Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 22:38:07 (1965384): Detected: vboxwrapper 26206
2025-06-04 22:38:07 (1965384): Detected: BOINC client v8.0.2
2025-06-04 22:38:07 (1965384): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2025-06-04 22:38:07 (1965384): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 22:38:07 (1965384): Create VM. (boinc_a919a3434c37a952, slot#1)
2025-06-04 22:38:07 (1965384): Setting Memory Size for VM. (4300MB)
2025-06-04 22:38:07 (1965384): Setting CPU Count for VM. (3)
2025-06-04 22:38:07 (1965384): Setting Chipset Options for VM.
2025-06-04 22:38:07 (1965384): Setting Graphics Controller Options for VM.
2025-06-04 22:38:08 (1965384): Setting Boot Options for VM.
2025-06-04 22:38:08 (1965384): Setting Network Configuration for NAT.
2025-06-04 22:38:08 (1965384): Enabling VM Network Access.
2025-06-04 22:38:08 (1965384): Disabling USB Support for VM.
2025-06-04 22:38:08 (1965384): Disabling COM Port Support for VM.
2025-06-04 22:38:08 (1965384): Disabling LPT Port Support for VM.
2025-06-04 22:38:08 (1965384): Disabling Audio Support for VM.
2025-06-04 22:38:08 (1965384): Disabling Clipboard Support for VM.
2025-06-04 22:38:08 (1965384): Disabling Drag and Drop Support for VM.
2025-06-04 22:38:08 (1965384): Adding storage controller(s) to VM.
2025-06-04 22:38:08 (1965384): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 22:38:09 (1965384): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 22:38:09 (1965384): forwarding host port 47373 to guest port 80
2025-06-04 22:38:09 (1965384): Enabling remote desktop for VM.
2025-06-04 22:38:10 (1965384): Enabling shared directory for VM.
2025-06-04 22:38:10 (1965384): Starting VM using VBoxManage interface. (boinc_a919a3434c37a952, slot#1)
2025-06-04 22:38:11 (1965384): Successfully started VM. (PID = '1965837')
2025-06-04 22:38:11 (1965384): Reporting VM Process ID to BOINC.
2025-06-04 22:38:11 (1965384): Guest Log: BIOS: VirtualBox 7.0.16
2025-06-04 22:38:11 (1965384): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 22:38:11 (1965384): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 22:38:11 (1965384): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 22:38:11 (1965384): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 22:38:11 (1965384): Detected: Web Application Enabled (http://localhost:47373)
2025-06-04 22:38:11 (1965384): Detected: Remote Desktop Enabled (localhost:54965)
2025-06-04 22:38:11 (1965384): Preference change detected
2025-06-04 22:38:11 (1965384): Setting CPU throttle for VM. (80%)
2025-06-04 22:38:11 (1965384): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 22:38:13 (1965384): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 22:38:13 (1965384): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 22:38:16 (1965384): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 22:38:16 (1965384): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 22:38:16 (1965384): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 22:38:22 (1965384): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 22:38:22 (1965384): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 22:38:28 (1965384): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000124 main     Log opened 2025-06-04T12:38:26.331435000Z
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000199 main     OS Product: Linux
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000223 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000241 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000259 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000260 main     Process ID: 1273
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.000261 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 22:38:28 (1965384): Guest Log: 00:00:00.001534 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 22:38:28 (1965384): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 22:38:28 (1965384): Guest Log: [INFO] Mounting shared directory
2025-06-04 22:38:28 (1965384): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 22:38:34 (1965384): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 22:38:34 (1965384): Guest Log: [INFO] Detected branch: prod
2025-06-04 22:38:34 (1965384): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 22:38:34 (1965384): Guest Log: Copying input files
2025-06-04 22:38:35 (1965384): Guest Log: Copied input files into RunAtlas.
2025-06-04 22:38:35 (1965384): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 22:38:35 (1965384): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 22:38:35 (1965384): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 22:38:35 (1965384): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 22:38:45 (1965384): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 22:38:46 (1965384): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 22:38:46 (1965384): Guest Log: 2.6.3.0 1548 0 30140 146780 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 22:38:47 (1965384): Guest Log: copied the webapp to /var/www
2025-06-04 22:38:47 (1965384): Guest Log: ATHENA_PROC_NUMBER=3
2025-06-04 22:38:47 (1965384): Guest Log: ATHENA_CORE_NUMBER=3
2025-06-04 22:38:47 (1965384): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 22:38:47 (1965384): Guest Log:  *** Starting ATLAS job. (PandaID=6678597013 taskID=45006595) ***
2025-06-05 00:17:12 (1965384): Status Report: Elapsed Time: '6000.000000'
2025-06-05 00:17:12 (1965384): Status Report: CPU Time: '12898.000000'
2025-06-05 01:56:13 (1965384): Status Report: Elapsed Time: '12000.000000'
2025-06-05 01:56:13 (1965384): Status Report: CPU Time: '27518.910000'
2025-06-05 02:39:33 (1965384): Guest Log:  *** Job finished ***
2025-06-05 02:39:33 (1965384): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:22,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:23,201 | INFO     | [data] copytool_out thread has finished
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:26,989 | INFO     | [data] queue_monitor thread has finished
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:27,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140196385486656)>', '<ExcThread(monitor, started 140195450058496)>']
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:28,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:28,767 | INFO     | [monitor] control thread has ended
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:32,918 | INFO     | all workflow threads have been joined
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:32,919 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:32,919 | INFO     | traces error code: 0
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:32,920 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:32,999 [wrapper] ==== pilot stdout END ====
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,003 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,008 [wrapper] pilotpid: 5851
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,012 [wrapper] Pilot exit status: 0
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,078 [wrapper] pandaids: 6678597013
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,120 [wrapper] cleanup supervisor_pilot 13901 5852
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,127 [wrapper] Test setup, not cleaning
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,135 [wrapper] apfmon messages muted
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,141 [wrapper] ==== wrapper stdout END ====
2025-06-05 02:39:33 (1965384): Guest Log: 2025-06-04 16:39:33,148 [wrapper] ==== wrapper stderr END ====
2025-06-05 02:39:33 (1965384): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 02:39:33 (1965384): Guest Log:     "exeErrorCode": 0,
2025-06-05 02:39:33 (1965384): Guest Log:     "exeErrorDiag": "",
2025-06-05 02:39:33 (1965384): Guest Log:     "pilotErrorCode": 0,
2025-06-05 02:39:33 (1965384): Guest Log:     "pilotErrorDiag": "",
2025-06-05 02:39:33 (1965384): Guest Log:  *** Listing of results directory ***
2025-06-05 02:39:33 (1965384): Guest Log: total 178812
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 07:34 pilot3.tar.gz
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 07:46 queuedata.json
2025-06-05 02:39:33 (1965384): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 07:47 runpilot2-wrapper.sh
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas      6506 Jun  4 12:38 init_data.xml
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 12:38 start_atlas.sh
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas    508881 Jun  4 12:38 input.tar.gz
2025-06-05 02:39:33 (1965384): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 12:38 EVNT.45006593._000498.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas      2524 Jun  4 12:38 pandaJob.out
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas    986811 Jun  4 12:40 agis_schedconf.cvmfs.json
2025-06-05 02:39:33 (1965384): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 12:40 pilot3
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas 176377633 Jun  4 16:38 HITS.45006595._055444.pool.root.1
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 16:38 pilot_heartbeat.json
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas      1030 Jun  4 16:38 memory_monitor_summary.json
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 16:39 agis_ddmendpoints.agis.ALL.json
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas    300987 Jun  4 16:39 log.45006595._055444.job.log.tgz.1
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas      7726 Jun  4 16:39 heartbeat.json
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas      4413 Jun  4 16:39 pilotlog.txt
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas   1180738 Jun  4 16:39 log.45006595._055444.job.log.1
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 16:39 output.list
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 16:39 runtime_log
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas   1505280 Jun  4 16:39 result.tar.gz
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 atlas atlas      8599 Jun  4 16:39 runtime_log.err
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas       659 Jun  4 16:39 IeAMDmO1xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpjnKDm2hSvfn.diag
2025-06-05 02:39:33 (1965384): Guest Log: Looking for outputfile HITS.45006595._055444.pool.root.1
2025-06-05 02:39:33 (1965384): Guest Log: HITS file was successfully produced
2025-06-05 02:39:33 (1965384): Guest Log: -rw-------. 1 atlas atlas 176377633 Jun  4 16:38 /home/atlas/RunAtlas/HITS.45006595._055444.pool.root.1
2025-06-05 02:39:33 (1965384): Guest Log: Successfully finished the ATLAS job!
2025-06-05 02:39:33 (1965384): Guest Log: Copying the results back to the shared directory!
2025-06-05 02:39:33 (1965384): Guest Log:  *** Contents of shared directory: ***
2025-06-05 02:39:33 (1965384): Guest Log: total 211952
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 root root 214992748 Jun  4 12:38 ATLAS.root_0
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 root root      6506 Jun  4 12:38 init_data.xml
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 root root    508881 Jun  4 12:38 input.tar.gz
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 root root   1505280 Jun  4 16:39 result.tar.gz
2025-06-05 02:39:33 (1965384): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 12:38 start_atlas.sh
2025-06-05 02:39:33 (1965384): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 02:39:33 (1965384): VM Completion File Detected.
2025-06-05 02:39:33 (1965384): Powering off VM.
2025-06-05 02:39:34 (1965384): Successfully stopped VM.
2025-06-05 02:39:34 (1965384): Deregistering VM. (boinc_a919a3434c37a952, slot#1)
2025-06-05 02:39:34 (1965384): Removing network bandwidth throttle group from VM.
2025-06-05 02:39:34 (1965384): Removing VM from VirtualBox.
02:39:39 (1965384): called boinc_finish(0)

</stderr_txt>
]]>

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