Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:35:34 (484064): wrapper (7.7.26015): starting
08:35:34 (484064): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:35:34] Arguments: --nthreads 8
[2025-06-04 08:35:34] Threads: 8
[2025-06-04 08:35:34] Checking for CVMFS
[2025-06-04 08:35:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:35:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:35:35] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:35:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:35:35] 2.12.6.0 1062744 23254 456464 146780 3 71 26948657 32935936 6371 16776704 0 112407321 99.670 109120535 34232 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:35:35] CVMFS is ok
[2025-06-04 08:35:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:35:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:35:35] Further information can be found at the LHC@home message board.
[2025-06-04 08:35:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:35:35] Checking for apptainer binary...
[2025-06-04 08:35:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:35:35] Running /usr/bin/apptainer --version
[2025-06-04 08:35:35] apptainer version 1.4.1-1.el9
[2025-06-04 08:35:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:35:35] c6-4-5-2.aglt2.org
[2025-06-04 08:35:35] apptainer works
[2025-06-04 08:35:35] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:35:35] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:35:35] Starting ATLAS job with PandaID=6678390320
[2025-06-04 08:35:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:25:20]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:25:20]  is_altstaged=None
[2025-06-04 09:25:20]  is_tar=False
[2025-06-04 09:25:20]  lfn=log.45006595._054771.job.log.tgz.1
[2025-06-04 09:25:20]  mtime=0
[2025-06-04 09:25:20]  protocol_id=None
[2025-06-04 09:25:20]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:25:20]  replicas=None
[2025-06-04 09:25:20]  scope=mc23_13p6TeV
[2025-06-04 09:25:20]  status=None
[2025-06-04 09:25:20]  status_code=0
[2025-06-04 09:25:20]  storage_token=
[2025-06-04 09:25:20]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678390320/log.45006595._054771.job.log.tgz.1
[2025-06-04 09:25:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/74/log.45006595._054771.job.log.tgz.1
[2025-06-04 09:25:20]  workdir=None
[2025-06-04 09:25:20] ]
[2025-06-04 09:25:20] 2025-06-04 13:24:56,244 | INFO     | transferring file log.45006595._054771.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678390320/log.45006595._054771.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:25:20] 2025-06-04 13:24:56,245 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678390320/log.45006595._054771.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._054771.job
[2025-06-04 09:25:20] 2025-06-04 13:24:56,256 | INFO     | adding to output.list: log.45006595._054771.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c9/74/log.45006595._054771.job.log.tg
[2025-06-04 09:25:20] 2025-06-04 13:24:56,256 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:25:20] 2025-06-04 13:24:56,256 | INFO     | summary of transferred files:
[2025-06-04 09:25:20] 2025-06-04 13:24:56,256 | INFO     |  -- lfn=log.45006595._054771.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:25:20] 2025-06-04 13:24:56,257 | INFO     | stage-out finished correctly
[2025-06-04 09:25:20] 2025-06-04 13:24:56,777 | WARNING  | process 496094 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:25:20] 2025-06-04 13:24:56,777 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678390320/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:25:20] 2025-06-04 13:24:56,887 | INFO     | number of running child processes to parent process 496094: 1
[2025-06-04 09:25:20] 2025-06-04 13:24:56,887 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:25:20] 2025-06-04 13:24:57,706 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:25:20] 2025-06-04 13:24:59,389 | INFO     | monitor loop #225: job 0:6678390320 is in state 'finished'
[2025-06-04 09:25:20] 2025-06-04 13:24:59,390 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:25:20] 2025-06-04 13:24:59,900 | INFO     | job 6678390320 has state=finished
[2025-06-04 09:25:20] 2025-06-04 13:24:59,900 | INFO     | preparing for final server update for job 6678390320 in state='finished'
[2025-06-04 09:25:20] 2025-06-04 13:24:59,900 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:25:20] 2025-06-04 13:24:59,901 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:25:20] 2025-06-04 13:24:59,901 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:25:20] 2025-06-04 13:24:59,901 | INFO     | job 6678390320 has finished - writing final server update
[2025-06-04 09:25:20] 2025-06-04 13:24:59,901 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:25:20] 2025-06-04 13:24:59,915 | INFO     | executing command: lscpu
[2025-06-04 09:25:20] 2025-06-04 13:24:59,968 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:25:20] 2025-06-04 13:25:01,893 | INFO     | monitor loop #226: job 0:6678390320 is in state 'finished'
[2025-06-04 09:25:20] 2025-06-04 13:25:01,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,016 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:25:20] 2025-06-04 13:25:02,016 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678390320/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,017 | INFO     | extracted standard info from prmon json
[2025-06-04 09:25:20] 2025-06-04 13:25:02,017 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:25:20] 2025-06-04 13:25:02,017 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:25:20] 2025-06-04 13:25:02,017 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:25:20] 2025-06-04 13:25:02,017 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | sum of square deviations: 22960430.5
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | sum of deviations: 2045916728.4999998
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | mean x: 1749042117.5
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | mean y: 2315408.0714285714
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | -- intersect: -155848182562.52682
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | intersect: -155848182562.52682
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | chi2: 0.4855334250938231
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | -- intersect: -155848182562.52682
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | current memory leak: 89.11 B/s (using 42 data points, chi2=0.49)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | ..............................
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | . Timing measurements:
[2025-06-04 09:25:20] 2025-06-04 13:25:02,018 | INFO     | . get job = 0 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . initial setup = 2 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . payload setup = 4 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . stage-in = 0 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . payload execution = 2935 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . stage-out = 0 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | . log creation = 0 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,019 | INFO     | ..............................
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | 
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | job summary report
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | --------------------------------------------------
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | PanDA job id: 6678390320
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | task id: 45006595
[2025-06-04 09:25:20] 2025-06-04 13:25:02,060 | INFO     | errors: (none)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | pilot state: finished 
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | transexitcode: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | exeerrorcode: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | exeerrordiag: 
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | exitcode: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | exitmsg: OK
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | cpuconsumptiontime: 18826 s
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | nevents: 400
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | neventsw: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | pid: 496094
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | pgrp: 496094
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | corecount: 8
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | event service: False
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | sizes: {0: 2397342, 3: 2397548, 11: 2397576, 2940: 2422932, 2941: 2431873, 2943: 2431929, 2947: 2432227}
[2025-06-04 09:25:20] 2025-06-04 13:25:02,061 | INFO     | --------------------------------------------------
[2025-06-04 09:25:20] 2025-06-04 13:25:02,062 | INFO     | 
[2025-06-04 09:25:20] 2025-06-04 13:25:02,062 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 09:25:20] 2025-06-04 13:25:02,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | job 6678390320 has completed (purged errors)
[2025-06-04 09:25:20] 2025-06-04 13:25:02,076 | INFO     | overall cleanup function is called
[2025-06-04 09:25:20] 2025-06-04 13:25:03,083 | INFO     | --- collectZombieJob: --- 10, [496094]
[2025-06-04 09:25:20] 2025-06-04 13:25:03,084 | INFO     | zombie collector waiting for pid 496094
[2025-06-04 09:25:20] 2025-06-04 13:25:03,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:25:20] 2025-06-04 13:25:03,084 | INFO     | collected zombie processes
[2025-06-04 09:25:20] 2025-06-04 13:25:03,084 | INFO     | will attempt to kill all subprocesses of pid=496094
[2025-06-04 09:25:20] 2025-06-04 13:25:03,249 | INFO     | process IDs to be killed: [496094] (in reverse order)
[2025-06-04 09:25:20] 2025-06-04 13:25:03,289 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:25:20] 2025-06-04 13:25:03,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:25:20] 2025-06-04 13:25:03,294 | INFO     | did not find any defunct processes belonging to 496094
[2025-06-04 09:25:20] 2025-06-04 13:25:03,299 | INFO     | did not find any defunct processes belonging to 496094
[2025-06-04 09:25:20] 2025-06-04 13:25:03,299 | INFO     | ready for new job
[2025-06-04 09:25:20] 2025-06-04 13:25:03,299 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:25:20] 2025-06-04 13:25:03,300 | INFO     | **************************************
[2025-06-04 09:25:20] 2025-06-04 13:25:03,300 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:25:20] 2025-06-04 13:25:03,300 | INFO     | **************************************
[2025-06-04 09:25:20] 2025-06-04 13:25:03,300 | INFO     | 
[2025-06-04 09:25:20] 2025-06-04 13:25:03,313 | INFO     | architecture information:
[2025-06-04 09:25:20] 2025-06-04 13:25:03,313 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:25:20] 2025-06-04 13:25:03,321 | INFO     | cat /etc/os-release:
[2025-06-04 09:25:20] NAME="CentOS Linux"
[2025-06-04 09:25:20] VERSION="7 (Core)"
[2025-06-04 09:25:20] ID="centos"
[2025-06-04 09:25:20] ID_LIKE="rhel fedora"
[2025-06-04 09:25:20] VERSION_ID="7"
[2025-06-04 09:25:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:25:20] ANSI_COLOR="0;31"
[2025-06-04 09:25:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:25:20] HOME_URL="https://www.centos.org/"
[2025-06-04 09:25:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:25:20] 
[2025-06-04 09:25:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:25:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:25:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:25:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:25:20] 
[2025-06-04 09:25:20] 2025-06-04 13:25:03,321 | INFO     | **************************************
[2025-06-04 09:25:20] 2025-06-04 13:25:03,824 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | INFO     | sufficient remaining disk space (76031197184 B)
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | INFO     | update_server=False
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:25:20] 2025-06-04 13:25:03,833 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:25:20] 2025-06-04 13:25:03,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:25:20] 2025-06-04 13:25:03,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:25:20] 2025-06-04 13:25:03,834 | INFO     | aborting loop
[2025-06-04 09:25:20] 2025-06-04 13:25:03,969 | INFO     | all data control threads have been joined
[2025-06-04 09:25:20] 2025-06-04 13:25:04,068 | INFO     | all job control threads have been joined
[2025-06-04 09:25:20] 2025-06-04 13:25:04,088 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:25:20] 2025-06-04 13:25:04,088 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:25:20] 2025-06-04 13:25:04,088 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:25:20] 2025-06-04 13:25:04,257 | INFO     | all payload control threads have been joined
[2025-06-04 09:25:20] 2025-06-04 13:25:04,307 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:25:20] 2025-06-04 13:25:04,837 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:04,839 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:04,839 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:04,974 | INFO     | [data] control thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,073 | INFO     | [job] control thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,196 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,259 | INFO     | [payload] control thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,742 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,841 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:05,946 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:06,015 | INFO     | [job] validate thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:06,081 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:06,211 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:06,312 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:07,839 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:13,917 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:25:20] 2025-06-04 13:25:14,923 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:25:20] 2025-06-04 13:25:15,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140716406388544)>', '<ExcThread(monitor, started 140715904444160)>']
[2025-06-04 09:25:20] 2025-06-04 13:25:16,143 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:25:20] 2025-06-04 13:25:16,144 | INFO     | [monitor] control thread has ended
[2025-06-04 09:25:20] 2025-06-04 13:25:20,270 | INFO     | all workflow threads have been joined
[2025-06-04 09:25:20] 2025-06-04 13:25:20,270 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:25:20] 2025-06-04 13:25:20,270 | INFO     | traces error code: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:20,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:25:20] 2025-06-04 13:25:20,379 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:25:20] 2025-06-04 13:25:20,380 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:25:20] 2025-06-04 13:25:20,382 [wrapper] pilotpid: 487687
[2025-06-04 09:25:20] 2025-06-04 13:25:20,383 [wrapper] Pilot exit status: 0
[2025-06-04 09:25:20] 2025-06-04 13:25:20,389 [wrapper] pandaids: 6678390320
[2025-06-04 09:25:20] 2025-06-04 13:25:20,416 [wrapper] cleanup supervisor_pilot  641205 487688
[2025-06-04 09:25:20] 2025-06-04 13:25:20,418 [wrapper] Test setup, not cleaning
[2025-06-04 09:25:20] 2025-06-04 13:25:20,419 [wrapper] apfmon messages muted
[2025-06-04 09:25:20] 2025-06-04 13:25:20,420 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:25:20] 2025-06-04 13:25:20,421 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:25:20]  *** Error codes and diagnostics ***
[2025-06-04 09:25:20]     "exeErrorCode": 0,
[2025-06-04 09:25:20]     "exeErrorDiag": "",
[2025-06-04 09:25:20]     "pilotErrorCode": 0,
[2025-06-04 09:25:20]     "pilotErrorDiag": "",
[2025-06-04 09:25:20]  *** Listing of results directory ***
[2025-06-04 09:25:20] total 382664
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:27 queuedata.json
[2025-06-04 09:25:20] -rwx------. 1 boincer umatlas     37140 Jun  4 03:28 runpilot2-wrapper.sh
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:25:20] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:35 run_atlas
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:35 job.xml
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 08:35 EVNT.45006593._002191.pool.root.1
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:35 start_atlas.sh
[2025-06-04 09:25:20] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:35 shared
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 08:35 input.tar.gz
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:35 boinc_lockfile
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 08:35 pandaJob.out
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas    986811 Jun  4 08:35 agis_schedconf.cvmfs.json
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:35 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:25:20] drwx------. 4 boincer umatlas      4096 Jun  4 08:35 pilot3
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas      6855 Jun  4 09:19 init_data.xml
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas        95 Jun  4 09:24 pilot_heartbeat.json
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas 172366268 Jun  4 09:24 HITS.45006595._054771.pool.root.1
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:24 boinc_task_state.xml
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas      1035 Jun  4 09:24 memory_monitor_summary.json
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas    298782 Jun  4 09:24 log.45006595._054771.job.log.tgz.1
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas      7707 Jun  4 09:25 heartbeat.json
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:25 wrapper_checkpoint.txt
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:25 boinc_mmap_file
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas      4425 Jun  4 09:25 pilotlog.txt
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas    312123 Jun  4 09:25 log.45006595._054771.job.log.1
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas       357 Jun  4 09:25 output.list
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:25 runtime_log
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas    634880 Jun  4 09:25 result.tar.gz
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 09:25 runtime_log.err
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas       649 Jun  4 09:25 g5dMDmJjxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLcnKDm6Le27m.diag
[2025-06-04 09:25:20] -rw-r--r--. 1 boincer umatlas     21397 Jun  4 09:25 stderr.txt
[2025-06-04 09:25:20] HITS file was successfully produced:
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas 172366268 Jun  4 09:24 shared/HITS.pool.root.1
[2025-06-04 09:25:20]  *** Contents of shared directory: ***
[2025-06-04 09:25:20] total 378872
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 08:35 ATLAS.root_0
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:35 start_atlas.sh
[2025-06-04 09:25:20] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 08:35 input.tar.gz
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas 172366268 Jun  4 09:24 HITS.pool.root.1
[2025-06-04 09:25:20] -rw-------. 1 boincer umatlas    634880 Jun  4 09:25 result.tar.gz
09:25:21 (484064): run_atlas exited; CPU time 18882.110156
09:25:21 (484064): called boinc_finish(0)

</stderr_txt>
]]>

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