Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
08:32:00 (17944): wrapper (7.7.26015): starting
08:32:00 (17944): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:32:00] Arguments: --nthreads 8
[2025-06-04 08:32:00] Threads: 8
[2025-06-04 08:32:00] Checking for CVMFS
[2025-06-04 08:32:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:32:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:32:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:32:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:32:00] 2.11.2.0 2853 35685 94176 146780 1 58 13054298 20275200 1 130560 0 11945168 99.958 6932684 7934 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 08:32:00] CVMFS is ok
[2025-06-04 08:32:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:32:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:32:00] Further information can be found at the LHC@home message board.
[2025-06-04 08:32:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:32:00] Checking for apptainer binary...
[2025-06-04 08:32:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:32:00] Running /usr/bin/apptainer --version
[2025-06-04 08:32:00] apptainer version 1.3.2-1.el7
[2025-06-04 08:32:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:32:02] c-204-7.aglt2.org
[2025-06-04 08:32:02] apptainer works
[2025-06-04 08:32:02] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:32:02] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:32:02] Starting ATLAS job with PandaID=6678924545
[2025-06-04 08:32:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 10:25:45]  *** The last 200 lines of the pilot log: ***
[2025-06-04 10:25:45] 2025-06-04 14:25:21,693 | INFO     | PID=21699 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 10:25:45] 2025-06-04 14:25:22,508 | INFO     | monitor loop #503: job 0:6678924545 is in state 'finished'
[2025-06-04 10:25:45] 2025-06-04 14:25:22,508 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,012 | INFO     | monitor loop #504: job 0:6678924545 is in state 'finished'
[2025-06-04 10:25:45] 2025-06-04 14:25:25,012 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,374 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 10:25:45] 2025-06-04 14:25:25,375 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678924545/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,375 | INFO     | extracted standard info from prmon json
[2025-06-04 10:25:45] 2025-06-04 14:25:25,376 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 10:25:45] 2025-06-04 14:25:25,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 10:25:45] 2025-06-04 14:25:25,376 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 10:25:45] 2025-06-04 14:25:25,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 10:25:45] 2025-06-04 14:25:25,380 | INFO     | fitting pss+swap vs Time
[2025-06-04 10:25:45] 2025-06-04 14:25:25,380 | INFO     | sum of square deviations: 424045160.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,381 | INFO     | sum of deviations: -2600642706.999997
[2025-06-04 10:25:45] 2025-06-04 14:25:25,382 | INFO     | mean x: 1749043727.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,382 | INFO     | mean y: 2540971.036036036
[2025-06-04 10:25:45] 2025-06-04 14:25:25,382 | INFO     | -- intersect: 10729317838.025023
[2025-06-04 10:25:45] 2025-06-04 14:25:25,382 | INFO     | intersect: 10729317838.025023
[2025-06-04 10:25:45] 2025-06-04 14:25:25,382 | INFO     | chi2: 1.663689943031829
[2025-06-04 10:25:45] 2025-06-04 14:25:25,383 | INFO     | sum of square deviations: 369281342.5
[2025-06-04 10:25:45] 2025-06-04 14:25:25,383 | INFO     | sum of deviations: -2029324667.5000005
[2025-06-04 10:25:45] 2025-06-04 14:25:25,383 | INFO     | mean x: 1749043574.5
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | mean y: 2542575.1226415094
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | -- intersect: 9614122857.614777
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | intersect: 9614122857.614777
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | chi2: 1.664879989139429
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | current chi2=1.664879989139429 (change=-0.07153052241400831 %)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,384 | INFO     | right removable region: 105
[2025-06-04 10:25:45] 2025-06-04 14:25:25,385 | INFO     | sum of square deviations: 369281342.5
[2025-06-04 10:25:45] 2025-06-04 14:25:25,385 | INFO     | sum of deviations: -19725595894.499996
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | mean x: 1749043879.5
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | mean y: 2587690.7075471696
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | -- intersect: 93429817279.93475
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | intersect: 93429817279.93475
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | chi2: 0.11791055230696526
[2025-06-04 10:25:45] 2025-06-04 14:25:25,386 | INFO     | current chi2=0.11791055230696526 (change=92.91270871710081 %)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,387 | INFO     | sum of square deviations: 319447850.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,387 | INFO     | sum of deviations: -18767286108.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,387 | INFO     | mean x: 1749044032.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | mean y: 2584630.108910891
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | -- intersect: 102757415392.10625
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | intersect: 102757415392.10625
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | chi2: 0.09989963205396878
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | current chi2=0.09989963205396878 (change=15.275070721496856 %)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,388 | INFO     | left removable region: 20
[2025-06-04 10:25:45] 2025-06-04 14:25:25,389 | INFO     | sum of square deviations: 190403570.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,389 | INFO     | sum of deviations: -12537021706.000002
[2025-06-04 10:25:45] 2025-06-04 14:25:25,389 | INFO     | mean x: 1749044154.0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,389 | INFO     | mean y: 2570143.5411764705
[2025-06-04 10:25:45] 2025-06-04 14:25:25,390 | INFO     | -- intersect: 115167451366.35866
[2025-06-04 10:25:45] 2025-06-04 14:25:25,390 | INFO     | intersect: 115167451366.35866
[2025-06-04 10:25:45] 2025-06-04 14:25:25,390 | INFO     | chi2: 0.08941698992238603
[2025-06-04 10:25:45] 2025-06-04 14:25:25,390 | INFO     | -- intersect: 115167451366.35866
[2025-06-04 10:25:45] 2025-06-04 14:25:25,390 | INFO     | current memory leak: -65.84 B/s (using 85 data points, chi2=0.09)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | ..............................
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | . Timing measurements:
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | . get job = 0 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | . initial setup = 3 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | . payload setup = 11 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,391 | INFO     | . stage-in = 0 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,392 | INFO     | . payload execution = 6743 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,392 | INFO     | . stage-out = 0 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,392 | INFO     | . log creation = 0 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,392 | INFO     | ..............................
[2025-06-04 10:25:45] 2025-06-04 14:25:25,485 | INFO     | 
[2025-06-04 10:25:45] 2025-06-04 14:25:25,485 | INFO     | job summary report
[2025-06-04 10:25:45] 2025-06-04 14:25:25,485 | INFO     | --------------------------------------------------
[2025-06-04 10:25:45] 2025-06-04 14:25:25,485 | INFO     | PanDA job id: 6678924545
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | task id: 45006595
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | errors: (none)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | pilot state: finished 
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | transexitcode: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | exeerrorcode: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | exeerrordiag: 
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | exitcode: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,486 | INFO     | exitmsg: OK
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | cpuconsumptiontime: 50054 s
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | nevents: 400
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | neventsw: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | pid: 29106
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | pgrp: 29106
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | corecount: 8
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | event service: False
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | sizes: {0: 2397115, 1: 2397314, 6: 2397520, 11: 2397548, 6758: 2424498, 6759: 2424497, 6761: 2433622, 6764: 2433678, 6771: 2433848}
[2025-06-04 10:25:45] 2025-06-04 14:25:25,487 | INFO     | --------------------------------------------------
[2025-06-04 10:25:45] 2025-06-04 14:25:25,488 | INFO     | 
[2025-06-04 10:25:45] 2025-06-04 14:25:25,488 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 10:25:45] 2025-06-04 14:25:25,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,518 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 10:25:45] 2025-06-04 14:25:25,518 | INFO     | job 6678924545 has completed (purged errors)
[2025-06-04 10:25:45] 2025-06-04 14:25:25,519 | INFO     | overall cleanup function is called
[2025-06-04 10:25:45] 2025-06-04 14:25:26,523 | INFO     | --- collectZombieJob: --- 10, [29106]
[2025-06-04 10:25:45] 2025-06-04 14:25:26,524 | INFO     | zombie collector waiting for pid 29106
[2025-06-04 10:25:45] 2025-06-04 14:25:26,524 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 10:25:45] 2025-06-04 14:25:26,524 | INFO     | collected zombie processes
[2025-06-04 10:25:45] 2025-06-04 14:25:26,524 | INFO     | will attempt to kill all subprocesses of pid=29106
[2025-06-04 10:25:45] 2025-06-04 14:25:26,613 | INFO     | process IDs to be killed: [29106] (in reverse order)
[2025-06-04 10:25:45] 2025-06-04 14:25:26,671 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 10:25:45] 2025-06-04 14:25:26,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 10:25:45] 2025-06-04 14:25:26,674 | INFO     | did not find any defunct processes belonging to 29106
[2025-06-04 10:25:45] 2025-06-04 14:25:26,677 | INFO     | did not find any defunct processes belonging to 29106
[2025-06-04 10:25:45] 2025-06-04 14:25:26,678 | INFO     | ready for new job
[2025-06-04 10:25:45] 2025-06-04 14:25:26,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 10:25:45] 2025-06-04 14:25:26,680 | INFO     | **************************************
[2025-06-04 10:25:45] 2025-06-04 14:25:26,680 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 10:25:45] 2025-06-04 14:25:26,680 | INFO     | **************************************
[2025-06-04 10:25:45] 2025-06-04 14:25:26,680 | INFO     | 
[2025-06-04 10:25:45] 2025-06-04 14:25:26,681 | INFO     | architecture information:
[2025-06-04 10:25:45] 2025-06-04 14:25:26,681 | INFO     | executing command: cat /etc/os-release
[2025-06-04 10:25:45] 2025-06-04 14:25:26,700 | INFO     | cat /etc/os-release:
[2025-06-04 10:25:45] NAME="CentOS Linux"
[2025-06-04 10:25:45] VERSION="7 (Core)"
[2025-06-04 10:25:45] ID="centos"
[2025-06-04 10:25:45] ID_LIKE="rhel fedora"
[2025-06-04 10:25:45] VERSION_ID="7"
[2025-06-04 10:25:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 10:25:45] ANSI_COLOR="0;31"
[2025-06-04 10:25:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 10:25:45] HOME_URL="https://www.centos.org/"
[2025-06-04 10:25:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 10:25:45] 
[2025-06-04 10:25:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 10:25:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 10:25:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 10:25:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 10:25:45] 
[2025-06-04 10:25:45] 2025-06-04 14:25:26,700 | INFO     | **************************************
[2025-06-04 10:25:45] 2025-06-04 14:25:27,203 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 10:25:45] 2025-06-04 14:25:27,223 | INFO     | sufficient remaining disk space (18634244096 B)
[2025-06-04 10:25:45] 2025-06-04 14:25:27,224 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 10:25:45] 2025-06-04 14:25:27,224 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 10:25:45] 2025-06-04 14:25:27,224 | INFO     | update_server=False
[2025-06-04 10:25:45] 2025-06-04 14:25:27,224 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 10:25:45] 2025-06-04 14:25:27,225 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:25:45] 2025-06-04 14:25:27,225 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 10:25:45] 2025-06-04 14:25:27,370 | INFO     | all data control threads have been joined
[2025-06-04 10:25:45] 2025-06-04 14:25:27,514 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 10:25:45] 2025-06-04 14:25:27,515 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 10:25:45] 2025-06-04 14:25:27,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 10:25:45] 2025-06-04 14:25:27,515 | INFO     | will abort loop
[2025-06-04 10:25:45] 2025-06-04 14:25:27,667 | INFO     | all job control threads have been joined
[2025-06-04 10:25:45] 2025-06-04 14:25:27,710 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 10:25:45] 2025-06-04 14:25:27,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 10:25:45] 2025-06-04 14:25:27,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 10:25:45] 2025-06-04 14:25:27,729 | INFO     | all payload control threads have been joined
[2025-06-04 10:25:45] 2025-06-04 14:25:28,230 | INFO     | [job] retrieve thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,231 | INFO     | [job] queue monitor thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,231 | INFO     | [payload] failed_post thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,338 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,339 | INFO     | [data] copytool_in thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,372 | INFO     | [data] control thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,517 | INFO     | [job] job monitor thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,519 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,673 | INFO     | [job] control thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,735 | INFO     | [payload] control thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:28,987 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:29,017 | INFO     | [payload] validate_post thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:29,226 | INFO     | [data] copytool_out thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:29,520 | INFO     | [job] validate thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:29,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 10:25:45] 2025-06-04 14:25:33,891 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:37,535 | INFO     | job.realtimelogging is not enabled
[2025-06-04 10:25:45] 2025-06-04 14:25:38,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 10:25:45] 2025-06-04 14:25:40,383 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765648103232)>', '<ExcThread(monitor, started 139765429606144)>']
[2025-06-04 10:25:45] 2025-06-04 14:25:40,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 10:25:45] 2025-06-04 14:25:40,775 | INFO     | [monitor] control thread has ended
[2025-06-04 10:25:45] 2025-06-04 14:25:45,399 | INFO     | all workflow threads have been joined
[2025-06-04 10:25:45] 2025-06-04 14:25:45,399 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 10:25:45] 2025-06-04 14:25:45,400 | INFO     | traces error code: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:45,400 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 10:25:45] 2025-06-04 14:25:45,506 [wrapper] ==== pilot stdout END ====
[2025-06-04 10:25:45] 2025-06-04 14:25:45,511 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 10:25:45] 2025-06-04 14:25:45,515 [wrapper] pilotpid: 21699
[2025-06-04 10:25:45] 2025-06-04 14:25:45,520 [wrapper] Pilot exit status: 0
[2025-06-04 10:25:45] 2025-06-04 14:25:45,538 [wrapper] pandaids: 6678924545
[2025-06-04 10:25:45] 2025-06-04 14:25:45,584 [wrapper] cleanup supervisor_pilot 10298 21700
[2025-06-04 10:25:45] 2025-06-04 14:25:45,589 [wrapper] Test setup, not cleaning
[2025-06-04 10:25:45] 2025-06-04 14:25:45,594 [wrapper] apfmon messages muted
[2025-06-04 10:25:45] 2025-06-04 14:25:45,599 [wrapper] ==== wrapper stdout END ====
[2025-06-04 10:25:45] 2025-06-04 14:25:45,603 [wrapper] ==== wrapper stderr END ====
[2025-06-04 10:25:45]  *** Error codes and diagnostics ***
[2025-06-04 10:25:45]     "exeErrorCode": 0,
[2025-06-04 10:25:45]     "exeErrorDiag": "",
[2025-06-04 10:25:45]     "pilotErrorCode": 0,
[2025-06-04 10:25:45]     "pilotErrorDiag": "",
[2025-06-04 10:25:45]  *** Listing of results directory ***
[2025-06-04 10:25:45] total 395272
[2025-06-04 10:25:45] -rwx------ 1 boincer umatlas     37140 Jun  4 04:31 runpilot2-wrapper.sh
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:32 queuedata.json
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas       100 Jun  4 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 10:25:45] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 08:31 run_atlas
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas       105 Jun  4 08:31 job.xml
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas 218033561 Jun  4 08:32 EVNT.45006593._000380.pool.root.1
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:32 start_atlas.sh
[2025-06-04 10:25:45] drwxrwx--x 2 boincer umatlas      4096 Jun  4 08:32 shared
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 08:32 input.tar.gz
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas         0 Jun  4 08:32 boinc_lockfile
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas      2522 Jun  4 08:32 pandaJob.out
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas    986811 Jun  4 08:32 agis_schedconf.cvmfs.json
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas   1598969 Jun  4 08:32 agis_ddmendpoints.agis.ALL.json
[2025-06-04 10:25:45] drwx------ 4 boincer umatlas      4096 Jun  4 08:32 pilot3
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas      5824 Jun  4 10:20 init_data.xml
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas 181017696 Jun  4 10:24 HITS.45006595._055687.pool.root.1
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas       530 Jun  4 10:24 boinc_task_state.xml
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas        95 Jun  4 10:24 pilot_heartbeat.json
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas      1048 Jun  4 10:25 memory_monitor_summary.json
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas    315314 Jun  4 10:25 log.45006595._055687.job.log.tgz.1
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 10:25 boinc_mmap_file
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas        27 Jun  4 10:25 wrapper_checkpoint.txt
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas      7741 Jun  4 10:25 heartbeat.json
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas      4611 Jun  4 10:25 pilotlog.txt
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas    623598 Jun  4 10:25 log.45006595._055687.job.log.1
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas       357 Jun  4 10:25 output.list
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas       620 Jun  4 10:25 runtime_log
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas    962560 Jun  4 10:25 result.tar.gz
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas      8654 Jun  4 10:25 runtime_log.err
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas       657 Jun  4 10:25 8AdNDmZiyg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBnnKDmlBQnBo.diag
[2025-06-04 10:25:45] -rw-r--r-- 1 boincer umatlas     21119 Jun  4 10:25 stderr.txt
[2025-06-04 10:25:45] HITS file was successfully produced:
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas 181017696 Jun  4 10:24 shared/HITS.pool.root.1
[2025-06-04 10:25:45]  *** Contents of shared directory: ***
[2025-06-04 10:25:45] total 391160
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas 218033561 Jun  4 08:32 ATLAS.root_0
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 08:32 start_atlas.sh
[2025-06-04 10:25:45] -rw-r--r-- 2 boincer umatlas    508878 Jun  4 08:32 input.tar.gz
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas 181017696 Jun  4 10:24 HITS.pool.root.1
[2025-06-04 10:25:45] -rw------- 1 boincer umatlas    962560 Jun  4 10:25 result.tar.gz
10:25:47 (17944): run_atlas exited; CPU time 49979.581520
10:25:47 (17944): called boinc_finish(0)

</stderr_txt>
]]>

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