Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:40:25 (1298328): wrapper (7.7.26015): starting
00:40:25 (1298328): wrapper: running run_atlas (--nthreads 3)
[2025-06-05 00:40:25] Arguments: --nthreads 3
[2025-06-05 00:40:25] Threads: 3
[2025-06-05 00:40:25] Checking for CVMFS
[2025-06-05 00:40:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:40:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:40:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:40:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:40:25] 2.9.2.0 304836 3260 73364 146797 0 55 31201184 36864001 0 130560 0 2673549 99.991 831287 44503 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-06-05 00:40:25] CVMFS is ok
[2025-06-05 00:40:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:40:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:40:25] Further information can be found at the LHC@home message board.
[2025-06-05 00:40:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:40:25] Checking for apptainer binary...
[2025-06-05 00:40:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:40:25] Running /usr/bin/apptainer --version
[2025-06-05 00:40:25] apptainer version 1.3.6-6.1
[2025-06-05 00:40:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:40:26] thA333
[2025-06-05 00:40:26] apptainer works
[2025-06-05 00:40:26] Set ATHENA_PROC_NUMBER=3
[2025-06-05 00:40:26] Set ATHENA_CORE_NUMBER=3
[2025-06-05 00:40:26] Starting ATLAS job with PandaID=6678313199
[2025-06-05 00:40:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:59:55]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:59:55]  protocol_id=None
[2025-06-05 01:59:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 01:59:55]  replicas=None
[2025-06-05 01:59:55]  scope=mc23_13p6TeV
[2025-06-05 01:59:55]  status=None
[2025-06-05 01:59:55]  status_code=0
[2025-06-05 01:59:55]  storage_token=
[2025-06-05 01:59:55]  surl=/local/data/boinc/slots/0/PanDA_Pilot-6678313199/log.45006595._052293.job.log.tgz.1
[2025-06-05 01:59:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/bf/log.45006595._052293.job.log.tgz.1
[2025-06-05 01:59:55]  workdir=None
[2025-06-05 01:59:55] ]
[2025-06-05 01:59:55] 2025-06-04 23:59:22,980 | INFO     | transferring file log.45006595._052293.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-6678313199/log.45006595._052293.job.log.tgz.1 to /local/data/boinc/
[2025-06-05 01:59:55] 2025-06-04 23:59:22,980 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-6678313199/log.45006595._052293.job.log.tgz.1 /local/data/boinc/slots/0/log.45006595._0522
[2025-06-05 01:59:55] 2025-06-04 23:59:22,993 | INFO     | adding to output.list: log.45006595._052293.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e4/bf/log.45006595._052293.job.log.tg
[2025-06-05 01:59:55] 2025-06-04 23:59:22,993 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 01:59:55] 2025-06-04 23:59:22,993 | INFO     | summary of transferred files:
[2025-06-05 01:59:55] 2025-06-04 23:59:22,993 | INFO     |  -- lfn=log.45006595._052293.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 01:59:55] 2025-06-04 23:59:22,994 | INFO     | stage-out finished correctly
[2025-06-05 01:59:55] 2025-06-04 23:59:25,814 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 01:59:55] 2025-06-04 23:59:25,894 | WARNING  | process 1308471 can no longer be monitored (due to stat problems) - aborting
[2025-06-05 01:59:55] 2025-06-04 23:59:25,895 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678313199/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:59:55] 2025-06-04 23:59:25,928 | INFO     | number of running child processes to parent process 1308471: 1
[2025-06-05 01:59:55] 2025-06-04 23:59:25,928 | INFO     | maximum number of monitored processes: 6
[2025-06-05 01:59:55] 2025-06-04 23:59:26,418 | INFO     | PID=1301972 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 01:59:55] 2025-06-04 23:59:28,209 | INFO     | job 6678313199 has state=finished
[2025-06-05 01:59:55] 2025-06-04 23:59:28,209 | INFO     | preparing for final server update for job 6678313199 in state='finished'
[2025-06-05 01:59:55] 2025-06-04 23:59:28,210 | INFO     | this job has now completed (state=finished)
[2025-06-05 01:59:55] 2025-06-04 23:59:28,210 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 01:59:55] 2025-06-04 23:59:28,211 | INFO     | log transfer has been attempted: DONE
[2025-06-05 01:59:55] 2025-06-04 23:59:28,211 | INFO     | job 6678313199 has finished - writing final server update
[2025-06-05 01:59:55] 2025-06-04 23:59:28,211 | INFO     | total number of processed events: 400 (read)
[2025-06-05 01:59:55] 2025-06-04 23:59:28,214 | INFO     | executing command: lscpu
[2025-06-05 01:59:55] 2025-06-04 23:59:28,231 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 01:59:55] 2025-06-04 23:59:28,431 | INFO     | monitor loop #365: job 0:6678313199 is in state 'finished'
[2025-06-05 01:59:55] 2025-06-04 23:59:28,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:59:55] 2025-06-04 23:59:30,934 | INFO     | monitor loop #366: job 0:6678313199 is in state 'finished'
[2025-06-05 01:59:55] 2025-06-04 23:59:30,935 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:59:55] 2025-06-04 23:59:33,438 | INFO     | monitor loop #367: job 0:6678313199 is in state 'finished'
[2025-06-05 01:59:55] 2025-06-04 23:59:33,438 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,726 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 01:59:55] 2025-06-04 23:59:35,726 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-6678313199/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,727 | INFO     | extracted standard info from prmon json
[2025-06-05 01:59:55] 2025-06-04 23:59:35,727 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:59:55] 2025-06-04 23:59:35,727 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:59:55] 2025-06-04 23:59:35,727 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:59:55] 2025-06-04 23:59:35,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | sum of square deviations: 110960220.0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | sum of deviations: -9641966219.999998
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | mean x: 1749079302.0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | mean y: 2438508.084507042
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | -- intersect: 151989912451.31546
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | intersect: 151989912451.31546
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | chi2: 0.061028650055476946
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | -- intersect: 151989912451.31546
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | current memory leak: -86.90 B/s (using 71 data points, chi2=0.06)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | ..............................
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . Timing measurements:
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . get job = 0 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . initial setup = 1 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . payload setup = 6 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . stage-in = 0 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . payload execution = 4700 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . stage-out = 0 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,728 | INFO     | . log creation = 0 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,729 | INFO     | ..............................
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | 
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | job summary report
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | --------------------------------------------------
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | PanDA job id: 6678313199
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | task id: 45006595
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | errors: (none)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | pilot state: finished 
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | transexitcode: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | exeerrorcode: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | exeerrordiag: 
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | exitcode: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | exitmsg: OK
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | cpuconsumptiontime: 13466 s
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | nevents: 400
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | neventsw: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | pid: 1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | pgrp: 1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | corecount: 3
[2025-06-05 01:59:55] 2025-06-04 23:59:35,760 | INFO     | event service: False
[2025-06-05 01:59:55] 2025-06-04 23:59:35,761 | INFO     | sizes: {0: 2397345, 1: 2397345, 5: 2397579, 11: 2397635, 4710: 2432751, 4713: 2432751, 4723: 2433049}
[2025-06-05 01:59:55] 2025-06-04 23:59:35,761 | INFO     | --------------------------------------------------
[2025-06-05 01:59:55] 2025-06-04 23:59:35,761 | INFO     | 
[2025-06-05 01:59:55] 2025-06-04 23:59:35,761 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,772 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | job 6678313199 has completed (purged errors)
[2025-06-05 01:59:55] 2025-06-04 23:59:35,773 | INFO     | overall cleanup function is called
[2025-06-05 01:59:55] 2025-06-04 23:59:36,779 | INFO     | --- collectZombieJob: --- 10, [1308471]
[2025-06-05 01:59:55] 2025-06-04 23:59:36,780 | INFO     | zombie collector waiting for pid 1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:36,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:59:55] 2025-06-04 23:59:36,780 | INFO     | collected zombie processes
[2025-06-05 01:59:55] 2025-06-04 23:59:36,780 | INFO     | will attempt to kill all subprocesses of pid=1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:36,819 | INFO     | process IDs to be killed: [1308471] (in reverse order)
[2025-06-05 01:59:55] 2025-06-04 23:59:36,846 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:59:55] 2025-06-04 23:59:36,846 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:59:55] 2025-06-04 23:59:36,850 | INFO     | did not find any defunct processes belonging to 1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:36,854 | INFO     | did not find any defunct processes belonging to 1308471
[2025-06-05 01:59:55] 2025-06-04 23:59:36,854 | INFO     | ready for new job
[2025-06-05 01:59:55] 2025-06-04 23:59:36,855 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:59:55] 2025-06-04 23:59:36,857 | INFO     | **************************************
[2025-06-05 01:59:55] 2025-06-04 23:59:36,857 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:59:55] 2025-06-04 23:59:36,857 | INFO     | **************************************
[2025-06-05 01:59:55] 2025-06-04 23:59:36,857 | INFO     | 
[2025-06-05 01:59:55] 2025-06-04 23:59:36,859 | INFO     | architecture information:
[2025-06-05 01:59:55] 2025-06-04 23:59:36,859 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:59:55] 2025-06-04 23:59:36,882 | INFO     | cat /etc/os-release:
[2025-06-05 01:59:55] NAME="CentOS Linux"
[2025-06-05 01:59:55] VERSION="7 (Core)"
[2025-06-05 01:59:55] ID="centos"
[2025-06-05 01:59:55] ID_LIKE="rhel fedora"
[2025-06-05 01:59:55] VERSION_ID="7"
[2025-06-05 01:59:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:59:55] ANSI_COLOR="0;31"
[2025-06-05 01:59:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:59:55] HOME_URL="https://www.centos.org/"
[2025-06-05 01:59:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:59:55] 
[2025-06-05 01:59:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:59:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:59:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:59:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:59:55] 
[2025-06-05 01:59:55] 2025-06-04 23:59:36,882 | INFO     | **************************************
[2025-06-05 01:59:55] 2025-06-04 23:59:37,386 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | INFO     | sufficient remaining disk space (225002389504 B)
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | INFO     | update_server=False
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:59:55] 2025-06-04 23:59:37,399 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:59:55] 2025-06-04 23:59:37,400 | INFO     | aborting loop
[2025-06-05 01:59:55] 2025-06-04 23:59:38,018 | INFO     | all payload control threads have been joined
[2025-06-05 01:59:55] 2025-06-04 23:59:38,266 | INFO     | all job control threads have been joined
[2025-06-05 01:59:55] 2025-06-04 23:59:38,405 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:38,406 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:38,406 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:38,497 | INFO     | all data control threads have been joined
[2025-06-05 01:59:55] 2025-06-04 23:59:38,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:59:55] 2025-06-04 23:59:38,705 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:38,853 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:38,897 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,013 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,023 | INFO     | [payload] control thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,108 | INFO     | [job] validate thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,272 | INFO     | [job] control thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,503 | INFO     | [data] control thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,745 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:39,882 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:40,553 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:40,862 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:59:55] 2025-06-04 23:59:44,869 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:48,101 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:59:55] 2025-06-04 23:59:49,107 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:59:55] 2025-06-04 23:59:50,784 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924399929152)>', '<ExcThread(monitor, started 139923894023936)>']
[2025-06-05 01:59:55] 2025-06-04 23:59:51,476 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:59:55] 2025-06-04 23:59:51,476 | INFO     | [monitor] control thread has ended
[2025-06-05 01:59:55] 2025-06-04 23:59:55,810 | INFO     | all workflow threads have been joined
[2025-06-05 01:59:55] 2025-06-04 23:59:55,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:59:55] 2025-06-04 23:59:55,811 | INFO     | traces error code: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:55,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:59:55] 2025-06-04 23:59:55,859 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:59:55] 2025-06-04 23:59:55,862 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:59:55] 2025-06-04 23:59:55,866 [wrapper] pilotpid: 1301972
[2025-06-05 01:59:55] 2025-06-04 23:59:55,869 [wrapper] Pilot exit status: 0
[2025-06-05 01:59:55] 2025-06-04 23:59:55,877 [wrapper] pandaids: 6678313199
[2025-06-05 01:59:55] 2025-06-04 23:59:55,893 [wrapper] cleanup supervisor_pilot 1320599 1301973
[2025-06-05 01:59:55] 2025-06-04 23:59:55,896 [wrapper] Test setup, not cleaning
[2025-06-05 01:59:55] 2025-06-04 23:59:55,898 [wrapper] apfmon messages muted
[2025-06-05 01:59:55] 2025-06-04 23:59:55,901 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:59:55] 2025-06-04 23:59:55,904 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:59:55]  *** Error codes and diagnostics ***
[2025-06-05 01:59:55]     "exeErrorCode": 0,
[2025-06-05 01:59:55]     "exeErrorDiag": "",
[2025-06-05 01:59:55]     "pilotErrorCode": 0,
[2025-06-05 01:59:55]     "pilotErrorDiag": "",
[2025-06-05 01:59:55]  *** Listing of results directory ***
[2025-06-05 01:59:55] total 387208
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc    495897 Jun  4 06:04 pilot3.tar.gz
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc      5111 Jun  4 06:17 queuedata.json
[2025-06-05 01:59:55] -rwx------ 1 boinc boinc     37140 Jun  4 06:18 runpilot2-wrapper.sh
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc       100 Jun  5 00:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:59:55] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 00:40 run_atlas
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc       105 Jun  5 00:40 job.xml
[2025-06-05 01:59:55] -rw-r--r-- 2 boinc boinc 215935672 Jun  5 00:40 EVNT.45006593._002094.pool.root.1
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc      6680 Jun  5 00:40 init_data.xml
[2025-06-05 01:59:55] drwxrwx--x 2 boinc boinc      4096 Jun  5 00:40 shared
[2025-06-05 01:59:55] -rw-r--r-- 2 boinc boinc    508881 Jun  5 00:40 input.tar.gz
[2025-06-05 01:59:55] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:40 start_atlas.sh
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc         0 Jun  5 00:40 boinc_lockfile
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc      2525 Jun  5 00:40 pandaJob.out
[2025-06-05 01:59:55] -rw------- 1 boinc boinc    987032 Jun  5 00:40 agis_schedconf.cvmfs.json
[2025-06-05 01:59:55] -rw------- 1 boinc boinc   1598969 Jun  5 00:40 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:59:55] drwx------ 4 boinc boinc      4096 Jun  5 00:40 pilot3
[2025-06-05 01:59:55] -rw------- 1 boinc boinc        95 Jun  5 01:58 pilot_heartbeat.json
[2025-06-05 01:59:55] -rw------- 1 boinc boinc 175339172 Jun  5 01:59 HITS.45006595._052293.pool.root.1
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc       529 Jun  5 01:59 boinc_task_state.xml
[2025-06-05 01:59:55] -rw------- 1 boinc boinc      1016 Jun  5 01:59 memory_monitor_summary.json
[2025-06-05 01:59:55] -rw------- 1 boinc boinc    232454 Jun  5 01:59 log.45006595._052293.job.log.tgz.1
[2025-06-05 01:59:55] -rw------- 1 boinc boinc      7655 Jun  5 01:59 heartbeat.json
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc      8192 Jun  5 01:59 boinc_mmap_file
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc        27 Jun  5 01:59 wrapper_checkpoint.txt
[2025-06-05 01:59:55] -rw------- 1 boinc boinc      4552 Jun  5 01:59 pilotlog.txt
[2025-06-05 01:59:55] -rw------- 1 boinc boinc    463464 Jun  5 01:59 log.45006595._052293.job.log.1
[2025-06-05 01:59:55] -rw------- 1 boinc boinc       357 Jun  5 01:59 output.list
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc       620 Jun  5 01:59 runtime_log
[2025-06-05 01:59:55] -rw------- 1 boinc boinc    716800 Jun  5 01:59 result.tar.gz
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc      8733 Jun  5 01:59 runtime_log.err
[2025-06-05 01:59:55] -rw------- 1 boinc boinc       658 Jun  5 01:59 5sKLDmmlug7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmoBnKDm0gHH1n.diag
[2025-06-05 01:59:55] -rw-r--r-- 1 boinc boinc     21846 Jun  5 01:59 stderr.txt
[2025-06-05 01:59:56] HITS file was successfully produced:
[2025-06-05 01:59:56] -rw------- 1 boinc boinc 175339172 Jun  5 01:59 shared/HITS.pool.root.1
[2025-06-05 01:59:56]  *** Contents of shared directory: ***
[2025-06-05 01:59:56] total 383332
[2025-06-05 01:59:56] -rw-r--r-- 2 boinc boinc 215935672 Jun  5 00:40 ATLAS.root_0
[2025-06-05 01:59:56] -rw-r--r-- 2 boinc boinc    508881 Jun  5 00:40 input.tar.gz
[2025-06-05 01:59:56] -rw-r--r-- 2 boinc boinc     15093 Jun  5 00:40 start_atlas.sh
[2025-06-05 01:59:56] -rw------- 1 boinc boinc 175339172 Jun  5 01:59 HITS.pool.root.1
[2025-06-05 01:59:56] -rw------- 1 boinc boinc    716800 Jun  5 01:59 result.tar.gz
01:59:57 (1298328): run_atlas exited; CPU time 13488.994325
01:59:57 (1298328): called boinc_finish(0)

</stderr_txt>
]]>

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