Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:38:54 (47075): wrapper (7.7.26015): starting
08:38:54 (47075): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:38:54] Arguments: --nthreads 8
[2025-06-04 08:38:54] Threads: 8
[2025-06-04 08:38:54] Checking for CVMFS
[2025-06-04 08:38:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:38:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:38:54] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:38:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:38:54] 2.11.2.0 39063 12848 324416 146780 3 453 15427152 18432001 12520 130560 1 111743230 99.276 153702931 48919 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:38:54] CVMFS is ok
[2025-06-04 08:38:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:38:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:38:54] Further information can be found at the LHC@home message board.
[2025-06-04 08:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:38:54] Checking for apptainer binary...
[2025-06-04 08:38:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:38:54] Running /usr/bin/apptainer --version
[2025-06-04 08:38:54] apptainer version 1.3.2-1.el7
[2025-06-04 08:38:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:38:55] c-212-9.aglt2.org
[2025-06-04 08:38:55] apptainer works
[2025-06-04 08:38:55] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:38:55] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:38:55] Starting ATLAS job with PandaID=6678969715
[2025-06-04 08:38:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:49:59]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:49:59]  workdir=None
[2025-06-04 09:49:59] ]
[2025-06-04 09:49:59] 2025-06-04 13:49:16,459 | INFO     | transferring file log.45006595._055719.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678969715/log.45006595._055719.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:49:59] 2025-06-04 13:49:16,459 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678969715/log.45006595._055719.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._055719.job
[2025-06-04 09:49:59] 2025-06-04 13:49:16,517 | INFO     | adding to output.list: log.45006595._055719.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/47/log.45006595._055719.job.log.tg
[2025-06-04 09:49:59] 2025-06-04 13:49:16,517 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:49:59] 2025-06-04 13:49:16,518 | INFO     | summary of transferred files:
[2025-06-04 09:49:59] 2025-06-04 13:49:16,518 | INFO     |  -- lfn=log.45006595._055719.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:49:59] 2025-06-04 13:49:16,518 | INFO     | stage-out finished correctly
[2025-06-04 09:49:59] 2025-06-04 13:49:18,708 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:49:59] 2025-06-04 13:49:18,785 | INFO     | job 6678969715 has state=finished
[2025-06-04 09:49:59] 2025-06-04 13:49:18,785 | INFO     | preparing for final server update for job 6678969715 in state='finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:18,786 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:49:59] 2025-06-04 13:49:18,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:49:59] 2025-06-04 13:49:18,786 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:49:59] 2025-06-04 13:49:18,786 | INFO     | job 6678969715 has finished - writing final server update
[2025-06-04 09:49:59] 2025-06-04 13:49:18,786 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:49:59] 2025-06-04 13:49:18,791 | INFO     | executing command: lscpu
[2025-06-04 09:49:59] 2025-06-04 13:49:18,987 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:49:59] 2025-06-04 13:49:21,576 | WARNING  | process 57532 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:49:59] 2025-06-04 13:49:21,576 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678969715/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:49:59] 2025-06-04 13:49:21,891 | INFO     | number of running child processes to parent process 57532: 1
[2025-06-04 09:49:59] 2025-06-04 13:49:21,891 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:49:59] 2025-06-04 13:49:24,396 | INFO     | monitor loop #313: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:24,397 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:26,901 | INFO     | monitor loop #314: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:26,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:29,406 | INFO     | monitor loop #315: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:29,407 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:31,910 | INFO     | monitor loop #316: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:31,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:34,415 | INFO     | monitor loop #317: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:34,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:36,920 | INFO     | monitor loop #318: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:36,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:36,987 | INFO     | PID=50851 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 09:49:59] 2025-06-04 13:49:36,987 | INFO     | .. there are 18 such processes running
[2025-06-04 09:49:59] 2025-06-04 13:49:39,423 | INFO     | monitor loop #319: job 0:6678969715 is in state 'finished'
[2025-06-04 09:49:59] 2025-06-04 13:49:39,423 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,711 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:49:59] 2025-06-04 13:49:41,711 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678969715/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,712 | INFO     | extracted standard info from prmon json
[2025-06-04 09:49:59] 2025-06-04 13:49:41,712 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:49:59] 2025-06-04 13:49:41,712 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:49:59] 2025-06-04 13:49:41,712 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:49:59] 2025-06-04 13:49:41,712 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:49:59] 2025-06-04 13:49:41,713 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:49:59] 2025-06-04 13:49:41,713 | INFO     | sum of square deviations: 73882315.5
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | sum of deviations: -943543852.0
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | mean x: 1749042935.5
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | mean y: 2499001.1612903224
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | -- intersect: 22339355899.95539
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | intersect: 22339355899.95539
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | chi2: 0.0026089886732179345
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | -- intersect: 22339355899.95539
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | current memory leak: -12.77 B/s (using 62 data points, chi2=0.00)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | ..............................
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . Timing measurements:
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . get job = 0 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . initial setup = 2 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . payload setup = 6 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . stage-in = 0 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . payload execution = 4186 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . stage-out = 0 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | . log creation = 0 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,714 | INFO     | ..............................
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | 
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | job summary report
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | --------------------------------------------------
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | PanDA job id: 6678969715
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | task id: 45006595
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | errors: (none)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | pilot state: finished 
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | transexitcode: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | exeerrorcode: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | exeerrordiag: 
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | exitcode: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | exitmsg: OK
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | cpuconsumptiontime: 28607 s
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | nevents: 400
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | neventsw: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:41,756 | INFO     | pid: 57532
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | pgrp: 57532
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | corecount: 8
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | event service: False
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | sizes: {0: 2397290, 3: 2397496, 11: 2397524, 4196: 2423458, 4197: 2423457, 4198: 2432454, 4200: 2432638, 4223: 2432808}
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | --------------------------------------------------
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | 
[2025-06-04 09:49:59] 2025-06-04 13:49:41,757 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 09:49:59] 2025-06-04 13:49:41,775 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,776 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,777 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,777 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,777 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:49:59] 2025-06-04 13:49:41,777 | INFO     | job 6678969715 has completed (purged errors)
[2025-06-04 09:49:59] 2025-06-04 13:49:41,777 | INFO     | overall cleanup function is called
[2025-06-04 09:49:59] 2025-06-04 13:49:42,784 | INFO     | --- collectZombieJob: --- 10, [57532]
[2025-06-04 09:49:59] 2025-06-04 13:49:42,785 | INFO     | zombie collector waiting for pid 57532
[2025-06-04 09:49:59] 2025-06-04 13:49:42,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:49:59] 2025-06-04 13:49:42,785 | INFO     | collected zombie processes
[2025-06-04 09:49:59] 2025-06-04 13:49:42,785 | INFO     | will attempt to kill all subprocesses of pid=57532
[2025-06-04 09:49:59] 2025-06-04 13:49:43,084 | INFO     | process IDs to be killed: [57532] (in reverse order)
[2025-06-04 09:49:59] 2025-06-04 13:49:43,541 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:49:59] 2025-06-04 13:49:43,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:49:59] 2025-06-04 13:49:43,550 | INFO     | did not find any defunct processes belonging to 57532
[2025-06-04 09:49:59] 2025-06-04 13:49:43,558 | INFO     | did not find any defunct processes belonging to 57532
[2025-06-04 09:49:59] 2025-06-04 13:49:43,558 | INFO     | ready for new job
[2025-06-04 09:49:59] 2025-06-04 13:49:43,558 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:49:59] 2025-06-04 13:49:43,559 | INFO     | **************************************
[2025-06-04 09:49:59] 2025-06-04 13:49:43,559 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:49:59] 2025-06-04 13:49:43,560 | INFO     | **************************************
[2025-06-04 09:49:59] 2025-06-04 13:49:43,560 | INFO     | 
[2025-06-04 09:49:59] 2025-06-04 13:49:43,564 | INFO     | architecture information:
[2025-06-04 09:49:59] 2025-06-04 13:49:43,564 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:49:59] 2025-06-04 13:49:43,712 | INFO     | cat /etc/os-release:
[2025-06-04 09:49:59] NAME="CentOS Linux"
[2025-06-04 09:49:59] VERSION="7 (Core)"
[2025-06-04 09:49:59] ID="centos"
[2025-06-04 09:49:59] ID_LIKE="rhel fedora"
[2025-06-04 09:49:59] VERSION_ID="7"
[2025-06-04 09:49:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:49:59] ANSI_COLOR="0;31"
[2025-06-04 09:49:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:49:59] HOME_URL="https://www.centos.org/"
[2025-06-04 09:49:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:49:59] 
[2025-06-04 09:49:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:49:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:49:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:49:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:49:59] 
[2025-06-04 09:49:59] 2025-06-04 13:49:43,712 | INFO     | **************************************
[2025-06-04 09:49:59] 2025-06-04 13:49:44,216 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 09:49:59] 2025-06-04 13:49:44,339 | INFO     | sufficient remaining disk space (104084799488 B)
[2025-06-04 09:49:59] 2025-06-04 13:49:44,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:49:59] 2025-06-04 13:49:44,339 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:49:59] 2025-06-04 13:49:44,339 | INFO     | update_server=False
[2025-06-04 09:49:59] 2025-06-04 13:49:44,340 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:49:59] 2025-06-04 13:49:44,436 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 09:49:59] 2025-06-04 13:49:44,436 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 09:49:59] 2025-06-04 13:49:44,437 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:59] 2025-06-04 13:49:44,437 | INFO     | will abort loop
[2025-06-04 09:49:59] 2025-06-04 13:49:44,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:49:59] 2025-06-04 13:49:44,800 | INFO     | all data control threads have been joined
[2025-06-04 09:49:59] 2025-06-04 13:49:45,017 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:49:59] 2025-06-04 13:49:45,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:49:59] 2025-06-04 13:49:45,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:49:59] 2025-06-04 13:49:45,345 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,380 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,442 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,469 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,602 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,699 | INFO     | all job control threads have been joined
[2025-06-04 09:49:59] 2025-06-04 13:49:45,747 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:45,768 | INFO     | all payload control threads have been joined
[2025-06-04 09:49:59] 2025-06-04 13:49:45,806 | INFO     | [data] control thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,256 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,344 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,413 | INFO     | [job] validate thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,656 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,704 | INFO     | [job] control thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:46,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:59] 2025-06-04 13:49:46,773 | INFO     | [payload] control thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:47,313 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:49:59] 2025-06-04 13:49:47,776 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:51,319 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:49:59] 2025-06-04 13:49:52,576 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140429029910336)>', '<ExcThread(monitor, started 140428452034304)>']
[2025-06-04 09:49:59] 2025-06-04 13:49:53,057 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:49:59] 2025-06-04 13:49:53,058 | INFO     | [monitor] control thread has ended
[2025-06-04 09:49:59] 2025-06-04 13:49:57,601 | INFO     | all workflow threads have been joined
[2025-06-04 09:49:59] 2025-06-04 13:49:57,602 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:49:59] 2025-06-04 13:49:57,602 | INFO     | traces error code: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:57,602 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:49:59] 2025-06-04 13:49:57,734 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:49:59] 2025-06-04 13:49:57,766 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:49:59] 2025-06-04 13:49:57,811 [wrapper] pilotpid: 50851
[2025-06-04 09:49:59] 2025-06-04 13:49:57,853 [wrapper] Pilot exit status: 0
[2025-06-04 09:49:59] 2025-06-04 13:49:57,890 [wrapper] pandaids: 6678969715
[2025-06-04 09:49:59] 2025-06-04 13:49:57,939 [wrapper] cleanup supervisor_pilot 32696 50852
[2025-06-04 09:49:59] 2025-06-04 13:49:57,952 [wrapper] Test setup, not cleaning
[2025-06-04 09:49:59] 2025-06-04 13:49:57,997 [wrapper] apfmon messages muted
[2025-06-04 09:49:59] 2025-06-04 13:49:58,035 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:49:59] 2025-06-04 13:49:58,077 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:49:59]  *** Error codes and diagnostics ***
[2025-06-04 09:49:59]     "exeErrorCode": 0,
[2025-06-04 09:49:59]     "exeErrorDiag": "",
[2025-06-04 09:49:59]     "pilotErrorCode": 0,
[2025-06-04 09:49:59]     "pilotErrorDiag": "",
[2025-06-04 09:49:59]  *** Listing of results directory ***
[2025-06-04 09:49:59] total 392968
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:32 queuedata.json
[2025-06-04 09:49:59] -rwx------ 1 boincer umatlas     37140 Jun  4 04:32 runpilot2-wrapper.sh
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:49:59] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:38 run_atlas
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:38 job.xml
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas 217217043 Jun  4 08:38 EVNT.45006593._001111.pool.root.1
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:38 start_atlas.sh
[2025-06-04 09:49:59] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:38 shared
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 08:38 input.tar.gz
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:38 boinc_lockfile
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas      2524 Jun  4 08:38 pandaJob.out
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas    986811 Jun  4 08:39 agis_schedconf.cvmfs.json
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas   1598969 Jun  4 08:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:49:59] drwx------ 4 boincer umatlas      4096 Jun  4 08:39 pilot3
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas      6301 Jun  4 09:46 init_data.xml
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas 179936238 Jun  4 09:48 HITS.45006595._055719.pool.root.1
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas       529 Jun  4 09:48 boinc_task_state.xml
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas      1057 Jun  4 09:49 memory_monitor_summary.json
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas    288841 Jun  4 09:49 log.45006595._055719.job.log.tgz.1
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas        95 Jun  4 09:49 pilot_heartbeat.json
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas      7708 Jun  4 09:49 heartbeat.json
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 09:49 boinc_mmap_file
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas        27 Jun  4 09:49 wrapper_checkpoint.txt
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas      4540 Jun  4 09:49 pilotlog.txt
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas    420922 Jun  4 09:49 log.45006595._055719.job.log.1
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas       357 Jun  4 09:49 output.list
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas       620 Jun  4 09:49 runtime_log
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas    727040 Jun  4 09:49 result.tar.gz
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 09:49 runtime_log.err
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas       655 Jun  4 09:49 jm3KDmYjyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDminnKDmbZTFYn.diag
[2025-06-04 09:49:59] -rw-r--r-- 1 boincer umatlas     22332 Jun  4 09:49 stderr.txt
[2025-06-04 09:49:59] HITS file was successfully produced:
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas 179936238 Jun  4 09:48 shared/HITS.pool.root.1
[2025-06-04 09:49:59]  *** Contents of shared directory: ***
[2025-06-04 09:49:59] total 389080
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas 217217043 Jun  4 08:38 ATLAS.root_0
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:38 start_atlas.sh
[2025-06-04 09:49:59] -rw-r--r-- 2 boincer umatlas    508882 Jun  4 08:38 input.tar.gz
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas 179936238 Jun  4 09:48 HITS.pool.root.1
[2025-06-04 09:49:59] -rw------- 1 boincer umatlas    727040 Jun  4 09:49 result.tar.gz
09:50:00 (47075): run_atlas exited; CPU time 28507.057085
09:50:00 (47075): called boinc_finish(0)

</stderr_txt>
]]>

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