Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:03:15 (482754): wrapper (7.7.26015): starting
05:03:15 (482754): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 05:03:15] Arguments: --nthreads 12
[2025-06-05 05:03:15] Threads: 12
[2025-06-05 05:03:15] Checking for CVMFS
[2025-06-05 05:03:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 05:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 05:03:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 05:03:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 05:03:17] 2.12.7.0 3695 464 50556 146806 2 187 3135101 4096001 2736 130560 0 1330525 99.997 151944 217 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 05:03:17] CVMFS is ok
[2025-06-05 05:03:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 05:03:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 05:03:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 05:03:17] Further information can be found at the LHC@home message board.
[2025-06-05 05:03:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 05:03:17] Checking for apptainer binary...
[2025-06-05 05:03:17] apptainer is not installed, using version from CVMFS
[2025-06-05 05:03:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 05:03:17] dualxeon2
[2025-06-05 05:03:17] apptainer works
[2025-06-05 05:03:17] Set ATHENA_PROC_NUMBER=12
[2025-06-05 05:03:17] Set ATHENA_CORE_NUMBER=12
[2025-06-05 05:03:17] Starting ATLAS job with PandaID=6678363781
[2025-06-05 05:03:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:37:09]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:37:09]  scope=mc23_13p6TeV
[2025-06-05 06:37:09]  status=None
[2025-06-05 06:37:09]  status_code=0
[2025-06-05 06:37:09]  storage_token=
[2025-06-05 06:37:09]  surl=/opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363781/log.45006595._053656.job.log.tgz.1
[2025-06-05 06:37:09]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/68/log.45006595._053656.job.log.tgz.1
[2025-06-05 06:37:09]  workdir=None
[2025-06-05 06:37:09] ]
[2025-06-05 06:37:09] 2025-06-05 06:36:37,160 | INFO     | transferring file log.45006595._053656.job.log.tgz.1 from /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363781/log.45006595._053656.job.log.tgz.1 t
[2025-06-05 06:37:09] 2025-06-05 06:36:37,160 | INFO     | executing command: /usr/bin/env mv /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363781/log.45006595._053656.job.log.tgz.1 /opt/boinc/instance_home
[2025-06-05 06:37:09] 2025-06-05 06:36:37,193 | INFO     | adding to output.list: log.45006595._053656.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/68/log.45006595._053656.job.log.tg
[2025-06-05 06:37:09] 2025-06-05 06:36:37,194 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 06:37:09] 2025-06-05 06:36:37,194 | INFO     | summary of transferred files:
[2025-06-05 06:37:09] 2025-06-05 06:36:37,194 | INFO     |  -- lfn=log.45006595._053656.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 06:37:09] 2025-06-05 06:36:37,194 | INFO     | stage-out finished correctly
[2025-06-05 06:37:09] 2025-06-05 06:36:38,410 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 06:37:09] 2025-06-05 06:36:38,471 | INFO     | monitor loop #412: job 0:6678363781 is in state 'finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:38,485 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:37:09] 2025-06-05 06:36:39,913 | INFO     | job 6678363781 has state=finished
[2025-06-05 06:37:09] 2025-06-05 06:36:39,914 | INFO     | preparing for final server update for job 6678363781 in state='finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:39,915 | INFO     | this job has now completed (state=finished)
[2025-06-05 06:37:09] 2025-06-05 06:36:39,915 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 06:37:09] 2025-06-05 06:36:39,915 | INFO     | log transfer has been attempted: DONE
[2025-06-05 06:37:09] 2025-06-05 06:36:39,915 | INFO     | job 6678363781 has finished - writing final server update
[2025-06-05 06:37:09] 2025-06-05 06:36:39,916 | INFO     | total number of processed events: 400 (read)
[2025-06-05 06:37:09] 2025-06-05 06:36:39,923 | INFO     | executing command: lscpu
[2025-06-05 06:37:09] 2025-06-05 06:36:40,010 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 06:37:09] 2025-06-05 06:36:40,715 | INFO     | PID=486498 has CPU usage=9.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-05 06:37:09] 2025-06-05 06:36:40,716 | INFO     | .. there are 4 such processes running
[2025-06-05 06:37:09] 2025-06-05 06:36:40,999 | INFO     | monitor loop #413: job 0:6678363781 is in state 'finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:40,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:37:09] 2025-06-05 06:36:43,503 | INFO     | monitor loop #414: job 0:6678363781 is in state 'finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:43,503 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:37:09] 2025-06-05 06:36:46,006 | INFO     | monitor loop #415: job 0:6678363781 is in state 'finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:46,006 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,509 | INFO     | monitor loop #416: job 0:6678363781 is in state 'finished'
[2025-06-05 06:37:09] 2025-06-05 06:36:48,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,722 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 06:37:09] 2025-06-05 06:36:48,722 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363781/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,723 | INFO     | extracted standard info from prmon json
[2025-06-05 06:37:09] 2025-06-05 06:36:48,723 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:37:09] 2025-06-05 06:36:48,723 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:37:09] 2025-06-05 06:36:48,724 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:37:09] 2025-06-05 06:36:48,724 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:37:09] 2025-06-05 06:36:48,730 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:37:09] 2025-06-05 06:36:48,730 | INFO     | sum of square deviations: 183761585.0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,731 | INFO     | sum of deviations: 4667549322.0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,731 | INFO     | mean x: 1749102697.5
[2025-06-05 06:37:09] 2025-06-05 06:36:48,731 | INFO     | mean y: 2633353.595238095
[2025-06-05 06:37:09] 2025-06-05 06:36:48,731 | INFO     | -- intersect: -44424623354.189995
[2025-06-05 06:37:09] 2025-06-05 06:36:48,731 | INFO     | intersect: -44424623354.189995
[2025-06-05 06:37:09] 2025-06-05 06:36:48,736 | INFO     | chi2: 0.06898519922028518
[2025-06-05 06:37:09] 2025-06-05 06:36:48,736 | INFO     | -- intersect: -44424623354.189995
[2025-06-05 06:37:09] 2025-06-05 06:36:48,736 | INFO     | current memory leak: 25.40 B/s (using 84 data points, chi2=0.07)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | ..............................
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . Timing measurements:
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . get job = 0 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . initial setup = 2 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . payload setup = 14 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . stage-in = 0 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . payload execution = 5539 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . stage-out = 1 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,737 | INFO     | . log creation = 0 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,738 | INFO     | ..............................
[2025-06-05 06:37:09] 2025-06-05 06:36:48,960 | INFO     | 
[2025-06-05 06:37:09] 2025-06-05 06:36:48,960 | INFO     | job summary report
[2025-06-05 06:37:09] 2025-06-05 06:36:48,960 | INFO     | --------------------------------------------------
[2025-06-05 06:37:09] 2025-06-05 06:36:48,960 | INFO     | PanDA job id: 6678363781
[2025-06-05 06:37:09] 2025-06-05 06:36:48,960 | INFO     | task id: 45006595
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | errors: (none)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | pilot state: finished 
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | transexitcode: 0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | exeerrorcode: 0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | exeerrordiag: 
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | exitcode: 0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,961 | INFO     | exitmsg: OK
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | cpuconsumptiontime: 45117 s
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | nevents: 400
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | neventsw: 0
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | pid: 493199
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | pgrp: 493199
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | corecount: 12
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | event service: False
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | sizes: {0: 2397193, 1: 2397392, 10: 2397598, 12: 2397626, 5557: 2424140, 5559: 2433127, 5561: 2433311, 5571: 2433481}
[2025-06-05 06:37:09] 2025-06-05 06:36:48,962 | INFO     | --------------------------------------------------
[2025-06-05 06:37:09] 2025-06-05 06:36:48,963 | INFO     | 
[2025-06-05 06:37:09] 2025-06-05 06:36:48,963 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,995 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,996 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:37:09] 2025-06-05 06:36:48,997 | INFO     | job 6678363781 has completed (purged errors)
[2025-06-05 06:37:09] 2025-06-05 06:36:49,004 | INFO     | overall cleanup function is called
[2025-06-05 06:37:09] 2025-06-05 06:36:50,015 | INFO     | --- collectZombieJob: --- 10, [493199]
[2025-06-05 06:37:09] 2025-06-05 06:36:50,015 | INFO     | zombie collector waiting for pid 493199
[2025-06-05 06:37:09] 2025-06-05 06:36:50,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:37:09] 2025-06-05 06:36:50,015 | INFO     | collected zombie processes
[2025-06-05 06:37:09] 2025-06-05 06:36:50,015 | INFO     | will attempt to kill all subprocesses of pid=493199
[2025-06-05 06:37:09] 2025-06-05 06:36:50,287 | INFO     | process IDs to be killed: [493199] (in reverse order)
[2025-06-05 06:37:09] 2025-06-05 06:36:50,385 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:37:09] 2025-06-05 06:36:50,386 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:37:09] 2025-06-05 06:36:50,395 | INFO     | did not find any defunct processes belonging to 493199
[2025-06-05 06:37:09] 2025-06-05 06:36:50,402 | INFO     | did not find any defunct processes belonging to 493199
[2025-06-05 06:37:09] 2025-06-05 06:36:50,402 | INFO     | ready for new job
[2025-06-05 06:37:09] 2025-06-05 06:36:50,403 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:37:09] 2025-06-05 06:36:50,408 | INFO     | **************************************
[2025-06-05 06:37:09] 2025-06-05 06:36:50,408 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:37:09] 2025-06-05 06:36:50,408 | INFO     | **************************************
[2025-06-05 06:37:09] 2025-06-05 06:36:50,408 | INFO     | 
[2025-06-05 06:37:09] 2025-06-05 06:36:50,410 | INFO     | architecture information:
[2025-06-05 06:37:09] 2025-06-05 06:36:50,414 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:37:09] 2025-06-05 06:36:50,439 | INFO     | cat /etc/os-release:
[2025-06-05 06:37:09] NAME="CentOS Linux"
[2025-06-05 06:37:09] VERSION="7 (Core)"
[2025-06-05 06:37:09] ID="centos"
[2025-06-05 06:37:09] ID_LIKE="rhel fedora"
[2025-06-05 06:37:09] VERSION_ID="7"
[2025-06-05 06:37:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:37:09] ANSI_COLOR="0;31"
[2025-06-05 06:37:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:37:09] HOME_URL="https://www.centos.org/"
[2025-06-05 06:37:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:37:09] 
[2025-06-05 06:37:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:37:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:37:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:37:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:37:09] 
[2025-06-05 06:37:09] 2025-06-05 06:36:50,439 | INFO     | **************************************
[2025-06-05 06:37:09] 2025-06-05 06:36:50,945 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 06:37:09] 2025-06-05 06:36:50,970 | INFO     | sufficient remaining disk space (83281051648 B)
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | INFO     | update_server=False
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:37:09] 2025-06-05 06:36:50,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:37:09] 2025-06-05 06:36:50,972 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 06:37:09] 2025-06-05 06:36:50,972 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:37:09] 2025-06-05 06:36:50,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:37:09] 2025-06-05 06:36:50,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:37:09] 2025-06-05 06:36:51,012 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 06:37:09] 2025-06-05 06:36:51,012 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 06:37:09] 2025-06-05 06:36:51,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:37:09] 2025-06-05 06:36:51,012 | INFO     | will abort loop
[2025-06-05 06:37:09] 2025-06-05 06:36:51,334 | INFO     | all payload control threads have been joined
[2025-06-05 06:37:09] 2025-06-05 06:36:51,429 | INFO     | all data control threads have been joined
[2025-06-05 06:37:09] 2025-06-05 06:36:51,977 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:51,977 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,018 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,052 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,177 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,339 | INFO     | [payload] control thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,367 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,434 | INFO     | [data] control thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,549 | INFO     | all job control threads have been joined
[2025-06-05 06:37:09] 2025-06-05 06:36:52,588 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,663 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,916 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,947 | INFO     | [job] validate thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:52,977 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:53,554 | INFO     | [job] control thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:36:53,626 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:37:09] 2025-06-05 06:36:57,634 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:37:01,988 | INFO     | job.realtimelogging is not enabled
[2025-06-05 06:37:09] 2025-06-05 06:37:02,993 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:37:09] 2025-06-05 06:37:04,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135224966313792)>', '<ExcThread(monitor, started 135224469997312)>']
[2025-06-05 06:37:09] 2025-06-05 06:37:05,047 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:37:09] 2025-06-05 06:37:05,047 | INFO     | [monitor] control thread has ended
[2025-06-05 06:37:09] 2025-06-05 06:37:09,220 | INFO     | all workflow threads have been joined
[2025-06-05 06:37:09] 2025-06-05 06:37:09,220 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:37:09] 2025-06-05 06:37:09,220 | INFO     | traces error code: 0
[2025-06-05 06:37:09] 2025-06-05 06:37:09,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:37:09] 2025-06-05 06:37:09,413 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:37:09] 2025-06-05 06:37:09,418 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:37:09] 2025-06-05 06:37:09,423 [wrapper] pilotpid: 486498
[2025-06-05 06:37:09] 2025-06-05 06:37:09,429 [wrapper] Pilot exit status: 0
[2025-06-05 06:37:09] 2025-06-05 06:37:09,449 [wrapper] pandaids: 6678363781
[2025-06-05 06:37:09] 2025-06-05 06:37:09,519 [wrapper] cleanup supervisor_pilot  576044 486499
[2025-06-05 06:37:09] 2025-06-05 06:37:09,527 [wrapper] Test setup, not cleaning
[2025-06-05 06:37:09] 2025-06-05 06:37:09,534 [wrapper] apfmon messages muted
[2025-06-05 06:37:09] 2025-06-05 06:37:09,540 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:37:09] 2025-06-05 06:37:09,546 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:37:09]  *** Error codes and diagnostics ***
[2025-06-05 06:37:09]     "exeErrorCode": 0,
[2025-06-05 06:37:09]     "exeErrorDiag": "",
[2025-06-05 06:37:09]     "pilotErrorCode": 0,
[2025-06-05 06:37:09]     "pilotErrorDiag": "",
[2025-06-05 06:37:09]  *** Listing of results directory ***
[2025-06-05 06:37:09] total 389264
[2025-06-05 06:37:09] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-05 06:37:09] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:46 queuedata.json
[2025-06-05 06:37:09] -rwx------ 1 boinc boinc     37140 Jun  4 05:47 runpilot2-wrapper.sh
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc       100 Jun  5 05:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:37:09] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 05:03 run_atlas
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc       105 Jun  5 05:03 job.xml
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc      6597 Jun  5 05:03 init_data.xml
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc 218110125 Jun  5 05:03 EVNT.45006593._002147.pool.root.1
[2025-06-05 06:37:09] drwxrwx--x 2 boinc boinc      4096 Jun  5 05:03 shared
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc    508883 Jun  5 05:03 input.tar.gz
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc     15093 Jun  5 05:03 start_atlas.sh
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc         0 Jun  5 05:03 boinc_lockfile
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc      2524 Jun  5 05:03 pandaJob.out
[2025-06-05 06:37:09] -rw------- 1 boinc boinc    987109 Jun  5 05:03 agis_schedconf.cvmfs.json
[2025-06-05 06:37:09] -rw------- 1 boinc boinc   1598969 Jun  5 05:03 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:37:09] drwx------ 4 boinc boinc      4096 Jun  5 05:03 pilot3
[2025-06-05 06:37:09] -rw------- 1 boinc boinc 174779795 Jun  5 06:35 HITS.45006595._053656.pool.root.1
[2025-06-05 06:37:09] -rw------- 1 boinc boinc        95 Jun  5 06:36 pilot_heartbeat.json
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc       530 Jun  5 06:36 boinc_task_state.xml
[2025-06-05 06:37:09] -rw------- 1 boinc boinc      1023 Jun  5 06:36 memory_monitor_summary.json
[2025-06-05 06:37:09] -rw------- 1 boinc boinc    383757 Jun  5 06:36 log.45006595._053656.job.log.tgz.1
[2025-06-05 06:37:09] -rw------- 1 boinc boinc      7674 Jun  5 06:36 heartbeat.json
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 06:36 boinc_mmap_file
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc        27 Jun  5 06:36 wrapper_checkpoint.txt
[2025-06-05 06:37:09] -rw------- 1 boinc boinc      4757 Jun  5 06:37 pilotlog.txt
[2025-06-05 06:37:09] -rw------- 1 boinc boinc    557281 Jun  5 06:37 log.45006595._053656.job.log.1
[2025-06-05 06:37:09] -rw------- 1 boinc boinc       357 Jun  5 06:37 output.list
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc       620 Jun  5 06:37 runtime_log
[2025-06-05 06:37:09] -rw------- 1 boinc boinc    962560 Jun  5 06:37 result.tar.gz
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc      8968 Jun  5 06:37 runtime_log.err
[2025-06-05 06:37:09] -rw------- 1 boinc boinc       653 Jun  5 06:37 3umNDmh9vg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWQnKDmlOXBSn.diag
[2025-06-05 06:37:09] -rw-rw-r-- 1 boinc boinc     22138 Jun  5 06:37 stderr.txt
[2025-06-05 06:37:09] HITS file was successfully produced:
[2025-06-05 06:37:09] -rw------- 1 boinc boinc 174779795 Jun  5 06:35 shared/HITS.pool.root.1
[2025-06-05 06:37:09]  *** Contents of shared directory: ***
[2025-06-05 06:37:09] total 385148
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc 218110125 Jun  5 05:03 ATLAS.root_0
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc    508883 Jun  5 05:03 input.tar.gz
[2025-06-05 06:37:09] -rw-r--r-- 2 boinc boinc     15093 Jun  5 05:03 start_atlas.sh
[2025-06-05 06:37:09] -rw------- 1 boinc boinc 174779795 Jun  5 06:35 HITS.pool.root.1
[2025-06-05 06:37:09] -rw------- 1 boinc boinc    962560 Jun  5 06:37 result.tar.gz
06:37:11 (482754): run_atlas exited; CPU time 45177.773452
06:37:11 (482754): called boinc_finish(0)

</stderr_txt>
]]>

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