Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:46:26 (90208): wrapper (7.7.26015): starting
08:46:26 (90208): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:46:26] Arguments: --nthreads 8
[2025-06-04 08:46:26] Threads: 8
[2025-06-04 08:46:26] Checking for CVMFS
[2025-06-04 08:46:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:46:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:46:26] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:46:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:46:26] 2.11.2.0 39063 12855 324720 146780 3 472 15436628 18432001 12881 130560 1 111891032 99.277 153704269 48919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:46:26] CVMFS is ok
[2025-06-04 08:46:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:46:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:46:26] Further information can be found at the LHC@home message board.
[2025-06-04 08:46:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:46:26] Checking for apptainer binary...
[2025-06-04 08:46:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:46:26] Running /usr/bin/apptainer --version
[2025-06-04 08:46:26] apptainer version 1.3.2-1.el7
[2025-06-04 08:46:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:46:27] c-212-9.aglt2.org
[2025-06-04 08:46:27] apptainer works
[2025-06-04 08:46:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:46:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:46:27] Starting ATLAS job with PandaID=6679031082
[2025-06-04 08:46:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:17:17]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:17:17]  protocol_id=None
[2025-06-04 10:17:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 10:17:17]  replicas=None
[2025-06-04 10:17:17]  scope=mc23_13p6TeV
[2025-06-04 10:17:17]  status=None
[2025-06-04 10:17:17]  status_code=0
[2025-06-04 10:17:17]  storage_token=
[2025-06-04 10:17:17]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6679031082/log.44871837._102148.job.log.tgz.1
[2025-06-04 10:17:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/06/log.44871837._102148.job.log.tgz.1
[2025-06-04 10:17:17]  workdir=None
[2025-06-04 10:17:17] ]
[2025-06-04 10:17:17] 2025-06-04 14:16:48,660 | INFO     | transferring file log.44871837._102148.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6679031082/log.44871837._102148.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 10:17:17] 2025-06-04 14:16:48,660 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6679031082/log.44871837._102148.job.log.tgz.1 /tmp/boinchome/slots/5/log.44871837._102148.job
[2025-06-04 10:17:17] 2025-06-04 14:16:48,816 | INFO     | adding to output.list: log.44871837._102148.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/06/log.44871837._102148.job.log.tg
[2025-06-04 10:17:17] 2025-06-04 14:16:48,817 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 10:17:17] 2025-06-04 14:16:48,817 | INFO     | summary of transferred files:
[2025-06-04 10:17:17] 2025-06-04 14:16:48,817 | INFO     |  -- lfn=log.44871837._102148.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 10:17:17] 2025-06-04 14:16:48,817 | INFO     | stage-out finished correctly
[2025-06-04 10:17:17] 2025-06-04 14:16:51,366 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 10:17:17] 2025-06-04 14:16:51,441 | INFO     | job 6679031082 has state=finished
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | preparing for final server update for job 6679031082 in state='finished'
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | this job has now completed (state=finished)
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | log transfer has been attempted: DONE
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | job 6679031082 has finished - writing final server update
[2025-06-04 10:17:17] 2025-06-04 14:16:51,442 | INFO     | total number of processed events: 400 (read)
[2025-06-04 10:17:17] 2025-06-04 14:16:51,447 | INFO     | executing command: lscpu
[2025-06-04 10:17:17] 2025-06-04 14:16:51,566 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 10:17:17] 2025-06-04 14:16:52,644 | WARNING  | process 15267 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 10:17:17] 2025-06-04 14:16:52,644 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6679031082/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:17:17] 2025-06-04 14:16:52,948 | INFO     | number of running child processes to parent process 15267: 1
[2025-06-04 10:17:17] 2025-06-04 14:16:52,949 | INFO     | maximum number of monitored processes: 6
[2025-06-04 10:17:17] 2025-06-04 14:16:55,453 | INFO     | monitor loop #401: job 0:6679031082 is in state 'finished'
[2025-06-04 10:17:17] 2025-06-04 14:16:55,454 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:17:17] 2025-06-04 14:16:57,958 | INFO     | monitor loop #402: job 0:6679031082 is in state 'finished'
[2025-06-04 10:17:17] 2025-06-04 14:16:57,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:17:17] 2025-06-04 14:16:58,129 | INFO     | PID=96303 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 10:17:17] 2025-06-04 14:16:58,129 | INFO     | .. there are 18 such processes running
[2025-06-04 10:17:17] 2025-06-04 14:17:00,462 | INFO     | monitor loop #403: job 0:6679031082 is in state 'finished'
[2025-06-04 10:17:17] 2025-06-04 14:17:00,463 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:17:17] 2025-06-04 14:17:01,654 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 10:17:17] 2025-06-04 14:17:01,654 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6679031082/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:17:17] 2025-06-04 14:17:01,655 | INFO     | extracted standard info from prmon json
[2025-06-04 10:17:17] 2025-06-04 14:17:01,655 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:17:17] 2025-06-04 14:17:01,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:17:17] 2025-06-04 14:17:01,656 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:17:17] 2025-06-04 14:17:01,656 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:17:17] 2025-06-04 14:17:01,661 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | sum of square deviations: 170944600.5
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | sum of deviations: -241833401.9999999
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | mean x: 1749043998.5
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | mean y: 2505175.7073170734
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | -- intersect: 2476858031.3562307
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | intersect: 2476858031.3562307
[2025-06-04 10:17:17] 2025-06-04 14:17:01,662 | INFO     | chi2: 0.003087947741116165
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | -- intersect: 2476858031.3562307
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | current memory leak: -1.41 B/s (using 82 data points, chi2=0.00)
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | ..............................
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | . Timing measurements:
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | . get job = 0 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | . initial setup = 2 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | . payload setup = 5 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,663 | INFO     | . stage-in = 0 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,664 | INFO     | . payload execution = 5384 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,664 | INFO     | . stage-out = 1 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,664 | INFO     | . log creation = 0 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,664 | INFO     | ..............................
[2025-06-04 10:17:17] 2025-06-04 14:17:01,758 | INFO     | 
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | job summary report
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | --------------------------------------------------
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | PanDA job id: 6679031082
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | task id: 44871837
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | errors: (none)
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | pilot state: finished 
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | transexitcode: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | exeerrorcode: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | exeerrordiag: 
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | exitcode: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:01,759 | INFO     | exitmsg: OK
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | cpuconsumptiontime: 38590 s
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | nevents: 400
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | neventsw: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | pid: 15267
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | pgrp: 15267
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | corecount: 8
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | event service: False
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 5393: 2424159, 5394: 2424158, 5396: 2433155, 5399: 2433339, 5409: 2433509}
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | --------------------------------------------------
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | 
[2025-06-04 10:17:17] 2025-06-04 14:17:01,760 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,010 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:17:17] 2025-06-04 14:17:02,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,013 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:17:17] 2025-06-04 14:17:02,013 | INFO     | job 6679031082 has completed (purged errors)
[2025-06-04 10:17:17] 2025-06-04 14:17:02,013 | INFO     | overall cleanup function is called
[2025-06-04 10:17:17] 2025-06-04 14:17:03,020 | INFO     | --- collectZombieJob: --- 10, [15267]
[2025-06-04 10:17:17] 2025-06-04 14:17:03,021 | INFO     | zombie collector waiting for pid 15267
[2025-06-04 10:17:17] 2025-06-04 14:17:03,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:17:17] 2025-06-04 14:17:03,021 | INFO     | collected zombie processes
[2025-06-04 10:17:17] 2025-06-04 14:17:03,021 | INFO     | will attempt to kill all subprocesses of pid=15267
[2025-06-04 10:17:17] 2025-06-04 14:17:03,229 | INFO     | process IDs to be killed: [15267] (in reverse order)
[2025-06-04 10:17:17] 2025-06-04 14:17:03,694 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:17:17] 2025-06-04 14:17:03,694 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:17:17] 2025-06-04 14:17:03,703 | INFO     | did not find any defunct processes belonging to 15267
[2025-06-04 10:17:17] 2025-06-04 14:17:03,710 | INFO     | did not find any defunct processes belonging to 15267
[2025-06-04 10:17:17] 2025-06-04 14:17:03,711 | INFO     | ready for new job
[2025-06-04 10:17:17] 2025-06-04 14:17:03,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:17:17] 2025-06-04 14:17:03,712 | INFO     | **************************************
[2025-06-04 10:17:17] 2025-06-04 14:17:03,712 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:17:17] 2025-06-04 14:17:03,712 | INFO     | **************************************
[2025-06-04 10:17:17] 2025-06-04 14:17:03,712 | INFO     | 
[2025-06-04 10:17:17] 2025-06-04 14:17:03,717 | INFO     | architecture information:
[2025-06-04 10:17:17] 2025-06-04 14:17:03,717 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:17:17] 2025-06-04 14:17:03,804 | INFO     | cat /etc/os-release:
[2025-06-04 10:17:17] NAME="CentOS Linux"
[2025-06-04 10:17:17] VERSION="7 (Core)"
[2025-06-04 10:17:17] ID="centos"
[2025-06-04 10:17:17] ID_LIKE="rhel fedora"
[2025-06-04 10:17:17] VERSION_ID="7"
[2025-06-04 10:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:17:17] ANSI_COLOR="0;31"
[2025-06-04 10:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:17:17] HOME_URL="https://www.centos.org/"
[2025-06-04 10:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:17:17] 
[2025-06-04 10:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:17:17] 
[2025-06-04 10:17:17] 2025-06-04 14:17:03,804 | INFO     | **************************************
[2025-06-04 10:17:17] 2025-06-04 14:17:04,307 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-06-04 10:17:17] 2025-06-04 14:17:04,383 | INFO     | sufficient remaining disk space (103870889984 B)
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | INFO     | update_server=False
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | INFO     | aborting loop
[2025-06-04 10:17:17] 2025-06-04 14:17:04,384 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 10:17:17] 2025-06-04 14:17:04,385 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:17:17] 2025-06-04 14:17:04,385 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:17:17] 2025-06-04 14:17:04,385 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:17:17] 2025-06-04 14:17:04,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:17:17] 2025-06-04 14:17:04,720 | INFO     | all job control threads have been joined
[2025-06-04 10:17:17] 2025-06-04 14:17:05,091 | INFO     | all data control threads have been joined
[2025-06-04 10:17:17] 2025-06-04 14:17:05,389 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,390 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,420 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,450 | INFO     | [job] validate thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,600 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,647 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,725 | INFO     | [job] control thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:05,780 | INFO     | all payload control threads have been joined
[2025-06-04 10:17:17] 2025-06-04 14:17:05,834 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,099 | INFO     | [data] control thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,443 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,460 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:17:17] 2025-06-04 14:17:06,768 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:17:17] 2025-06-04 14:17:06,784 | INFO     | [payload] control thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:06,851 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:07,779 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:10,466 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:17:17] 2025-06-04 14:17:11,581 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139731948533568)>', '<ExcThread(monitor, started 139731526481664)>']
[2025-06-04 10:17:17] 2025-06-04 14:17:12,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:17:17] 2025-06-04 14:17:12,432 | INFO     | [monitor] control thread has ended
[2025-06-04 10:17:17] 2025-06-04 14:17:16,607 | INFO     | all workflow threads have been joined
[2025-06-04 10:17:17] 2025-06-04 14:17:16,608 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:17:17] 2025-06-04 14:17:16,608 | INFO     | traces error code: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:16,608 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:17:17] 2025-06-04 14:17:16,813 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:17:17] 2025-06-04 14:17:16,816 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:17:17] 2025-06-04 14:17:16,817 [wrapper] pilotpid: 96303
[2025-06-04 10:17:17] 2025-06-04 14:17:16,862 [wrapper] Pilot exit status: 0
[2025-06-04 10:17:17] 2025-06-04 14:17:17,053 [wrapper] pandaids: 6679031082
[2025-06-04 10:17:17] 2025-06-04 14:17:17,445 [wrapper] cleanup supervisor_pilot 21809 96304
[2025-06-04 10:17:17] 2025-06-04 14:17:17,458 [wrapper] Test setup, not cleaning
[2025-06-04 10:17:17] 2025-06-04 14:17:17,460 [wrapper] apfmon messages muted
[2025-06-04 10:17:17] 2025-06-04 14:17:17,463 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:17:17] 2025-06-04 14:17:17,465 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:17:17]  *** Error codes and diagnostics ***
[2025-06-04 10:17:17]     "exeErrorCode": 0,
[2025-06-04 10:17:17]     "exeErrorDiag": "",
[2025-06-04 10:17:17]     "pilotErrorCode": 0,
[2025-06-04 10:17:17]     "pilotErrorDiag": "",
[2025-06-04 10:17:17]  *** Listing of results directory ***
[2025-06-04 10:17:17] total 417072
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:43 queuedata.json
[2025-06-04 10:17:17] -rwx------ 1 boincer umatlas     37140 Jun  4 04:44 runpilot2-wrapper.sh
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:17:17] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:46 run_atlas
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:46 job.xml
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas 222830635 Jun  4 08:46 EVNT.44871834._002462.pool.root.1
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:46 start_atlas.sh
[2025-06-04 10:17:17] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:46 shared
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 08:46 input.tar.gz
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:46 boinc_lockfile
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas      2559 Jun  4 08:46 pandaJob.out
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas    986811 Jun  4 08:46 agis_schedconf.cvmfs.json
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas   1598969 Jun  4 08:46 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:17:17] drwx------ 4 boincer umatlas      4096 Jun  4 08:46 pilot3
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas      6302 Jun  4 10:13 init_data.xml
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas        95 Jun  4 10:16 pilot_heartbeat.json
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas 198753585 Jun  4 10:16 HITS.44871837._102148.pool.root.1
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas       530 Jun  4 10:16 boinc_task_state.xml
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas      1044 Jun  4 10:16 memory_monitor_summary.json
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas    309190 Jun  4 10:16 log.44871837._102148.job.log.tgz.1
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas      7709 Jun  4 10:17 heartbeat.json
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:17 boinc_mmap_file
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:17 wrapper_checkpoint.txt
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas      4477 Jun  4 10:17 pilotlog.txt
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas    524677 Jun  4 10:17 log.44871837._102148.job.log.1
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas       357 Jun  4 10:17 output.list
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:17 runtime_log
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas    849920 Jun  4 10:17 result.tar.gz
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 10:17 runtime_log.err
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas       656 Jun  4 10:17 lo1KDmzuyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOonKDmNYhMDn.diag
[2025-06-04 10:17:17] -rw-r--r-- 1 boincer umatlas     21853 Jun  4 10:17 stderr.txt
[2025-06-04 10:17:17] HITS file was successfully produced:
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas 198753585 Jun  4 10:16 shared/HITS.pool.root.1
[2025-06-04 10:17:17]  *** Contents of shared directory: ***
[2025-06-04 10:17:17] total 413060
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas 222830635 Jun  4 08:46 ATLAS.root_0
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:46 start_atlas.sh
[2025-06-04 10:17:17] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 08:46 input.tar.gz
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas 198753585 Jun  4 10:16 HITS.pool.root.1
[2025-06-04 10:17:17] -rw------- 1 boincer umatlas    849920 Jun  4 10:17 result.tar.gz
10:17:19 (90208): run_atlas exited; CPU time 38494.130534
10:17:19 (90208): called boinc_finish(0)

</stderr_txt>
]]>

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