Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 12:37:31 (7568): Detected: vboxwrapper 26206
2025-06-04 12:37:31 (7568): Detected: BOINC client v8.0.2
2025-06-04 12:37:34 (7568): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-06-04 12:37:34 (7568): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 12:37:35 (7568): Create VM. (boinc_552de1cbd624e086, slot#2)
2025-06-04 12:37:36 (7568): Setting Memory Size for VM. (4400MB)
2025-06-04 12:37:36 (7568): Setting CPU Count for VM. (4)
2025-06-04 12:37:37 (7568): Setting Chipset Options for VM.
2025-06-04 12:37:37 (7568): Setting Graphics Controller Options for VM.
2025-06-04 12:37:38 (7568): Setting Boot Options for VM.
2025-06-04 12:37:38 (7568): Setting Network Configuration for NAT.
2025-06-04 12:37:39 (7568): Enabling VM Network Access.
2025-06-04 12:37:39 (7568): Disabling USB Support for VM.
2025-06-04 12:37:40 (7568): Disabling COM Port Support for VM.
2025-06-04 12:37:40 (7568): Disabling LPT Port Support for VM.
2025-06-04 12:37:40 (7568): Disabling Audio Support for VM.
2025-06-04 12:37:41 (7568): Disabling Clipboard Support for VM.
2025-06-04 12:37:41 (7568): Disabling Drag and Drop Support for VM.
2025-06-04 12:37:42 (7568): Adding storage controller(s) to VM.
2025-06-04 12:37:42 (7568): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 12:37:44 (7568): Adding VirtualBox Guest Additions to VM.
2025-06-04 12:37:44 (7568): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 12:37:45 (7568): forwarding host port 53060 to guest port 80
2025-06-04 12:37:45 (7568): Enabling remote desktop for VM.
2025-06-04 12:37:45 (7568): Required extension pack not installed, remote desktop not enabled.
2025-06-04 12:37:45 (7568): Enabling shared directory for VM.
2025-06-04 12:37:46 (7568): Starting VM using VBoxManage interface. (boinc_552de1cbd624e086, slot#2)
2025-06-04 12:37:57 (7568): Successfully started VM. (PID = '2696')
2025-06-04 12:37:57 (7568): Reporting VM Process ID to BOINC.
2025-06-04 12:37:57 (7568): Guest Log: BIOS: VirtualBox 6.1.12
2025-06-04 12:37:57 (7568): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 12:37:57 (7568): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 12:37:57 (7568): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 12:37:57 (7568): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 12:37:57 (7568): Detected: Web Application Enabled (http://localhost:53060)
2025-06-04 12:37:57 (7568): Preference change detected
2025-06-04 12:37:57 (7568): Setting CPU throttle for VM. (100%)
2025-06-04 12:37:57 (7568): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 12:37:59 (7568): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 12:37:59 (7568): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 12:38:03 (7568): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 12:38:03 (7568): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 12:38:03 (7568): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 12:38:22 (7568): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 12:38:22 (7568): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 12:39:07 (7568): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.000189 main     Log opened 2025-06-04T12:39:05.807991000Z
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.001716 main     OS Product: Linux
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.002481 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.002983 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.003675 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.003684 main     Process ID: 1309
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.003687 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 12:39:07 (7568): Guest Log: 00:00:00.005504 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 12:39:08 (7568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 12:39:08 (7568): Guest Log: [INFO] Mounting shared directory
2025-06-04 12:39:09 (7568): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 12:39:16 (7568): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 12:39:16 (7568): Guest Log: [INFO] Detected branch: prod
2025-06-04 12:39:16 (7568): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 12:39:16 (7568): Guest Log: Copying input files
2025-06-04 12:39:17 (7568): Guest Log: 00:00:10.010786 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 360 719 000ns (GuestNow=1 749 055 157 178 539 000 ns GuestLast=1 749 040 745 817 820 000 ns fSetTimeLastLoop=true )
2025-06-04 12:39:23 (7568): Guest Log: Copied input files into RunAtlas.
2025-06-04 12:39:24 (7568): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 12:39:24 (7568): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 12:39:24 (7568): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 12:39:24 (7568): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 12:39:34 (7568): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 12:39:35 (7568): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 12:39:35 (7568): Guest Log: 2.6.3.0 1589 0 30172 146788 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 12:39:40 (7568): Guest Log: copied the webapp to /var/www
2025-06-04 12:39:41 (7568): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-04 12:39:41 (7568): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-04 12:39:42 (7568): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 12:39:42 (7568): Guest Log:  *** Starting ATLAS job. (PandaID=6678392216 taskID=45006595) ***
2025-06-04 14:23:20 (7568): Status Report: Elapsed Time: '6000.643919'
2025-06-04 14:23:20 (7568): Status Report: CPU Time: '21020.890625'
2025-06-04 16:08:41 (7568): Status Report: Elapsed Time: '12000.748014'
2025-06-04 16:08:41 (7568): Status Report: CPU Time: '46076.109375'
2025-06-04 16:44:37 (7568): Guest Log:  *** Job finished ***
2025-06-04 16:44:37 (7568): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:21,453 | INFO     | [job] control thread has finished
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:22,064 | INFO     | [job] queue monitor thread has finished
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:24,408 | INFO     | [data] queue_monitor thread has finished
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:26,276 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139887010035520)>', '<ExcThread(monitor, started 139886715713280)>']
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:26,485 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:26,490 | INFO     | [monitor] control thread has ended
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,299 | INFO     | all workflow threads have been joined
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,299 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,300 | INFO     | traces error code: 0
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,300 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,897 [wrapper] ==== pilot stdout END ====
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,905 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,913 [wrapper] pilotpid: 5919
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:31,951 [wrapper] Pilot exit status: 0
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,151 [wrapper] pandaids: 6678392216
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,261 [wrapper] cleanup supervisor_pilot 16666 5920
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,269 [wrapper] Test setup, not cleaning
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,326 [wrapper] apfmon messages muted
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,396 [wrapper] ==== wrapper stdout END ====
2025-06-04 16:44:37 (7568): Guest Log: 2025-06-04 20:44:32,429 [wrapper] ==== wrapper stderr END ====
2025-06-04 16:44:37 (7568): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 16:44:37 (7568): Guest Log:     "exeErrorCode": 0,
2025-06-04 16:44:37 (7568): Guest Log:     "exeErrorDiag": "",
2025-06-04 16:44:37 (7568): Guest Log:     "pilotErrorCode": 0,
2025-06-04 16:44:37 (7568): Guest Log:     "pilotErrorDiag": "",
2025-06-04 16:44:37 (7568): Guest Log:  *** Listing of results directory ***
2025-06-04 16:44:37 (7568): Guest Log: total 185608
2025-06-04 16:44:37 (7568): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 07:34 pilot3.tar.gz
2025-06-04 16:44:37 (7568): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 07:40 queuedata.json
2025-06-04 16:44:37 (7568): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 07:41 runpilot2-wrapper.sh
2025-06-04 16:44:37 (7568): Guest Log: -rwxr-xr-x. 1 atlas atlas      8406 Jun  4 16:39 init_data.xml
2025-06-04 16:44:37 (7568): Guest Log: -rwxr-xr-x. 1 atlas atlas    508883 Jun  4 16:39 input.tar.gz
2025-06-04 16:44:37 (7568): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 16:39 start_atlas.sh
2025-06-04 16:44:37 (7568): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 16:39 EVNT.45006593._002210.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 16:44:37 (7568): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 16:39 pandaJob.out
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas    990984 Jun  4 16:41 agis_schedconf.cvmfs.json
2025-06-04 16:44:37 (7568): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 16:41 pilot3
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas 183226083 Jun  4 20:42 HITS.45006595._055245.pool.root.1
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  4 20:43 memory_monitor_summary.json
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 20:43 agis_ddmendpoints.agis.ALL.json
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas    334285 Jun  4 20:43 log.45006595._055245.job.log.tgz.1
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas      7725 Jun  4 20:44 heartbeat.json
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 20:44 pilot_heartbeat.json
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas      4599 Jun  4 20:44 pilotlog.txt
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas   1199439 Jun  4 20:44 log.45006595._055245.job.log.1
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 20:44 output.list
2025-06-04 16:44:37 (7568): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 20:44 runtime_log
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas   1556480 Jun  4 20:44 result.tar.gz
2025-06-04 16:44:37 (7568): Guest Log: -rw-r--r--. 1 atlas atlas      8620 Jun  4 20:44 runtime_log.err
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas       666 Jun  4 20:44 ktCNDmMvxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNhnKDmzU3lSo.diag
2025-06-04 16:44:37 (7568): Guest Log: Looking for outputfile HITS.45006595._055245.pool.root.1
2025-06-04 16:44:37 (7568): Guest Log: HITS file was successfully produced
2025-06-04 16:44:37 (7568): Guest Log: -rw-------. 1 atlas atlas 183226083 Jun  4 20:42 /home/atlas/RunAtlas/HITS.45006595._055245.pool.root.1
2025-06-04 16:44:43 (7568): Guest Log: Successfully finished the ATLAS job!
2025-06-04 16:44:43 (7568): Guest Log: Copying the results back to the shared directory!
2025-06-04 16:44:43 (7568): Guest Log:  *** Contents of shared directory: ***
2025-06-04 16:44:43 (7568): Guest Log: total 391192
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root 215256206 Jun  4 16:37 ATLAS.root_0
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root 183226083 Jun  4 20:44 HITS.pool.root.1
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root      8406 Jun  4 16:37 init_data.xml
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root    508883 Jun  4 12:41 input.tar.gz
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root   1556480 Jun  4 20:44 result.tar.gz
2025-06-04 16:44:43 (7568): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 12:41 start_atlas.sh
2025-06-04 16:44:43 (7568): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 16:44:43 (7568): VM Completion File Detected.
2025-06-04 16:44:43 (7568): Powering off VM.
2025-06-04 16:44:46 (7568): Successfully stopped VM.
2025-06-04 16:44:46 (7568): Deregistering VM. (boinc_552de1cbd624e086, slot#2)
2025-06-04 16:44:46 (7568): Removing network bandwidth throttle group from VM.
2025-06-04 16:44:46 (7568): Removing VM from VirtualBox.
16:44:52 (7568): called boinc_finish(0)

</stderr_txt>
]]>

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