Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:53:15 (32211): wrapper (7.7.26015): starting
22:53:15 (32211): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:53:15] Arguments: --nthreads 8
[2025-06-04 22:53:15] Threads: 8
[2025-06-04 22:53:15] Checking for CVMFS
[2025-06-04 22:53:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:53:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:53:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:53:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:53:16] 2.11.2.0 1205 33701 90956 146793 0 59 21118106 25165824 3137 130560 0 17356953 99.796 19488871 2235 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:53:16] CVMFS is ok
[2025-06-04 22:53:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:53:16] Checking for apptainer binary...
[2025-06-04 22:53:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:53:16] Running /usr/bin/apptainer --version
[2025-06-04 22:53:16] apptainer version 1.3.2-1.el7
[2025-06-04 22:53:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:23:42] cg-vwn325.simple-grid.lan
[2025-06-04 23:23:42] apptainer works
[2025-06-04 23:23:42] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:23:42] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:23:42] Starting ATLAS job with PandaID=6678981916
[2025-06-04 23:23:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:29:37]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:29:37] 2025-06-05 01:15:45,642 | INFO     | extracted standard info from prmon json
[2025-06-05 03:29:37] 2025-06-05 01:15:45,642 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:29:37] 2025-06-05 01:15:45,642 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:29:37] 2025-06-05 01:15:45,642 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:29:37] 2025-06-05 01:15:45,643 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:29:37] 2025-06-05 01:15:45,647 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:29:37] 2025-06-05 01:15:45,648 | INFO     | sum of square deviations: 3081657780.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | sum of deviations: 85877129129.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | mean x: 1749079489.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | mean y: 2411191.506976744
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | -- intersect: -48739511454.34189
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | intersect: -48739511454.34189
[2025-06-05 03:29:37] 2025-06-05 01:15:45,650 | INFO     | chi2: 7.996347533524768
[2025-06-05 03:29:37] 2025-06-05 01:15:45,651 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,652 | INFO     | sum of deviations: 97594038043.00005
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | mean x: 1749079336.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | mean y: 2419504.1714285715
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | -- intersect: -59441349338.32788
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | intersect: -59441349338.32788
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | chi2: 7.311543413085098
[2025-06-05 03:29:37] 2025-06-05 01:15:45,653 | INFO     | current chi2=7.311543413085098 (change=8.56396145325877 %)
[2025-06-05 03:29:37] 2025-06-05 01:15:45,654 | INFO     | right removable region: 209
[2025-06-05 03:29:37] 2025-06-05 01:15:45,654 | INFO     | sum of square deviations: 2871616632.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,655 | INFO     | sum of deviations: 11534762669.999992
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | mean x: 1749079641.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | mean y: 2465130.9523809524
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | -- intersect: -7023270243.085632
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | intersect: -7023270243.085632
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | chi2: 2.9101250107035415
[2025-06-05 03:29:37] 2025-06-05 01:15:45,656 | INFO     | current chi2=2.9101250107035415 (change=63.606821758273846 %)
[2025-06-05 03:29:37] 2025-06-05 01:15:45,657 | INFO     | sum of square deviations: 2671343110.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,658 | INFO     | sum of deviations: -33269248476.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | mean x: 1749079794.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | mean y: 2499086.7902439022
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | -- intersect: 21785762364.76613
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | intersect: 21785762364.76613
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | chi2: 0.9735138831293524
[2025-06-05 03:29:37] 2025-06-05 01:15:45,659 | INFO     | current chi2=0.9735138831293524 (change=66.54735176156576 %)
[2025-06-05 03:29:37] 2025-06-05 01:15:45,660 | INFO     | sum of square deviations: 2480604650.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,661 | INFO     | sum of deviations: -35978911023.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,661 | INFO     | mean x: 1749079946.5
[2025-06-05 03:29:37] 2025-06-05 01:15:45,662 | INFO     | mean y: 2501200.635
[2025-06-05 03:29:37] 2025-06-05 01:15:45,662 | INFO     | -- intersect: 25371312699.1185
[2025-06-05 03:29:37] 2025-06-05 01:15:45,662 | INFO     | intersect: 25371312699.1185
[2025-06-05 03:29:37] 2025-06-05 01:15:45,662 | INFO     | chi2: 0.9353338152063347
[2025-06-05 03:29:37] 2025-06-05 01:15:45,663 | INFO     | current chi2=0.9353338152063347 (change=3.9218822232188546 %)
[2025-06-05 03:29:37] 2025-06-05 01:15:45,663 | INFO     | left removable region: 30
[2025-06-05 03:29:37] 2025-06-05 01:15:45,663 | INFO     | sum of square deviations: 1778377530.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,664 | INFO     | sum of deviations: -1903188654.0000005
[2025-06-05 03:29:37] 2025-06-05 01:15:45,664 | INFO     | mean x: 1749080221.0
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | mean y: 2493230.6648044693
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | -- intersect: 1874328414.920092
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | intersect: 1874328414.920092
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | chi2: 0.04882020116127822
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | -- intersect: 1874328414.920092
[2025-06-05 03:29:37] 2025-06-05 01:15:45,665 | INFO     | current memory leak: -1.07 B/s (using 179 data points, chi2=0.05)
[2025-06-05 03:29:37] 2025-06-05 01:15:45,666 | INFO     | ..............................
[2025-06-05 03:29:37] 2025-06-05 01:15:45,666 | INFO     | . Timing measurements:
[2025-06-05 03:29:37] 2025-06-05 01:15:45,666 | INFO     | . get job = 0 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,666 | INFO     | . initial setup = 10 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | . payload setup = 181 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | . stage-in = 0 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | . payload execution = 13238 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | . stage-out = 1 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | . log creation = 0 s
[2025-06-05 03:29:37] 2025-06-05 01:15:45,667 | INFO     | ..............................
[2025-06-05 03:29:37] 2025-06-05 01:15:46,212 | INFO     | 
[2025-06-05 03:29:37] 2025-06-05 01:15:46,212 | INFO     | job summary report
[2025-06-05 03:29:37] 2025-06-05 01:15:46,213 | INFO     | --------------------------------------------------
[2025-06-05 03:29:37] 2025-06-05 01:15:46,213 | INFO     | PanDA job id: 6678981916
[2025-06-05 03:29:37] 2025-06-05 01:15:46,213 | INFO     | task id: 45006595
[2025-06-05 03:29:37] 2025-06-05 01:15:46,213 | INFO     | errors: (none)
[2025-06-05 03:29:37] 2025-06-05 01:15:46,215 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:29:37] 2025-06-05 01:15:46,215 | INFO     | pilot state: finished 
[2025-06-05 03:29:37] 2025-06-05 01:15:46,215 | INFO     | transexitcode: 0
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | exeerrorcode: 0
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | exeerrordiag: 
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | exitcode: 0
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | exitmsg: OK
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | cpuconsumptiontime: 48768 s
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | nevents: 400
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | neventsw: 0
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | pid: 29411
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | pgrp: 29411
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | corecount: 8
[2025-06-05 03:29:37] 2025-06-05 01:15:46,216 | INFO     | event service: False
[2025-06-05 03:29:37] 2025-06-05 01:15:46,217 | INFO     | sizes: {0: 2396461, 1: 2397147, 2: 2397346, 13: 2397346, 23: 2397402, 34: 2397430, 45: 2397586, 56: 2397614, 66: 2397642, 77: 2397670, 88: 2397726, 94: 2398240, 99
[2025-06-05 03:29:37] 2025-06-05 01:15:46,217 | INFO     | --------------------------------------------------
[2025-06-05 03:29:37] 2025-06-05 01:15:46,217 | INFO     | 
[2025-06-05 03:29:37] 2025-06-05 01:15:46,217 | INFO     | executing command: ls -lF /var/lib/boinc/slots/19
[2025-06-05 03:29:37] 2025-06-05 01:15:46,679 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,679 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,679 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,679 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | job 6678981916 has completed (purged errors)
[2025-06-05 03:29:37] 2025-06-05 01:15:46,681 | INFO     | overall cleanup function is called
[2025-06-05 03:29:37] 2025-06-05 01:15:47,690 | INFO     | --- collectZombieJob: --- 10, [29411]
[2025-06-05 03:29:37] 2025-06-05 01:15:47,690 | INFO     | zombie collector waiting for pid 29411
[2025-06-05 03:29:37] 2025-06-05 01:15:47,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:29:37] 2025-06-05 01:15:47,691 | INFO     | collected zombie processes
[2025-06-05 03:29:37] 2025-06-05 01:15:47,691 | INFO     | will attempt to kill all subprocesses of pid=29411
[2025-06-05 03:29:37] 2025-06-05 01:15:47,828 | INFO     | process IDs to be killed: [29411] (in reverse order)
[2025-06-05 03:29:37] 2025-06-05 01:15:48,787 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:29:37] 2025-06-05 01:15:48,787 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:29:37] 2025-06-05 01:15:48,791 | INFO     | did not find any defunct processes belonging to 29411
[2025-06-05 03:29:37] 2025-06-05 01:15:48,794 | INFO     | did not find any defunct processes belonging to 29411
[2025-06-05 03:29:37] 2025-06-05 01:15:48,794 | INFO     | ready for new job
[2025-06-05 03:29:37] 2025-06-05 01:15:48,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:29:37] 2025-06-05 01:15:48,796 | INFO     | **************************************
[2025-06-05 03:29:37] 2025-06-05 01:15:48,796 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:29:37] 2025-06-05 01:15:48,796 | INFO     | **************************************
[2025-06-05 03:29:37] 2025-06-05 01:15:48,796 | INFO     | 
[2025-06-05 03:29:37] 2025-06-05 01:15:48,797 | INFO     | pilot is running in a VM
[2025-06-05 03:29:37] 2025-06-05 01:15:48,797 | INFO     | architecture information:
[2025-06-05 03:29:37] 2025-06-05 01:15:48,806 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:29:37] 2025-06-05 01:15:49,178 | INFO     | cat /etc/os-release:
[2025-06-05 03:29:37] NAME="CentOS Linux"
[2025-06-05 03:29:37] VERSION="7 (Core)"
[2025-06-05 03:29:37] ID="centos"
[2025-06-05 03:29:37] ID_LIKE="rhel fedora"
[2025-06-05 03:29:37] VERSION_ID="7"
[2025-06-05 03:29:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:29:37] ANSI_COLOR="0;31"
[2025-06-05 03:29:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:29:37] HOME_URL="https://www.centos.org/"
[2025-06-05 03:29:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:29:37] 
[2025-06-05 03:29:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:29:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:29:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:29:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:29:37] 
[2025-06-05 03:29:37] 2025-06-05 01:15:49,178 | INFO     | **************************************
[2025-06-05 03:29:37] 2025-06-05 01:15:49,681 | INFO     | executing command: df -mP /var/lib/boinc/slots/19
[2025-06-05 03:29:37] 2025-06-05 01:15:50,004 | INFO     | sufficient remaining disk space (497383636992 B)
[2025-06-05 03:29:37] 2025-06-05 01:15:50,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:29:37] 2025-06-05 01:15:50,005 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:29:37] 2025-06-05 01:15:50,005 | INFO     | update_server=False
[2025-06-05 03:29:37] 2025-06-05 01:15:50,005 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:29:37] 2025-06-05 01:15:50,005 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:29:37] 2025-06-05 01:15:50,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:29:37] 2025-06-05 01:15:50,006 | INFO     | aborting loop
[2025-06-05 03:29:37] 2025-06-05 01:15:50,009 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 03:29:37] 2025-06-05 01:15:50,010 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:29:37] 2025-06-05 01:15:50,010 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:29:37] 2025-06-05 01:15:50,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:29:37] 2025-06-05 01:15:50,473 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:29:37] 2025-06-05 01:15:50,477 | INFO     | all job control threads have been joined
[2025-06-05 03:29:37] 2025-06-05 01:15:50,828 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:29:37] 2025-06-05 01:15:50,973 | INFO     | all payload control threads have been joined
[2025-06-05 03:29:37] 2025-06-05 01:15:51,011 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,012 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,041 | INFO     | all data control threads have been joined
[2025-06-05 03:29:37] 2025-06-05 01:15:51,129 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,306 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,361 | INFO     | [job] validate thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,402 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,483 | INFO     | [job] control thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,744 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,834 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:51,978 | INFO     | [payload] control thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:52,047 | INFO     | [data] control thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:52,187 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:52,256 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:52,294 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:52,480 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:54,014 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:29:37] 2025-06-05 01:15:56,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140191953913664)>', '<ExcThread(monitor, started 140191641605888)>']
[2025-06-05 03:29:37] 2025-06-05 01:15:57,052 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:29:37] 2025-06-05 01:15:57,052 | INFO     | [monitor] control thread has ended
[2025-06-05 03:29:37] 2025-06-05 01:16:01,093 | INFO     | all workflow threads have been joined
[2025-06-05 03:29:37] 2025-06-05 01:16:01,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:29:37] 2025-06-05 01:16:01,094 | INFO     | traces error code: 0
[2025-06-05 03:29:37] 2025-06-05 01:16:01,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:29:37] 2025-06-05 01:16:01,491 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:29:37] 2025-06-05 01:16:01,638 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:29:37] 2025-06-05 01:16:01,686 [wrapper] pilotpid: 22777
[2025-06-05 03:29:37] 2025-06-05 01:16:01,712 [wrapper] Pilot exit status: 0
[2025-06-05 03:29:37] 2025-06-05 01:16:02,176 [wrapper] pandaids: 6678981916
[2025-06-05 03:29:37] 2025-06-05 01:16:03,216 [wrapper] cleanup supervisor_pilot  5945 22778
[2025-06-05 03:29:37] 2025-06-05 01:16:03,360 [wrapper] Test setup, not cleaning
[2025-06-05 03:29:37] 2025-06-05 01:16:03,460 [wrapper] apfmon messages muted
[2025-06-05 03:29:37] 2025-06-05 01:16:03,543 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:29:37] 2025-06-05 01:16:03,629 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:29:37]  *** Error codes and diagnostics ***
[2025-06-05 03:29:37]     "exeErrorCode": 0,
[2025-06-05 03:29:37]     "exeErrorDiag": "",
[2025-06-05 03:29:37]     "pilotErrorCode": 0,
[2025-06-05 03:29:37]     "pilotErrorDiag": "",
[2025-06-05 03:29:37]  *** Listing of results directory ***
[2025-06-05 03:29:37] total 391444
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc    495897 Jun  4 10:31 pilot3.tar.gz
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc      5111 Jun  4 10:36 queuedata.json
[2025-06-05 03:29:37] -rwx------. 1 boinc boinc     37140 Jun  4 10:37 runpilot2-wrapper.sh
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:29:37] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:53 run_atlas
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:53 job.xml
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc      6392 Jun  4 22:53 init_data.xml
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc 218103965 Jun  4 22:53 EVNT.45006593._001311.pool.root.1
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:53 start_atlas.sh
[2025-06-05 03:29:37] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:53 shared
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc    508886 Jun  4 22:53 input.tar.gz
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:53 boinc_lockfile
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc      2523 Jun  4 23:23 pandaJob.out
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc    987032 Jun  4 23:27 agis_schedconf.cvmfs.json
[2025-06-05 03:29:37] drwx------. 4 boinc boinc      4096 Jun  4 23:27 pilot3
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc 175840120 Jun  5 03:12 HITS.45006595._055744.pool.root.1
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:13 boinc_task_state.xml
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc      1013 Jun  5 03:14 memory_monitor_summary.json
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc   1598969 Jun  5 03:14 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc    367755 Jun  5 03:14 log.45006595._055744.job.log.tgz.1
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc        95 Jun  5 03:15 pilot_heartbeat.json
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc      7686 Jun  5 03:15 heartbeat.json
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc      4540 Jun  5 03:16 pilotlog.txt
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc   1172244 Jun  5 03:16 log.45006595._055744.job.log.1
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc       357 Jun  5 03:16 output.list
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:16 runtime_log
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc   1556480 Jun  5 03:16 result.tar.gz
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc       657 Jun  5 03:16 ZSzLDmcnyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7nnKDmt6Gvtn.diag
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc      8673 Jun  5 03:16 runtime_log.err
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc      8192 Jun  5 03:29 boinc_mmap_file
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc        28 Jun  5 03:29 wrapper_checkpoint.txt
[2025-06-05 03:29:37] -rw-r--r--. 1 boinc boinc     20500 Jun  5 03:29 stderr.txt
[2025-06-05 03:29:37] HITS file was successfully produced:
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc 175840120 Jun  5 03:12 shared/HITS.pool.root.1
[2025-06-05 03:29:37]  *** Contents of shared directory: ***
[2025-06-05 03:29:37] total 386752
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc 218103965 Jun  4 22:53 ATLAS.root_0
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:53 start_atlas.sh
[2025-06-05 03:29:37] -rw-r--r--. 2 boinc boinc    508886 Jun  4 22:53 input.tar.gz
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc 175840120 Jun  5 03:12 HITS.pool.root.1
[2025-06-05 03:29:37] -rw-------. 1 boinc boinc   1556480 Jun  5 03:16 result.tar.gz
03:29:39 (32211): run_atlas exited; CPU time 48968.684237
03:29:39 (32211): called boinc_finish(0)

</stderr_txt>
]]>

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