[2025-06-04 09:40:11] 2025-06-04 13:39:55,603 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:40:11] 2025-06-04 13:39:55,713 | INFO     | monitor loop #255: job 0:6679235256 is in state 'finished'
[2025-06-04 09:40:11] 2025-06-04 13:39:55,713 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:40:11] 2025-06-04 13:39:56,349 | INFO     | job 6679235256 has state=finished
[2025-06-04 09:40:11] 2025-06-04 13:39:56,349 | INFO     | preparing for final server update for job 6679235256 in state='finished'
[2025-06-04 09:40:11] 2025-06-04 13:39:56,350 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:40:11] 2025-06-04 13:39:56,350 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:40:11] 2025-06-04 13:39:56,350 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:40:11] 2025-06-04 13:39:56,350 | INFO     | job 6679235256 has finished - writing final server update
[2025-06-04 09:40:11] 2025-06-04 13:39:56,350 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:40:11] 2025-06-04 13:39:56,354 | INFO     | executing command: lscpu
[2025-06-04 09:40:11] 2025-06-04 13:39:56,399 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:40:11] 2025-06-04 13:39:58,216 | INFO     | monitor loop #256: job 0:6679235256 is in state 'finished'
[2025-06-04 09:40:11] 2025-06-04 13:39:58,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,168 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:40:11] 2025-06-04 13:39:59,168 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679235256/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,169 | INFO     | extracted standard info from prmon json
[2025-06-04 09:40:11] 2025-06-04 13:39:59,169 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:40:11] 2025-06-04 13:39:59,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:40:11] 2025-06-04 13:39:59,170 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:40:11] 2025-06-04 13:39:59,170 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:40:11] 2025-06-04 13:39:59,171 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:40:11] 2025-06-04 13:39:59,171 | INFO     | sum of square deviations: 34277852.0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | sum of deviations: -1501732007.5
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | mean x: 1749042827.5
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | mean y: 2579750.1458333335
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | -- intersect: 76629131394.7778
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | intersect: 76629131394.7778
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | chi2: 0.004075605136957697
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | -- intersect: 76629131394.7778
[2025-06-04 09:40:11] 2025-06-04 13:39:59,172 | INFO     | current memory leak: -43.81 B/s (using 48 data points, chi2=0.00)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | ..............................
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . Timing measurements:
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . get job = 0 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . initial setup = 2 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . payload setup = 5 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . stage-in = 0 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . payload execution = 3304 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . stage-out = 0 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | . log creation = 0 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,173 | INFO     | ..............................
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | 
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | job summary report
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | --------------------------------------------------
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | PanDA job id: 6679235256
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | task id: 45006595
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | errors: (none)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,638 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | pilot state: finished 
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | transexitcode: 0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | exeerrorcode: 0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | exeerrordiag: 
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | exitcode: 0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | exitmsg: OK
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | cpuconsumptiontime: 27997 s
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | nevents: 400
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | neventsw: 0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,639 | INFO     | pid: 123521
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | pgrp: 123521
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | corecount: 9
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | event service: False
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | sizes: {0: 2397292, 3: 2397498, 11: 2397526, 3313: 2423149, 3314: 2423148, 3316: 2432329, 3319: 2432443}
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | --------------------------------------------------
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | 
[2025-06-04 09:40:11] 2025-06-04 13:39:59,640 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 09:40:11] 2025-06-04 13:39:59,666 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,666 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,668 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,668 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,668 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:40:11] 2025-06-04 13:39:59,668 | INFO     | job 6679235256 has completed (purged errors)
[2025-06-04 09:40:11] 2025-06-04 13:39:59,668 | INFO     | overall cleanup function is called
[2025-06-04 09:40:11] 2025-06-04 13:40:00,676 | INFO     | --- collectZombieJob: --- 10, [123521]
[2025-06-04 09:40:11] 2025-06-04 13:40:00,676 | INFO     | zombie collector waiting for pid 123521
[2025-06-04 09:40:11] 2025-06-04 13:40:00,676 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:40:11] 2025-06-04 13:40:00,676 | INFO     | collected zombie processes
[2025-06-04 09:40:11] 2025-06-04 13:40:00,676 | INFO     | will attempt to kill all subprocesses of pid=123521
[2025-06-04 09:40:11] 2025-06-04 13:40:00,802 | INFO     | process IDs to be killed: [123521] (in reverse order)
[2025-06-04 09:40:11] 2025-06-04 13:40:00,886 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:40:11] 2025-06-04 13:40:00,886 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:40:11] 2025-06-04 13:40:00,892 | INFO     | did not find any defunct processes belonging to 123521
[2025-06-04 09:40:11] 2025-06-04 13:40:00,898 | INFO     | did not find any defunct processes belonging to 123521
[2025-06-04 09:40:11] 2025-06-04 13:40:00,898 | INFO     | ready for new job
[2025-06-04 09:40:11] 2025-06-04 13:40:00,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:40:11] 2025-06-04 13:40:00,899 | INFO     | **************************************
[2025-06-04 09:40:11] 2025-06-04 13:40:00,900 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:40:11] 2025-06-04 13:40:00,900 | INFO     | **************************************
[2025-06-04 09:40:11] 2025-06-04 13:40:00,900 | INFO     | 
[2025-06-04 09:40:11] 2025-06-04 13:40:00,903 | INFO     | architecture information:
[2025-06-04 09:40:11] 2025-06-04 13:40:00,903 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:40:11] 2025-06-04 13:40:00,921 | INFO     | cat /etc/os-release:
[2025-06-04 09:40:11] NAME="CentOS Linux"
[2025-06-04 09:40:11] VERSION="7 (Core)"
[2025-06-04 09:40:11] ID="centos"
[2025-06-04 09:40:11] ID_LIKE="rhel fedora"
[2025-06-04 09:40:11] VERSION_ID="7"
[2025-06-04 09:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:40:11] ANSI_COLOR="0;31"
[2025-06-04 09:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:40:11] HOME_URL="https://www.centos.org/"
[2025-06-04 09:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:40:11] 
[2025-06-04 09:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:40:11] 
[2025-06-04 09:40:11] 2025-06-04 13:40:00,922 | INFO     | **************************************
[2025-06-04 09:40:11] 2025-06-04 13:40:01,425 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:40:11] 2025-06-04 13:40:01,444 | INFO     | sufficient remaining disk space (55740203008 B)
[2025-06-04 09:40:11] 2025-06-04 13:40:01,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:40:11] 2025-06-04 13:40:01,445 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:40:11] 2025-06-04 13:40:01,445 | INFO     | update_server=False
[2025-06-04 09:40:11] 2025-06-04 13:40:01,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:40:11] 2025-06-04 13:40:01,445 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:40:11] 2025-06-04 13:40:01,653 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:40:11] 2025-06-04 13:40:01,674 | INFO     | all data control threads have been joined
[2025-06-04 09:40:11] 2025-06-04 13:40:01,729 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:40:11] 2025-06-04 13:40:01,729 | INFO     | aborting loop
[2025-06-04 09:40:11] 2025-06-04 13:40:02,050 | INFO     | PID=117105 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 09:40:11] 2025-06-04 13:40:02,050 | INFO     | .. there are 10 such processes running
[2025-06-04 09:40:11] 2025-06-04 13:40:02,051 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:40:11] 2025-06-04 13:40:02,051 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:40:11] 2025-06-04 13:40:02,051 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:40:11] 2025-06-04 13:40:02,276 | INFO     | all payload control threads have been joined
[2025-06-04 09:40:11] 2025-06-04 13:40:02,451 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,497 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,605 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,667 | INFO     | all job control threads have been joined
[2025-06-04 09:40:11] 2025-06-04 13:40:02,679 | INFO     | [data] control thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,735 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,836 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,926 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:02,986 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,281 | INFO     | [payload] control thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,452 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,505 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,672 | INFO     | [job] control thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,861 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:03,878 | INFO     | [job] validate thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:04,264 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:40:11] 2025-06-04 13:40:05,270 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:05,659 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:40:11] 2025-06-04 13:40:06,080 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449946019648)>', '<ExcThread(monitor, started 140449373214464)>']
[2025-06-04 09:40:11] 2025-06-04 13:40:07,078 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:40:11] 2025-06-04 13:40:07,078 | INFO     | [monitor] control thread has ended
[2025-06-04 09:40:11] 2025-06-04 13:40:11,105 | INFO     | all workflow threads have been joined
[2025-06-04 09:40:11] 2025-06-04 13:40:11,105 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:40:11] 2025-06-04 13:40:11,105 | INFO     | traces error code: 0
[2025-06-04 09:40:11] 2025-06-04 13:40:11,106 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:40:11] 2025-06-04 13:40:11,211 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:40:11] 2025-06-04 13:40:11,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:40:11] 2025-06-04 13:40:11,216 [wrapper] pilotpid: 117105
[2025-06-04 09:40:11] 2025-06-04 13:40:11,219 [wrapper] Pilot exit status: 0
[2025-06-04 09:40:11] 2025-06-04 13:40:11,228 [wrapper] pandaids: 6679235256
[2025-06-04 09:40:11] 2025-06-04 13:40:11,291 [wrapper] cleanup supervisor_pilot 186355 117106
[2025-06-04 09:40:11] 2025-06-04 13:40:11,293 [wrapper] Test setup, not cleaning
[2025-06-04 09:40:11] 2025-06-04 13:40:11,296 [wrapper] apfmon messages muted
[2025-06-04 09:40:11] 2025-06-04 13:40:11,298 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:40:11] 2025-06-04 13:40:11,300 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:40:11]  *** Error codes and diagnostics ***
[2025-06-04 09:40:11]     "exeErrorCode": 0,
[2025-06-04 09:40:11]     "exeErrorDiag": "",
[2025-06-04 09:40:11]     "pilotErrorCode": 0,
[2025-06-04 09:40:11]     "pilotErrorDiag": "",
[2025-06-04 09:40:11]  *** Listing of results directory ***
[2025-06-04 09:40:11] total 384636
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:46 pilot3.tar.gz
[2025-06-04 09:40:11] -rwx------ 1 boincer umatlas     37140 Jun  4 04:56 runpilot2-wrapper.sh
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:56 queuedata.json
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:40:11] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:44 run_atlas
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:44 job.xml
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas 214279663 Jun  4 08:44 EVNT.45006593._001660.pool.root.1
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:44 start_atlas.sh
[2025-06-04 09:40:11] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:44 shared
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 08:44 input.tar.gz
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:44 boinc_lockfile
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 08:44 pandaJob.out
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas    986811 Jun  4 08:44 agis_schedconf.cvmfs.json
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas   1598969 Jun  4 08:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:40:11] drwx------ 4 boincer umatlas      4096 Jun  4 08:44 pilot3
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas      6354 Jun  4 09:28 init_data.xml
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas 174449342 Jun  4 09:39 HITS.45006595._056042.pool.root.1
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas       529 Jun  4 09:39 boinc_task_state.xml
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas      1043 Jun  4 09:39 memory_monitor_summary.json
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas    306119 Jun  4 09:39 log.45006595._056042.job.log.tgz.1
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas      7737 Jun  4 09:39 heartbeat.json
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 09:40 boinc_mmap_file
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas        27 Jun  4 09:40 wrapper_checkpoint.txt
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas        95 Jun  4 09:40 pilot_heartbeat.json
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas      4747 Jun  4 09:40 pilotlog.txt
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas    345660 Jun  4 09:40 log.45006595._056042.job.log.1
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas       357 Jun  4 09:40 output.list
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas       620 Jun  4 09:40 runtime_log
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas    675840 Jun  4 09:40 result.tar.gz
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas       656 Jun  4 09:40 ve1LDm45yg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUrnKDmKlimvn.diag
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 09:40 runtime_log.err
[2025-06-04 09:40:11] -rw-r--r-- 1 boincer umatlas     21268 Jun  4 09:40 stderr.txt
[2025-06-04 09:40:11] HITS file was successfully produced:
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas 174449342 Jun  4 09:39 shared/HITS.pool.root.1
[2025-06-04 09:40:11]  *** Contents of shared directory: ***
[2025-06-04 09:40:11] total 380804
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas 214279663 Jun  4 08:44 ATLAS.root_0
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:44 start_atlas.sh
[2025-06-04 09:40:11] -rw-r--r-- 2 boincer umatlas    508879 Jun  4 08:44 input.tar.gz
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas 174449342 Jun  4 09:39 HITS.pool.root.1
[2025-06-04 09:40:11] -rw------- 1 boincer umatlas    675840 Jun  4 09:40 result.tar.gz
09:40:12 (113509): run_atlas exited; CPU time 28005.378808
09:40:12 (113509): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN