Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:43:23 (19686): wrapper (7.7.26015): starting
21:43:23 (19686): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 21:43:23] Arguments: --nthreads 8
[2025-06-04 21:43:23] Threads: 8
[2025-06-04 21:43:23] Checking for CVMFS
[2025-06-04 21:43:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 21:43:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 21:43:25] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 21:43:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 21:43:26] 2.11.2.0 18967 33739 95076 146792 0 16 23941807 25165825 3519 130560 0 17249055 99.819 18923804 2482 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 21:43:26] CVMFS is ok
[2025-06-04 21:43:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 21:43:26] Checking for apptainer binary...
[2025-06-04 21:43:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 21:43:26] Running /usr/bin/apptainer --version
[2025-06-04 21:43:26] apptainer version 1.3.2-1.el7
[2025-06-04 21:43:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 21:43:37] cg-vwn474.simple-grid.lan
[2025-06-04 21:43:37] apptainer works
[2025-06-04 21:43:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 21:43:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 21:43:37] Starting ATLAS job with PandaID=6678717220
[2025-06-04 21:43:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 01:36:28]  *** The last 200 lines of the pilot log: ***
[2025-06-05 01:36:28] 2025-06-04 23:26:41,212 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 01:36:28] 2025-06-04 23:26:41,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 01:36:28] 2025-06-04 23:26:41,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 01:36:28] 2025-06-04 23:26:41,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 01:36:28] 2025-06-04 23:26:41,216 | INFO     | fitting pss+swap vs Time
[2025-06-05 01:36:28] 2025-06-04 23:26:41,217 | INFO     | sum of square deviations: 2750295288.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,218 | INFO     | sum of deviations: 65918075956.00003
[2025-06-05 01:36:28] 2025-06-04 23:26:41,219 | INFO     | mean x: 1749073187.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,219 | INFO     | mean y: 2417265.053140097
[2025-06-05 01:36:28] 2025-06-04 23:26:41,219 | INFO     | -- intersect: -41918731964.385185
[2025-06-05 01:36:28] 2025-06-04 23:26:41,219 | INFO     | intersect: -41918731964.385185
[2025-06-05 01:36:28] 2025-06-04 23:26:41,219 | INFO     | chi2: 5.596526370504805
[2025-06-05 01:36:28] 2025-06-04 23:26:41,220 | INFO     | sum of square deviations: 2555770710.5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,224 | INFO     | sum of deviations: 77744137873.49997
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | mean x: 1749073034.5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | mean y: 2426327.0346534653
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | -- intersect: -53202728026.73223
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | intersect: -53202728026.73223
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | chi2: 4.870086328272752
[2025-06-05 01:36:28] 2025-06-04 23:26:41,225 | INFO     | current chi2=4.870086328272752 (change=12.980195109248255 %)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,226 | INFO     | right removable region: 201
[2025-06-05 01:36:28] 2025-06-04 23:26:41,226 | INFO     | sum of square deviations: 2555770710.5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,227 | INFO     | sum of deviations: 236951175.49998856
[2025-06-05 01:36:28] 2025-06-04 23:26:41,227 | INFO     | mean x: 1749073339.5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,228 | INFO     | mean y: 2468669.6584158414
[2025-06-05 01:36:28] 2025-06-04 23:26:41,228 | INFO     | -- intersect: -159691801.9862159
[2025-06-05 01:36:28] 2025-06-04 23:26:41,228 | INFO     | intersect: -159691801.9862159
[2025-06-05 01:36:28] 2025-06-04 23:26:41,228 | INFO     | chi2: 1.5013184066401994
[2025-06-05 01:36:28] 2025-06-04 23:26:41,228 | INFO     | current chi2=1.5013184066401994 (change=73.1741028765173 %)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,229 | INFO     | sum of square deviations: 2370641658.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,230 | INFO     | sum of deviations: -20754891442.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,230 | INFO     | mean x: 1749073492.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,230 | INFO     | mean y: 2485778.5126903555
[2025-06-05 01:36:28] 2025-06-04 23:26:41,230 | INFO     | -- intersect: 15315567925.717516
[2025-06-05 01:36:28] 2025-06-04 23:26:41,230 | INFO     | intersect: 15315567925.717516
[2025-06-05 01:36:28] 2025-06-04 23:26:41,231 | INFO     | chi2: 0.8718651213230513
[2025-06-05 01:36:28] 2025-06-04 23:26:41,231 | INFO     | current chi2=0.8718651213230513 (change=41.92670139346401 %)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,231 | INFO     | sum of square deviations: 2194675568.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,232 | INFO     | sum of deviations: -17738016455.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | mean x: 1749073644.5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | mean y: 2483117.34375
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | -- intersect: 14139013153.726704
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | intersect: 14139013153.726704
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | chi2: 0.8531410263848539
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | current chi2=0.8531410263848539 (change=2.1475907775486704 %)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,233 | INFO     | left removable region: 30
[2025-06-05 01:36:28] 2025-06-04 23:26:41,234 | INFO     | sum of square deviations: 1550429070.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,235 | INFO     | sum of deviations: 2673540269.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,235 | INFO     | mean x: 1749073919.0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,235 | INFO     | mean y: 2487421.50877193
[2025-06-05 01:36:28] 2025-06-04 23:26:41,235 | INFO     | -- intersect: -3013593511.432033
[2025-06-05 01:36:28] 2025-06-04 23:26:41,235 | INFO     | intersect: -3013593511.432033
[2025-06-05 01:36:28] 2025-06-04 23:26:41,236 | INFO     | chi2: 0.00015244610185186845
[2025-06-05 01:36:28] 2025-06-04 23:26:41,236 | INFO     | -- intersect: -3013593511.432033
[2025-06-05 01:36:28] 2025-06-04 23:26:41,236 | INFO     | current memory leak: 1.72 B/s (using 171 data points, chi2=0.00)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | ..............................
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . Timing measurements:
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . get job = 0 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . initial setup = 5 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . payload setup = 158 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . stage-in = 0 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . payload execution = 12771 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . stage-out = 3 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | . log creation = 1 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,237 | INFO     | ..............................
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | 
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | job summary report
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | --------------------------------------------------
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | PanDA job id: 6678717220
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | task id: 45006595
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | errors: (none)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 01:36:28] 2025-06-04 23:26:41,347 | INFO     | pilot state: finished 
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | transexitcode: 0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | exeerrorcode: 0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | exeerrordiag: 
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | exitcode: 0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | exitmsg: OK
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | cpuconsumptiontime: 45817 s
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | nevents: 400
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | neventsw: 0
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | pid: 31805
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | pgrp: 31805
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | corecount: 8
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | event service: False
[2025-06-05 01:36:28] 2025-06-04 23:26:41,348 | INFO     | sizes: {0: 2397290, 1: 2397290, 12: 2397318, 22: 2397346, 33: 2397374, 44: 2397430, 54: 2397586, 65: 2397614, 76: 2397642, 82: 2397904, 87: 2397960, 12934: 2427490
[2025-06-05 01:36:28] 2025-06-04 23:26:41,349 | INFO     | --------------------------------------------------
[2025-06-05 01:36:28] 2025-06-04 23:26:41,349 | INFO     | 
[2025-06-05 01:36:28] 2025-06-04 23:26:41,349 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 01:36:28] 2025-06-04 23:26:41,660 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,660 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,660 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,660 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,661 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | job 6678717220 has completed (purged errors)
[2025-06-05 01:36:28] 2025-06-04 23:26:41,662 | INFO     | overall cleanup function is called
[2025-06-05 01:36:28] 2025-06-04 23:26:42,671 | INFO     | --- collectZombieJob: --- 10, [31805]
[2025-06-05 01:36:28] 2025-06-04 23:26:42,671 | INFO     | zombie collector waiting for pid 31805
[2025-06-05 01:36:28] 2025-06-04 23:26:42,672 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 01:36:28] 2025-06-04 23:26:42,672 | INFO     | collected zombie processes
[2025-06-05 01:36:28] 2025-06-04 23:26:42,672 | INFO     | will attempt to kill all subprocesses of pid=31805
[2025-06-05 01:36:28] 2025-06-04 23:26:42,784 | INFO     | process IDs to be killed: [31805] (in reverse order)
[2025-06-05 01:36:28] 2025-06-04 23:26:43,107 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 01:36:28] 2025-06-04 23:26:43,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 01:36:28] 2025-06-04 23:26:43,111 | INFO     | did not find any defunct processes belonging to 31805
[2025-06-05 01:36:28] 2025-06-04 23:26:43,117 | INFO     | did not find any defunct processes belonging to 31805
[2025-06-05 01:36:28] 2025-06-04 23:26:43,118 | INFO     | ready for new job
[2025-06-05 01:36:28] 2025-06-04 23:26:43,118 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 01:36:28] 2025-06-04 23:26:43,120 | INFO     | **************************************
[2025-06-05 01:36:28] 2025-06-04 23:26:43,120 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 01:36:28] 2025-06-04 23:26:43,120 | INFO     | **************************************
[2025-06-05 01:36:28] 2025-06-04 23:26:43,120 | INFO     | 
[2025-06-05 01:36:28] 2025-06-04 23:26:43,121 | INFO     | pilot is running in a VM
[2025-06-05 01:36:28] 2025-06-04 23:26:43,121 | INFO     | architecture information:
[2025-06-05 01:36:28] 2025-06-04 23:26:43,123 | INFO     | executing command: cat /etc/os-release
[2025-06-05 01:36:28] 2025-06-04 23:26:43,285 | INFO     | cat /etc/os-release:
[2025-06-05 01:36:28] NAME="CentOS Linux"
[2025-06-05 01:36:28] VERSION="7 (Core)"
[2025-06-05 01:36:28] ID="centos"
[2025-06-05 01:36:28] ID_LIKE="rhel fedora"
[2025-06-05 01:36:28] VERSION_ID="7"
[2025-06-05 01:36:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 01:36:28] ANSI_COLOR="0;31"
[2025-06-05 01:36:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 01:36:28] HOME_URL="https://www.centos.org/"
[2025-06-05 01:36:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 01:36:28] 
[2025-06-05 01:36:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 01:36:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 01:36:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 01:36:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 01:36:28] 
[2025-06-05 01:36:28] 2025-06-04 23:26:43,286 | INFO     | **************************************
[2025-06-05 01:36:28] 2025-06-04 23:26:43,789 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 01:36:28] 2025-06-04 23:26:43,946 | INFO     | sufficient remaining disk space (497257807872 B)
[2025-06-05 01:36:28] 2025-06-04 23:26:43,946 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 01:36:28] 2025-06-04 23:26:43,946 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | INFO     | update_server=False
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 01:36:28] 2025-06-04 23:26:43,947 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 01:36:28] 2025-06-04 23:26:43,999 | INFO     | all payload control threads have been joined
[2025-06-05 01:36:28] 2025-06-04 23:26:44,112 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 01:36:28] 2025-06-04 23:26:44,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:36:28] 2025-06-04 23:26:44,377 | INFO     | aborting loop
[2025-06-05 01:36:28] 2025-06-04 23:26:44,782 | INFO     | all data control threads have been joined
[2025-06-05 01:36:28] 2025-06-04 23:26:44,952 | INFO     | [job] retrieve thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,005 | INFO     | [payload] control thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,196 | INFO     | all job control threads have been joined
[2025-06-05 01:36:28] 2025-06-04 23:26:45,383 | INFO     | [job] job monitor thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,384 | INFO     | [job] validate thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,431 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 01:36:28] 2025-06-04 23:26:45,580 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,788 | INFO     | [data] control thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:45,896 | INFO     | [payload] validate_post thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,105 | INFO     | [data] copytool_in thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,119 | INFO     | [data] copytool_out thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,127 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,202 | INFO     | [job] control thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,355 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:46,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 01:36:28] 2025-06-04 23:26:46,506 | INFO     | [payload] failed_post thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:47,368 | INFO     | [job] queue monitor thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:49,440 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:54,677 | INFO     | job.realtimelogging is not enabled
[2025-06-05 01:36:28] 2025-06-04 23:26:55,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 01:36:28] 2025-06-04 23:26:57,330 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140648079202112)>', '<ExcThread(monitor, started 140647419864832)>']
[2025-06-05 01:36:28] 2025-06-04 23:26:58,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 01:36:28] 2025-06-04 23:26:58,031 | INFO     | [monitor] control thread has ended
[2025-06-05 01:36:28] 2025-06-04 23:27:02,356 | INFO     | all workflow threads have been joined
[2025-06-05 01:36:28] 2025-06-04 23:27:02,356 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 01:36:28] 2025-06-04 23:27:02,357 | INFO     | traces error code: 0
[2025-06-05 01:36:28] 2025-06-04 23:27:02,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 01:36:28] 2025-06-04 23:27:02,739 [wrapper] ==== pilot stdout END ====
[2025-06-05 01:36:28] 2025-06-04 23:27:02,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 01:36:28] 2025-06-04 23:27:02,928 [wrapper] pilotpid: 25195
[2025-06-05 01:36:28] 2025-06-04 23:27:02,962 [wrapper] Pilot exit status: 0
[2025-06-05 01:36:28] 2025-06-04 23:27:03,449 [wrapper] pandaids: 6678717220
[2025-06-05 01:36:28] 2025-06-04 23:27:04,263 [wrapper] cleanup supervisor_pilot 18298 25196
[2025-06-05 01:36:28] 2025-06-04 23:27:04,385 [wrapper] Test setup, not cleaning
[2025-06-05 01:36:28] 2025-06-04 23:27:04,500 [wrapper] apfmon messages muted
[2025-06-05 01:36:28] 2025-06-04 23:27:04,618 [wrapper] ==== wrapper stdout END ====
[2025-06-05 01:36:28] 2025-06-04 23:27:04,726 [wrapper] ==== wrapper stderr END ====
[2025-06-05 01:36:28]  *** Error codes and diagnostics ***
[2025-06-05 01:36:28]     "exeErrorCode": 0,
[2025-06-05 01:36:28]     "exeErrorDiag": "",
[2025-06-05 01:36:28]     "pilotErrorCode": 0,
[2025-06-05 01:36:28]     "pilotErrorDiag": "",
[2025-06-05 01:36:28]  *** Listing of results directory ***
[2025-06-05 01:36:28] total 390040
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc    495897 Jun  4 09:34 pilot3.tar.gz
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc      5111 Jun  4 09:51 queuedata.json
[2025-06-05 01:36:28] -rwx------. 1 boinc boinc     37140 Jun  4 09:53 runpilot2-wrapper.sh
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc       100 Jun  4 21:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 01:36:28] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 21:43 run_atlas
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc       105 Jun  4 21:43 job.xml
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc 215712299 Jun  4 21:43 EVNT.45006593._000617.pool.root.1
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc     15093 Jun  4 21:43 start_atlas.sh
[2025-06-05 01:36:28] drwxrwx--x. 2 boinc boinc        68 Jun  4 21:43 shared
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc    508883 Jun  4 21:43 input.tar.gz
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc      6392 Jun  4 21:43 init_data.xml
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc         0 Jun  4 21:43 boinc_lockfile
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc      2524 Jun  4 21:43 pandaJob.out
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc    991007 Jun  4 21:46 agis_schedconf.cvmfs.json
[2025-06-05 01:36:28] drwx------. 4 boinc boinc      4096 Jun  4 21:46 pilot3
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc 176850100 Jun  5 01:24 HITS.45006595._055514.pool.root.1
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc       531 Jun  5 01:24 boinc_task_state.xml
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc      1020 Jun  5 01:25 memory_monitor_summary.json
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc   1598969 Jun  5 01:25 agis_ddmendpoints.agis.ALL.json
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc    375957 Jun  5 01:25 log.45006595._055514.job.log.tgz.1
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc        95 Jun  5 01:26 pilot_heartbeat.json
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc      7691 Jun  5 01:26 heartbeat.json
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc      4611 Jun  5 01:27 pilotlog.txt
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc   1133138 Jun  5 01:27 log.45006595._055514.job.log.1
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc       357 Jun  5 01:27 output.list
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc       620 Jun  5 01:27 runtime_log
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc   1525760 Jun  5 01:27 result.tar.gz
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc      8659 Jun  5 01:27 runtime_log.err
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc       657 Jun  5 01:27 6eaNDm76xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzknKDm83mnqm.diag
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc      8192 Jun  5 01:36 boinc_mmap_file
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc        28 Jun  5 01:36 wrapper_checkpoint.txt
[2025-06-05 01:36:28] -rw-r--r--. 1 boinc boinc     20502 Jun  5 01:36 stderr.txt
[2025-06-05 01:36:28] HITS file was successfully produced:
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc 176850100 Jun  5 01:24 shared/HITS.pool.root.1
[2025-06-05 01:36:28]  *** Contents of shared directory: ***
[2025-06-05 01:36:28] total 385376
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc 215712299 Jun  4 21:43 ATLAS.root_0
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc     15093 Jun  4 21:43 start_atlas.sh
[2025-06-05 01:36:28] -rw-r--r--. 2 boinc boinc    508883 Jun  4 21:43 input.tar.gz
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc 176850100 Jun  5 01:24 HITS.pool.root.1
[2025-06-05 01:36:28] -rw-------. 1 boinc boinc   1525760 Jun  5 01:27 result.tar.gz
01:36:30 (19686): run_atlas exited; CPU time 45991.197209
01:36:30 (19686): called boinc_finish(0)

</stderr_txt>
]]>

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