Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:24:33 (274106): wrapper (7.7.26015): starting
08:24:33 (274106): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:24:33] Arguments: --nthreads 8
[2025-06-04 08:24:33] Threads: 8
[2025-06-04 08:24:33] Checking for CVMFS
[2025-06-04 08:24:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:24:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:24:33] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:24:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:24:33] 2.12.6.0 4995 37308 586096 146780 3 633 17712778 32935936 27381 16776704 1 472626983 99.681 385587306 12574 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:24:33] CVMFS is ok
[2025-06-04 08:24:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:24:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:24:33] Further information can be found at the LHC@home message board.
[2025-06-04 08:24:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:24:33] Checking for apptainer binary...
[2025-06-04 08:24:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:24:33] Running /usr/bin/apptainer --version
[2025-06-04 08:24:33] apptainer version 1.4.1-1.el9
[2025-06-04 08:24:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:24:33] c7-6-31.aglt2.org
[2025-06-04 08:24:33] apptainer works
[2025-06-04 08:24:34] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:24:34] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:24:34] Starting ATLAS job with PandaID=6678789955
[2025-06-04 08:24:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:21:36]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:21:36]  protocol_id=None
[2025-06-04 09:21:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:21:36]  replicas=None
[2025-06-04 09:21:36]  scope=mc23_13p6TeV
[2025-06-04 09:21:36]  status=None
[2025-06-04 09:21:36]  status_code=0
[2025-06-04 09:21:36]  storage_token=
[2025-06-04 09:21:36]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678789955/log.45006595._055593.job.log.tgz.1
[2025-06-04 09:21:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/ae/log.45006595._055593.job.log.tgz.1
[2025-06-04 09:21:36]  workdir=None
[2025-06-04 09:21:36] ]
[2025-06-04 09:21:36] 2025-06-04 13:21:13,092 | INFO     | transferring file log.45006595._055593.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678789955/log.45006595._055593.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:21:36] 2025-06-04 13:21:13,093 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678789955/log.45006595._055593.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._055593.job
[2025-06-04 09:21:36] 2025-06-04 13:21:13,108 | INFO     | adding to output.list: log.45006595._055593.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/17/ae/log.45006595._055593.job.log.tg
[2025-06-04 09:21:36] 2025-06-04 13:21:13,109 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:21:36] 2025-06-04 13:21:13,109 | INFO     | summary of transferred files:
[2025-06-04 09:21:36] 2025-06-04 13:21:13,109 | INFO     |  -- lfn=log.45006595._055593.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:21:36] 2025-06-04 13:21:13,110 | INFO     | stage-out finished correctly
[2025-06-04 09:21:36] 2025-06-04 13:21:13,719 | WARNING  | process 286359 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:21:36] 2025-06-04 13:21:13,720 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678789955/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:21:36] 2025-06-04 13:21:14,171 | INFO     | number of running child processes to parent process 286359: 1
[2025-06-04 09:21:36] 2025-06-04 13:21:14,172 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:21:36] 2025-06-04 13:21:15,954 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:21:36] 2025-06-04 13:21:16,674 | INFO     | monitor loop #248: job 0:6678789955 is in state 'finished'
[2025-06-04 09:21:36] 2025-06-04 13:21:16,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:21:36] 2025-06-04 13:21:18,029 | INFO     | job 6678789955 has state=finished
[2025-06-04 09:21:36] 2025-06-04 13:21:18,030 | INFO     | preparing for final server update for job 6678789955 in state='finished'
[2025-06-04 09:21:36] 2025-06-04 13:21:18,030 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:21:36] 2025-06-04 13:21:18,030 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:21:36] 2025-06-04 13:21:18,030 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:21:36] 2025-06-04 13:21:18,030 | INFO     | job 6678789955 has finished - writing final server update
[2025-06-04 09:21:36] 2025-06-04 13:21:18,031 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:21:36] 2025-06-04 13:21:18,049 | INFO     | executing command: lscpu
[2025-06-04 09:21:36] 2025-06-04 13:21:18,138 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:21:36] 2025-06-04 13:21:19,177 | INFO     | monitor loop #249: job 0:6678789955 is in state 'finished'
[2025-06-04 09:21:36] 2025-06-04 13:21:19,178 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:21:36] 2025-06-04 13:21:20,420 | INFO     | PID=277741 has CPU usage=15.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 09:21:36] 2025-06-04 13:21:20,420 | INFO     | .. there are 36 such processes running
[2025-06-04 09:21:36] 2025-06-04 13:21:21,680 | INFO     | monitor loop #250: job 0:6678789955 is in state 'finished'
[2025-06-04 09:21:36] 2025-06-04 13:21:21,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,228 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:21:36] 2025-06-04 13:21:22,229 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678789955/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,230 | INFO     | extracted standard info from prmon json
[2025-06-04 09:21:36] 2025-06-04 13:21:22,230 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:21:36] 2025-06-04 13:21:22,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:21:36] 2025-06-04 13:21:22,231 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:21:36] 2025-06-04 13:21:22,231 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:21:36] 2025-06-04 13:21:22,232 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | sum of square deviations: 36465800.0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | sum of deviations: 5101530650.000001
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | mean x: 1749041677.0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | mean y: 2259814.673469388
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | -- intersect: -244687003093.1169
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | intersect: -244687003093.1169
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | chi2: 0.7761471312949624
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | -- intersect: -244687003093.1169
[2025-06-04 09:21:36] 2025-06-04 13:21:22,233 | INFO     | current memory leak: 139.90 B/s (using 49 data points, chi2=0.78)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,234 | INFO     | ..............................
[2025-06-04 09:21:36] 2025-06-04 13:21:22,234 | INFO     | . Timing measurements:
[2025-06-04 09:21:36] 2025-06-04 13:21:22,234 | INFO     | . get job = 0 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,234 | INFO     | . initial setup = 2 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,234 | INFO     | . payload setup = 5 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,235 | INFO     | . stage-in = 0 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,235 | INFO     | . payload execution = 3365 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,235 | INFO     | . stage-out = 0 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,235 | INFO     | . log creation = 0 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,235 | INFO     | ..............................
[2025-06-04 09:21:36] 2025-06-04 13:21:22,315 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | job summary report
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | --------------------------------------------------
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | PanDA job id: 6678789955
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | task id: 45006595
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | errors: (none)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | pilot state: finished 
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | transexitcode: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | exeerrorcode: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | exeerrordiag: 
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | exitcode: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | exitmsg: OK
[2025-06-04 09:21:36] 2025-06-04 13:21:22,316 | INFO     | cpuconsumptiontime: 22182 s
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | nevents: 400
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | neventsw: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | pid: 286359
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | pgrp: 286359
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | corecount: 8
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | event service: False
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | sizes: {0: 2397235, 4: 2397441, 11: 2397469, 3374: 2422937, 3375: 2431878, 3378: 2431934, 3384: 2432232}
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | --------------------------------------------------
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 13:21:22,317 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 09:21:36] 2025-06-04 13:21:22,339 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | job 6678789955 has completed (purged errors)
[2025-06-04 09:21:36] 2025-06-04 13:21:22,341 | INFO     | overall cleanup function is called
[2025-06-04 09:21:36] 2025-06-04 13:21:23,349 | INFO     | --- collectZombieJob: --- 10, [286359]
[2025-06-04 09:21:36] 2025-06-04 13:21:23,350 | INFO     | zombie collector waiting for pid 286359
[2025-06-04 09:21:36] 2025-06-04 13:21:23,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:21:36] 2025-06-04 13:21:23,350 | INFO     | collected zombie processes
[2025-06-04 09:21:36] 2025-06-04 13:21:23,350 | INFO     | will attempt to kill all subprocesses of pid=286359
[2025-06-04 09:21:36] 2025-06-04 13:21:23,793 | INFO     | process IDs to be killed: [286359] (in reverse order)
[2025-06-04 09:21:36] 2025-06-04 13:21:23,930 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:21:36] 2025-06-04 13:21:23,930 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:21:36] 2025-06-04 13:21:23,951 | INFO     | did not find any defunct processes belonging to 286359
[2025-06-04 09:21:36] 2025-06-04 13:21:23,972 | INFO     | did not find any defunct processes belonging to 286359
[2025-06-04 09:21:36] 2025-06-04 13:21:23,973 | INFO     | ready for new job
[2025-06-04 09:21:36] 2025-06-04 13:21:23,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:21:36] 2025-06-04 13:21:23,974 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 13:21:23,974 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:21:36] 2025-06-04 13:21:23,975 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 13:21:23,975 | INFO     | 
[2025-06-04 09:21:36] 2025-06-04 13:21:23,994 | INFO     | architecture information:
[2025-06-04 09:21:36] 2025-06-04 13:21:23,995 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:21:36] 2025-06-04 13:21:24,012 | INFO     | cat /etc/os-release:
[2025-06-04 09:21:36] NAME="CentOS Linux"
[2025-06-04 09:21:36] VERSION="7 (Core)"
[2025-06-04 09:21:36] ID="centos"
[2025-06-04 09:21:36] ID_LIKE="rhel fedora"
[2025-06-04 09:21:36] VERSION_ID="7"
[2025-06-04 09:21:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:21:36] ANSI_COLOR="0;31"
[2025-06-04 09:21:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:21:36] HOME_URL="https://www.centos.org/"
[2025-06-04 09:21:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:21:36] 
[2025-06-04 09:21:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:21:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:21:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:21:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:21:36] 
[2025-06-04 09:21:36] 2025-06-04 13:21:24,012 | INFO     | **************************************
[2025-06-04 09:21:36] 2025-06-04 13:21:24,514 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 09:21:36] 2025-06-04 13:21:24,532 | INFO     | sufficient remaining disk space (75342282752 B)
[2025-06-04 09:21:36] 2025-06-04 13:21:24,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:21:36] 2025-06-04 13:21:24,532 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:21:36] 2025-06-04 13:21:24,532 | INFO     | update_server=False
[2025-06-04 09:21:36] 2025-06-04 13:21:24,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:21:36] 2025-06-04 13:21:24,533 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:21:36] 2025-06-04 13:21:24,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 13:21:24,534 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:21:36] 2025-06-04 13:21:24,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:21:36] 2025-06-04 13:21:24,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:21:36] 2025-06-04 13:21:24,673 | INFO     | all data control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 13:21:24,784 | INFO     | all payload control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 13:21:25,146 | INFO     | all job control threads have been joined
[2025-06-04 09:21:36] 2025-06-04 13:21:25,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 13:21:25,188 | INFO     | aborting loop
[2025-06-04 09:21:36] 2025-06-04 13:21:25,537 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,558 | INFO     | [job] validate thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,679 | INFO     | [data] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,774 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,789 | INFO     | [payload] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,884 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:25,933 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,050 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,151 | INFO     | [job] control thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,193 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,451 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 13:21:26,539 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,935 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:26,959 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:27,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:21:36] 2025-06-04 13:21:28,330 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:30,539 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:21:36] 2025-06-04 13:21:31,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140516037662528)>', '<ExcThread(monitor, started 140515408336640)>']
[2025-06-04 09:21:36] 2025-06-04 13:21:31,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:21:36] 2025-06-04 13:21:31,566 | INFO     | [monitor] control thread has ended
[2025-06-04 09:21:36] 2025-06-04 13:21:36,497 | INFO     | all workflow threads have been joined
[2025-06-04 09:21:36] 2025-06-04 13:21:36,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:21:36] 2025-06-04 13:21:36,498 | INFO     | traces error code: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:36,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:21:36] 2025-06-04 13:21:36,625 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:21:36] 2025-06-04 13:21:36,628 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:21:36] 2025-06-04 13:21:36,631 [wrapper] pilotpid: 277741
[2025-06-04 09:21:36] 2025-06-04 13:21:36,636 [wrapper] Pilot exit status: 0
[2025-06-04 09:21:36] 2025-06-04 13:21:36,647 [wrapper] pandaids: 6678789955
[2025-06-04 09:21:36] 2025-06-04 13:21:36,754 [wrapper] cleanup supervisor_pilot  737521 277742
[2025-06-04 09:21:36] 2025-06-04 13:21:36,757 [wrapper] Test setup, not cleaning
[2025-06-04 09:21:36] 2025-06-04 13:21:36,759 [wrapper] apfmon messages muted
[2025-06-04 09:21:36] 2025-06-04 13:21:36,761 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:21:36] 2025-06-04 13:21:36,765 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:21:36]  *** Error codes and diagnostics ***
[2025-06-04 09:21:36]     "exeErrorCode": 0,
[2025-06-04 09:21:36]     "exeErrorDiag": "",
[2025-06-04 09:21:36]     "pilotErrorCode": 0,
[2025-06-04 09:21:36]     "pilotErrorDiag": "",
[2025-06-04 09:21:36]  *** Listing of results directory ***
[2025-06-04 09:21:36] total 389032
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:34 pilot3.tar.gz
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:56 queuedata.json
[2025-06-04 09:21:36] -rwx------. 1 boincer umatlas     37140 Jun  4 03:57 runpilot2-wrapper.sh
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:21:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:24 run_atlas
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:24 job.xml
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas 213867639 Jun  4 08:24 EVNT.45006593._001087.pool.root.1
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:24 start_atlas.sh
[2025-06-04 09:21:36] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:24 shared
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 08:24 input.tar.gz
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:24 boinc_lockfile
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas      2521 Jun  4 08:24 pandaJob.out
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas    986811 Jun  4 08:24 agis_schedconf.cvmfs.json
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:24 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:21:36] drwx------. 4 boincer umatlas      4096 Jun  4 08:24 pilot3
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas      6933 Jun  4 09:12 init_data.xml
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas 179436872 Jun  4 09:20 HITS.45006595._055593.pool.root.1
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:20 boinc_task_state.xml
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas        95 Jun  4 09:20 pilot_heartbeat.json
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas      1034 Jun  4 09:21 memory_monitor_summary.json
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas    278085 Jun  4 09:21 log.45006595._055593.job.log.tgz.1
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas      7690 Jun  4 09:21 heartbeat.json
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:21 boinc_mmap_file
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas      4476 Jun  4 09:21 pilotlog.txt
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:21 wrapper_checkpoint.txt
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas    342322 Jun  4 09:21 log.45006595._055593.job.log.1
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas       357 Jun  4 09:21 output.list
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:21 runtime_log
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas    634880 Jun  4 09:21 result.tar.gz
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas       650 Jun  4 09:21 w0xKDm2Ayg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmslnKDmdLSStm.diag
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 09:21 runtime_log.err
[2025-06-04 09:21:36] -rw-r--r--. 1 boincer umatlas     21850 Jun  4 09:21 stderr.txt
[2025-06-04 09:21:36] HITS file was successfully produced:
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas 179436872 Jun  4 09:20 shared/HITS.pool.root.1
[2025-06-04 09:21:36]  *** Contents of shared directory: ***
[2025-06-04 09:21:36] total 385232
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas 213867639 Jun  4 08:24 ATLAS.root_0
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:24 start_atlas.sh
[2025-06-04 09:21:36] -rw-r--r--. 2 boincer umatlas    508877 Jun  4 08:24 input.tar.gz
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas 179436872 Jun  4 09:20 HITS.pool.root.1
[2025-06-04 09:21:36] -rw-------. 1 boincer umatlas    634880 Jun  4 09:21 result.tar.gz
09:21:38 (274106): run_atlas exited; CPU time 22291.766016
09:21:38 (274106): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN