Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:32:58 (51689): wrapper (7.7.26015): starting
08:32:58 (51689): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:32:58] Arguments: --nthreads 8
[2025-06-04 08:32:58] Threads: 8
[2025-06-04 08:32:58] Checking for CVMFS
[2025-06-04 08:32:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:32:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:32:59] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:32:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:32:59] 2.11.2.0 10304 12652 321580 146780 3 357 15856695 18432000 19819 130560 0 108821563 99.326 145654864 50345 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:32:59] CVMFS is ok
[2025-06-04 08:32:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:32:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:32:59] Further information can be found at the LHC@home message board.
[2025-06-04 08:32:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:32:59] Checking for apptainer binary...
[2025-06-04 08:32:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:32:59] Running /usr/bin/apptainer --version
[2025-06-04 08:32:59] apptainer version 1.3.2-1.el7
[2025-06-04 08:32:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:33:00] c-212-11.aglt2.org
[2025-06-04 08:33:00] apptainer works
[2025-06-04 08:33:00] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:33:00] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:33:00] Starting ATLAS job with PandaID=6678975761
[2025-06-04 08:33:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:45:04]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:45:04]  lfn=log.45006595._055728.job.log.tgz.1
[2025-06-04 09:45:04]  mtime=0
[2025-06-04 09:45:04]  protocol_id=None
[2025-06-04 09:45:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:45:04]  replicas=None
[2025-06-04 09:45:04]  scope=mc23_13p6TeV
[2025-06-04 09:45:04]  status=None
[2025-06-04 09:45:04]  status_code=0
[2025-06-04 09:45:04]  storage_token=
[2025-06-04 09:45:04]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678975761/log.45006595._055728.job.log.tgz.1
[2025-06-04 09:45:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/96/log.45006595._055728.job.log.tgz.1
[2025-06-04 09:45:04]  workdir=None
[2025-06-04 09:45:04] ]
[2025-06-04 09:45:04] 2025-06-04 13:44:33,807 | INFO     | transferring file log.45006595._055728.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678975761/log.45006595._055728.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:45:04] 2025-06-04 13:44:33,808 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678975761/log.45006595._055728.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._055728.job
[2025-06-04 09:45:04] 2025-06-04 13:44:33,915 | INFO     | adding to output.list: log.45006595._055728.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/eb/96/log.45006595._055728.job.log.tg
[2025-06-04 09:45:04] 2025-06-04 13:44:33,916 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:45:04] 2025-06-04 13:44:33,916 | INFO     | summary of transferred files:
[2025-06-04 09:45:04] 2025-06-04 13:44:33,916 | INFO     |  -- lfn=log.45006595._055728.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:45:04] 2025-06-04 13:44:33,916 | INFO     | stage-out finished correctly
[2025-06-04 09:45:04] 2025-06-04 13:44:33,964 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:45:04] 2025-06-04 13:44:34,790 | INFO     | job 6678975761 has state=finished
[2025-06-04 09:45:04] 2025-06-04 13:44:34,791 | INFO     | preparing for final server update for job 6678975761 in state='finished'
[2025-06-04 09:45:04] 2025-06-04 13:44:34,791 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:45:04] 2025-06-04 13:44:34,791 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:45:04] 2025-06-04 13:44:34,791 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:45:04] 2025-06-04 13:44:34,791 | INFO     | job 6678975761 has finished - writing final server update
[2025-06-04 09:45:04] 2025-06-04 13:44:34,792 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:45:04] 2025-06-04 13:44:34,796 | INFO     | executing command: lscpu
[2025-06-04 09:45:04] 2025-06-04 13:44:34,925 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:45:04] 2025-06-04 13:44:35,363 | WARNING  | process 66178 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:45:04] 2025-06-04 13:44:35,364 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678975761/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:45:04] 2025-06-04 13:44:35,617 | INFO     | number of running child processes to parent process 66178: 1
[2025-06-04 09:45:04] 2025-06-04 13:44:35,618 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:45:04] 2025-06-04 13:44:38,122 | INFO     | monitor loop #318: job 0:6678975761 is in state 'finished'
[2025-06-04 09:45:04] 2025-06-04 13:44:38,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:45:04] 2025-06-04 13:44:40,627 | INFO     | monitor loop #319: job 0:6678975761 is in state 'finished'
[2025-06-04 09:45:04] 2025-06-04 13:44:40,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:45:04] 2025-06-04 13:44:42,747 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:45:04] 2025-06-04 13:44:42,748 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678975761/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:45:04] 2025-06-04 13:44:42,748 | INFO     | extracted standard info from prmon json
[2025-06-04 09:45:04] 2025-06-04 13:44:42,748 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:45:04] 2025-06-04 13:44:42,748 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:45:04] 2025-06-04 13:44:42,749 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:45:04] 2025-06-04 13:44:42,749 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:45:04] 2025-06-04 13:44:42,750 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:45:04] 2025-06-04 13:44:42,750 | INFO     | sum of square deviations: 77515872.0
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | sum of deviations: -1614160283.9999998
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | mean x: 1749042614.0
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | mean y: 2525546.507936508
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | -- intersect: 36423906738.50874
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | intersect: 36423906738.50874
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | chi2: 0.0057339053360783085
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | -- intersect: 36423906738.50874
[2025-06-04 09:45:04] 2025-06-04 13:44:42,751 | INFO     | current memory leak: -20.82 B/s (using 63 data points, chi2=0.01)
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | ..............................
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . Timing measurements:
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . get job = 0 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . initial setup = 2 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . payload setup = 5 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . stage-in = 0 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . payload execution = 4255 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . stage-out = 0 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | . log creation = 0 s
[2025-06-04 09:45:04] 2025-06-04 13:44:42,752 | INFO     | ..............................
[2025-06-04 09:45:04] 2025-06-04 13:44:43,204 | INFO     | 
[2025-06-04 09:45:04] 2025-06-04 13:44:43,204 | INFO     | job summary report
[2025-06-04 09:45:04] 2025-06-04 13:44:43,204 | INFO     | --------------------------------------------------
[2025-06-04 09:45:04] 2025-06-04 13:44:43,204 | INFO     | PanDA job id: 6678975761
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | task id: 45006595
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | errors: (none)
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | pilot state: finished 
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | transexitcode: 0
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | exeerrorcode: 0
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | exeerrordiag: 
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | exitcode: 0
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | exitmsg: OK
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | cpuconsumptiontime: 28513 s
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | nevents: 400
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | neventsw: 0
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | pid: 66178
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | pgrp: 66178
[2025-06-04 09:45:04] 2025-06-04 13:44:43,205 | INFO     | corecount: 8
[2025-06-04 09:45:04] 2025-06-04 13:44:43,206 | INFO     | event service: False
[2025-06-04 09:45:04] 2025-06-04 13:44:43,206 | INFO     | sizes: {0: 2397059, 1: 2397314, 4: 2397520, 11: 2397548, 4265: 2423476, 4266: 2432601, 4275: 2432715}
[2025-06-04 09:45:04] 2025-06-04 13:44:43,206 | INFO     | --------------------------------------------------
[2025-06-04 09:45:04] 2025-06-04 13:44:43,206 | INFO     | 
[2025-06-04 09:45:04] 2025-06-04 13:44:43,206 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 09:45:04] 2025-06-04 13:44:43,233 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,234 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | job 6678975761 has completed (purged errors)
[2025-06-04 09:45:04] 2025-06-04 13:44:43,235 | INFO     | overall cleanup function is called
[2025-06-04 09:45:04] 2025-06-04 13:44:44,242 | INFO     | --- collectZombieJob: --- 10, [66178]
[2025-06-04 09:45:04] 2025-06-04 13:44:44,242 | INFO     | zombie collector waiting for pid 66178
[2025-06-04 09:45:04] 2025-06-04 13:44:44,243 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:45:04] 2025-06-04 13:44:44,243 | INFO     | collected zombie processes
[2025-06-04 09:45:04] 2025-06-04 13:44:44,243 | INFO     | will attempt to kill all subprocesses of pid=66178
[2025-06-04 09:45:04] 2025-06-04 13:44:44,501 | INFO     | process IDs to be killed: [66178] (in reverse order)
[2025-06-04 09:45:04] 2025-06-04 13:44:44,621 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:45:04] 2025-06-04 13:44:44,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:45:04] 2025-06-04 13:44:44,632 | INFO     | did not find any defunct processes belonging to 66178
[2025-06-04 09:45:04] 2025-06-04 13:44:44,642 | INFO     | did not find any defunct processes belonging to 66178
[2025-06-04 09:45:04] 2025-06-04 13:44:44,642 | INFO     | ready for new job
[2025-06-04 09:45:04] 2025-06-04 13:44:44,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:45:04] 2025-06-04 13:44:44,645 | INFO     | **************************************
[2025-06-04 09:45:04] 2025-06-04 13:44:44,645 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:45:04] 2025-06-04 13:44:44,645 | INFO     | **************************************
[2025-06-04 09:45:04] 2025-06-04 13:44:44,645 | INFO     | 
[2025-06-04 09:45:04] 2025-06-04 13:44:44,650 | INFO     | architecture information:
[2025-06-04 09:45:04] 2025-06-04 13:44:44,650 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:45:04] 2025-06-04 13:44:44,776 | INFO     | cat /etc/os-release:
[2025-06-04 09:45:04] NAME="CentOS Linux"
[2025-06-04 09:45:04] VERSION="7 (Core)"
[2025-06-04 09:45:04] ID="centos"
[2025-06-04 09:45:04] ID_LIKE="rhel fedora"
[2025-06-04 09:45:04] VERSION_ID="7"
[2025-06-04 09:45:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:45:04] ANSI_COLOR="0;31"
[2025-06-04 09:45:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:45:04] HOME_URL="https://www.centos.org/"
[2025-06-04 09:45:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:45:04] 
[2025-06-04 09:45:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:45:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:45:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:45:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:45:04] 
[2025-06-04 09:45:04] 2025-06-04 13:44:44,776 | INFO     | **************************************
[2025-06-04 09:45:04] 2025-06-04 13:44:45,278 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 09:45:04] 2025-06-04 13:44:45,449 | INFO     | sufficient remaining disk space (103797489664 B)
[2025-06-04 09:45:04] 2025-06-04 13:44:45,449 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:45:04] 2025-06-04 13:44:45,449 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:45:04] 2025-06-04 13:44:45,449 | INFO     | update_server=False
[2025-06-04 09:45:04] 2025-06-04 13:44:45,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:45:04] 2025-06-04 13:44:45,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:45:04] 2025-06-04 13:44:45,450 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:45:04] 2025-06-04 13:44:45,639 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 09:45:04] 2025-06-04 13:44:45,639 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 09:45:04] 2025-06-04 13:44:45,639 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:45:04] 2025-06-04 13:44:45,639 | INFO     | will abort loop
[2025-06-04 09:45:04] 2025-06-04 13:44:45,752 | INFO     | all payload control threads have been joined
[2025-06-04 09:45:04] 2025-06-04 13:44:46,256 | INFO     | all data control threads have been joined
[2025-06-04 09:45:04] 2025-06-04 13:44:46,264 | INFO     | all job control threads have been joined
[2025-06-04 09:45:04] 2025-06-04 13:44:46,267 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:45:04] 2025-06-04 13:44:46,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:45:04] 2025-06-04 13:44:46,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:45:04] 2025-06-04 13:44:46,455 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:46,490 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:46,645 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:46,758 | INFO     | [payload] control thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:46,869 | INFO     | [job] validate thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,094 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,262 | INFO     | [data] control thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,270 | INFO     | [job] control thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,278 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,456 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,465 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,600 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,610 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:47,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:45:04] 2025-06-04 13:44:48,847 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:49,459 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:56,360 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:45:04] 2025-06-04 13:44:57,365 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:45:04] 2025-06-04 13:44:59,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140709421082432)>', '<ExcThread(monitor, started 140708690257664)>']
[2025-06-04 09:45:04] 2025-06-04 13:44:59,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:45:04] 2025-06-04 13:44:59,333 | INFO     | [monitor] control thread has ended
[2025-06-04 09:45:04] 2025-06-04 13:45:04,103 | INFO     | all workflow threads have been joined
[2025-06-04 09:45:04] 2025-06-04 13:45:04,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:45:04] 2025-06-04 13:45:04,104 | INFO     | traces error code: 0
[2025-06-04 09:45:04] 2025-06-04 13:45:04,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:45:04] 2025-06-04 13:45:04,241 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:45:04] 2025-06-04 13:45:04,243 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:45:04] 2025-06-04 13:45:04,245 [wrapper] pilotpid: 55526
[2025-06-04 09:45:04] 2025-06-04 13:45:04,247 [wrapper] Pilot exit status: 0
[2025-06-04 09:45:04] 2025-06-04 13:45:04,255 [wrapper] pandaids: 6678975761
[2025-06-04 09:45:04] 2025-06-04 13:45:04,356 [wrapper] cleanup supervisor_pilot 23522 55527
[2025-06-04 09:45:04] 2025-06-04 13:45:04,392 [wrapper] Test setup, not cleaning
[2025-06-04 09:45:04] 2025-06-04 13:45:04,431 [wrapper] apfmon messages muted
[2025-06-04 09:45:04] 2025-06-04 13:45:04,477 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:45:04] 2025-06-04 13:45:04,527 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:45:04]  *** Error codes and diagnostics ***
[2025-06-04 09:45:04]     "exeErrorCode": 0,
[2025-06-04 09:45:04]     "exeErrorDiag": "",
[2025-06-04 09:45:04]     "pilotErrorCode": 0,
[2025-06-04 09:45:04]     "pilotErrorDiag": "",
[2025-06-04 09:45:04]  *** Listing of results directory ***
[2025-06-04 09:45:04] total 388560
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:32 queuedata.json
[2025-06-04 09:45:04] -rwx------ 1 boincer umatlas     37140 Jun  4 04:32 runpilot2-wrapper.sh
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:45:04] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:32 run_atlas
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:32 job.xml
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas 214617823 Jun  4 08:32 EVNT.45006593._001281.pool.root.1
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:32 start_atlas.sh
[2025-06-04 09:45:04] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:32 shared
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 08:32 input.tar.gz
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:32 boinc_lockfile
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas      2522 Jun  4 08:33 pandaJob.out
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas    986811 Jun  4 08:33 agis_schedconf.cvmfs.json
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas   1598969 Jun  4 08:33 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:45:04] drwx------ 4 boincer umatlas      4096 Jun  4 08:33 pilot3
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas      6387 Jun  4 09:36 init_data.xml
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas 178018077 Jun  4 09:44 HITS.45006595._055728.pool.root.1
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas       529 Jun  4 09:44 boinc_task_state.xml
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas        95 Jun  4 09:44 pilot_heartbeat.json
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas      1041 Jun  4 09:44 memory_monitor_summary.json
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas    286267 Jun  4 09:44 log.45006595._055728.job.log.tgz.1
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas      7705 Jun  4 09:44 heartbeat.json
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 09:45 boinc_mmap_file
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas        27 Jun  4 09:45 wrapper_checkpoint.txt
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas      4612 Jun  4 09:45 pilotlog.txt
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas    425958 Jun  4 09:45 log.45006595._055728.job.log.1
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas       357 Jun  4 09:45 output.list
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas       620 Jun  4 09:45 runtime_log
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas    727040 Jun  4 09:45 result.tar.gz
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas       656 Jun  4 09:45 XnLLDmYjyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqnnKDm1S0WFm.diag
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas      8659 Jun  4 09:45 runtime_log.err
[2025-06-04 09:45:04] -rw-r--r-- 1 boincer umatlas     21528 Jun  4 09:45 stderr.txt
[2025-06-04 09:45:04] HITS file was successfully produced:
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas 178018077 Jun  4 09:44 shared/HITS.pool.root.1
[2025-06-04 09:45:04]  *** Contents of shared directory: ***
[2025-06-04 09:45:04] total 384672
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas 214617823 Jun  4 08:32 ATLAS.root_0
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:32 start_atlas.sh
[2025-06-04 09:45:04] -rw-r--r-- 2 boincer umatlas    508880 Jun  4 08:32 input.tar.gz
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas 178018077 Jun  4 09:44 HITS.pool.root.1
[2025-06-04 09:45:04] -rw------- 1 boincer umatlas    727040 Jun  4 09:45 result.tar.gz
09:45:06 (51689): run_atlas exited; CPU time 28426.748734
09:45:06 (51689): called boinc_finish(0)

</stderr_txt>
]]>

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