Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
14:07:41 (1958408): wrapper (7.7.26015): starting
14:07:41 (1958408): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 14:07:41] Arguments: --nthreads 12
[2025-06-04 14:07:41] Threads: 12
[2025-06-04 14:07:41] Checking for CVMFS
[2025-06-04 14:07:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 14:07:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 14:07:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 14:07:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 14:07:43] 2.12.7.0 29207 2008 76188 146781 0 187 2032967 4096000 15428 130560 17 26454732 99.999 473789 145 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-04 14:07:43] CVMFS is ok
[2025-06-04 14:07:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 14:07:43] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-04 14:07:43] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-04 14:07:43] Further information can be found at the LHC@home message board.
[2025-06-04 14:07:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 14:07:43] Checking for apptainer binary...
[2025-06-04 14:07:43] apptainer is not installed, using version from CVMFS
[2025-06-04 14:07:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 14:07:43] epyc7v12
[2025-06-04 14:07:43] apptainer works
[2025-06-04 14:07:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 14:07:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 14:07:43] Starting ATLAS job with PandaID=6678449272
[2025-06-04 14:07:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 15:53:49]  *** The last 200 lines of the pilot log: ***
[2025-06-04 15:53:49] 2025-06-04 15:53:34,850 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678449272/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,851 | INFO     | extracted standard info from prmon json
[2025-06-04 15:53:49] 2025-06-04 15:53:34,851 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 15:53:49] 2025-06-04 15:53:34,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 15:53:49] 2025-06-04 15:53:34,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 15:53:49] 2025-06-04 15:53:34,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 15:53:49] 2025-06-04 15:53:34,854 | INFO     | fitting pss+swap vs Time
[2025-06-04 15:53:49] 2025-06-04 15:53:34,854 | INFO     | sum of square deviations: 348769330.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,855 | INFO     | sum of deviations: 23081788170.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,855 | INFO     | mean x: 1749049246.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,855 | INFO     | mean y: 2526440.173076923
[2025-06-04 15:53:49] 2025-06-04 15:53:34,855 | INFO     | -- intersect: -115750725735.4443
[2025-06-04 15:53:49] 2025-06-04 15:53:34,855 | INFO     | intersect: -115750725735.4443
[2025-06-04 15:53:49] 2025-06-04 15:53:34,856 | INFO     | chi2: 2.9169849847605027
[2025-06-04 15:53:49] 2025-06-04 15:53:34,856 | INFO     | sum of square deviations: 300842850.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,856 | INFO     | sum of deviations: 29126260114.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | mean x: 1749049094.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | mean y: 2544734.757575758
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | -- intersect: -169332571137.2003
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | intersect: -169332571137.2003
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | chi2: 2.0677165935384796
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | current chi2=2.0677165935384796 (change=29.114595915266662 %)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,857 | INFO     | sum of square deviations: 257521107.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,858 | INFO     | sum of deviations: 27471283632.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,858 | INFO     | mean x: 1749048941.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,858 | INFO     | mean y: 2538904.3191489363
[2025-06-04 15:53:49] 2025-06-04 15:53:34,858 | INFO     | -- intersect: -186578747673.11557
[2025-06-04 15:53:49] 2025-06-04 15:53:34,858 | INFO     | intersect: -186578747673.11557
[2025-06-04 15:53:49] 2025-06-04 15:53:34,859 | INFO     | chi2: 2.0624156493731522
[2025-06-04 15:53:49] 2025-06-04 15:53:34,859 | INFO     | current chi2=2.0624156493731522 (change=0.2563670563892821 %)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,859 | INFO     | right removable region: 93
[2025-06-04 15:53:49] 2025-06-04 15:53:34,859 | INFO     | sum of square deviations: 300842850.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | sum of deviations: 1012175989.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | mean x: 1749049399.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | mean y: 2595805.737373737
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | -- intersect: -5882024038.951242
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | intersect: -5882024038.951242
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | chi2: 1.026292048956217
[2025-06-04 15:53:49] 2025-06-04 15:53:34,860 | INFO     | current chi2=1.026292048956217 (change=64.81668385960238 %)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,861 | INFO     | sum of square deviations: 257521107.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,861 | INFO     | sum of deviations: -5479822607.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,861 | INFO     | mean x: 1749049551.5
[2025-06-04 15:53:49] 2025-06-04 15:53:34,861 | INFO     | mean y: 2618535.010638298
[2025-06-04 15:53:49] 2025-06-04 15:53:34,861 | INFO     | -- intersect: 37220854224.47713
[2025-06-04 15:53:49] 2025-06-04 15:53:34,862 | INFO     | intersect: 37220854224.47713
[2025-06-04 15:53:49] 2025-06-04 15:53:34,862 | INFO     | chi2: 0.8871627272017029
[2025-06-04 15:53:49] 2025-06-04 15:53:34,862 | INFO     | current chi2=0.8871627272017029 (change=13.556503910949585 %)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,862 | INFO     | left removable region: 20
[2025-06-04 15:53:49] 2025-06-04 15:53:34,862 | INFO     | sum of square deviations: 120605052.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | sum of deviations: 237643555.99999997
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | mean x: 1749049521.0
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | mean y: 2648067.7397260275
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | -- intersect: -3443727858.457268
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | intersect: -3443727858.457268
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | chi2: 0.0004024911793909057
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | -- intersect: -3443727858.457268
[2025-06-04 15:53:49] 2025-06-04 15:53:34,863 | INFO     | current memory leak: 1.97 B/s (using 73 data points, chi2=0.00)
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | ..............................
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . Timing measurements:
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . get job = 0 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . initial setup = 1 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . payload setup = 8 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . stage-in = 0 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,864 | INFO     | . payload execution = 6301 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,865 | INFO     | . stage-out = 0 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,865 | INFO     | . log creation = 0 s
[2025-06-04 15:53:49] 2025-06-04 15:53:34,865 | INFO     | ..............................
[2025-06-04 15:53:49] 2025-06-04 15:53:35,216 | INFO     | 
[2025-06-04 15:53:49] 2025-06-04 15:53:35,216 | INFO     | job summary report
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | --------------------------------------------------
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | PanDA job id: 6678449272
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | task id: 45006595
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | errors: (none)
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | pilot state: finished 
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | transexitcode: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | exeerrorcode: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | exeerrordiag: 
[2025-06-04 15:53:49] 2025-06-04 15:53:35,217 | INFO     | exitcode: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | exitmsg: OK
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | cpuconsumptiontime: 40912 s
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | nevents: 400
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | neventsw: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | pid: 1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | pgrp: 1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | corecount: 12
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | event service: False
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | sizes: {0: 2396462, 1: 2397341, 7: 2397547, 12: 2397575, 6313: 2424181, 6314: 2433168, 6317: 2433352, 6324: 2433522}
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | --------------------------------------------------
[2025-06-04 15:53:49] 2025-06-04 15:53:35,218 | INFO     | 
[2025-06-04 15:53:49] 2025-06-04 15:53:35,219 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-04 15:53:49] 2025-06-04 15:53:35,243 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,243 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,243 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,244 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,245 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 15:53:49] 2025-06-04 15:53:35,246 | INFO     | job 6678449272 has completed (purged errors)
[2025-06-04 15:53:49] 2025-06-04 15:53:35,246 | INFO     | overall cleanup function is called
[2025-06-04 15:53:49] 2025-06-04 15:53:36,253 | INFO     | --- collectZombieJob: --- 10, [1994395]
[2025-06-04 15:53:49] 2025-06-04 15:53:36,254 | INFO     | zombie collector waiting for pid 1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:36,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 15:53:49] 2025-06-04 15:53:36,254 | INFO     | collected zombie processes
[2025-06-04 15:53:49] 2025-06-04 15:53:36,254 | INFO     | will attempt to kill all subprocesses of pid=1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:36,856 | INFO     | process IDs to be killed: [1994395] (in reverse order)
[2025-06-04 15:53:49] 2025-06-04 15:53:37,060 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 15:53:49] 2025-06-04 15:53:37,060 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 15:53:49] 2025-06-04 15:53:37,078 | INFO     | did not find any defunct processes belonging to 1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:37,095 | INFO     | did not find any defunct processes belonging to 1994395
[2025-06-04 15:53:49] 2025-06-04 15:53:37,095 | INFO     | ready for new job
[2025-06-04 15:53:49] 2025-06-04 15:53:37,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 15:53:49] 2025-06-04 15:53:37,097 | INFO     | **************************************
[2025-06-04 15:53:49] 2025-06-04 15:53:37,097 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 15:53:49] 2025-06-04 15:53:37,097 | INFO     | **************************************
[2025-06-04 15:53:49] 2025-06-04 15:53:37,097 | INFO     | 
[2025-06-04 15:53:49] 2025-06-04 15:53:37,127 | INFO     | architecture information:
[2025-06-04 15:53:49] 2025-06-04 15:53:37,128 | INFO     | executing command: cat /etc/os-release
[2025-06-04 15:53:49] 2025-06-04 15:53:37,147 | INFO     | cat /etc/os-release:
[2025-06-04 15:53:49] NAME="CentOS Linux"
[2025-06-04 15:53:49] VERSION="7 (Core)"
[2025-06-04 15:53:49] ID="centos"
[2025-06-04 15:53:49] ID_LIKE="rhel fedora"
[2025-06-04 15:53:49] VERSION_ID="7"
[2025-06-04 15:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 15:53:49] ANSI_COLOR="0;31"
[2025-06-04 15:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 15:53:49] HOME_URL="https://www.centos.org/"
[2025-06-04 15:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 15:53:49] 
[2025-06-04 15:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 15:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 15:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 15:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 15:53:49] 
[2025-06-04 15:53:49] 2025-06-04 15:53:37,147 | INFO     | **************************************
[2025-06-04 15:53:49] 2025-06-04 15:53:37,650 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-04 15:53:49] 2025-06-04 15:53:37,669 | INFO     | sufficient remaining disk space (315781808128 B)
[2025-06-04 15:53:49] 2025-06-04 15:53:37,669 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 15:53:49] 2025-06-04 15:53:37,670 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 15:53:49] 2025-06-04 15:53:37,670 | INFO     | update_server=False
[2025-06-04 15:53:49] 2025-06-04 15:53:37,670 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 15:53:49] 2025-06-04 15:53:37,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:53:49] 2025-06-04 15:53:37,670 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 15:53:49] 2025-06-04 15:53:37,671 | INFO     | aborting loop
[2025-06-04 15:53:49] 2025-06-04 15:53:37,671 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 15:53:49] 2025-06-04 15:53:37,672 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 15:53:49] 2025-06-04 15:53:37,672 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 15:53:49] 2025-06-04 15:53:38,145 | INFO     | all data control threads have been joined
[2025-06-04 15:53:49] 2025-06-04 15:53:38,291 | INFO     | all payload control threads have been joined
[2025-06-04 15:53:49] 2025-06-04 15:53:38,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 15:53:49] 2025-06-04 15:53:38,651 | INFO     | all job control threads have been joined
[2025-06-04 15:53:49] 2025-06-04 15:53:38,674 | INFO     | [job] retrieve thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:38,674 | INFO     | [job] job monitor thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:38,729 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:38,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 15:53:49] 2025-06-04 15:53:39,149 | INFO     | [data] control thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,261 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,293 | INFO     | [payload] control thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,450 | INFO     | [data] copytool_in thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,491 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,657 | INFO     | [job] control thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,661 | INFO     | [payload] failed_post thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,709 | INFO     | [payload] validate_post thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,737 | INFO     | [job] validate thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,849 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:39,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 15:53:49] 2025-06-04 15:53:40,345 | INFO     | [data] copytool_out thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:40,981 | INFO     | [job] queue monitor thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:42,829 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 15:53:49] 2025-06-04 15:53:43,895 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140251871774528)>', '<ExcThread(monitor, started 140251200739072)>']
[2025-06-04 15:53:49] 2025-06-04 15:53:44,701 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 15:53:49] 2025-06-04 15:53:44,703 | INFO     | [monitor] control thread has ended
[2025-06-04 15:53:49] 2025-06-04 15:53:48,909 | INFO     | all workflow threads have been joined
[2025-06-04 15:53:49] 2025-06-04 15:53:48,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 15:53:49] 2025-06-04 15:53:48,909 | INFO     | traces error code: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:48,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 15:53:49] 2025-06-04 15:53:49,053 [wrapper] ==== pilot stdout END ====
[2025-06-04 15:53:49] 2025-06-04 15:53:49,057 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 15:53:49] 2025-06-04 15:53:49,061 [wrapper] pilotpid: 1970208
[2025-06-04 15:53:49] 2025-06-04 15:53:49,064 [wrapper] Pilot exit status: 0
[2025-06-04 15:53:49] 2025-06-04 15:53:49,077 [wrapper] pandaids: 6678449272
[2025-06-04 15:53:49] 2025-06-04 15:53:49,193 [wrapper] cleanup supervisor_pilot 2257216 1970209
[2025-06-04 15:53:49] 2025-06-04 15:53:49,196 [wrapper] Test setup, not cleaning
[2025-06-04 15:53:49] 2025-06-04 15:53:49,200 [wrapper] apfmon messages muted
[2025-06-04 15:53:49] 2025-06-04 15:53:49,204 [wrapper] ==== wrapper stdout END ====
[2025-06-04 15:53:49] 2025-06-04 15:53:49,207 [wrapper] ==== wrapper stderr END ====
[2025-06-04 15:53:49]  *** Error codes and diagnostics ***
[2025-06-04 15:53:49]     "exeErrorCode": 0,
[2025-06-04 15:53:49]     "exeErrorDiag": "",
[2025-06-04 15:53:49]     "pilotErrorCode": 0,
[2025-06-04 15:53:49]     "pilotErrorDiag": "",
[2025-06-04 15:53:49]  *** Listing of results directory ***
[2025-06-04 15:53:49] total 396116
[2025-06-04 15:53:49] -rw-r--r-- 1 boinc boinc    495897 Jun  4 07:34 pilot3.tar.gz
[2025-06-04 15:53:49] -rw-r--r-- 1 boinc boinc      5111 Jun  4 07:40 queuedata.json
[2025-06-04 15:53:49] -rwx------ 1 boinc boinc     37140 Jun  4 07:41 runpilot2-wrapper.sh
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc       100 Jun  4 14:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 15:53:49] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 14:07 run_atlas
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc       105 Jun  4 14:07 job.xml
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc      6950 Jun  4 14:07 init_data.xml
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc 218194527 Jun  4 14:07 EVNT.45006593._000631.pool.root.1
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:07 start_atlas.sh
[2025-06-04 15:53:49] drwxrwx--x 2 boinc boinc      4096 Jun  4 14:07 shared
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc    508885 Jun  4 14:07 input.tar.gz
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc         0 Jun  4 14:07 boinc_lockfile
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc      2524 Jun  4 14:07 pandaJob.out
[2025-06-04 15:53:49] -rw------- 1 boinc boinc    986819 Jun  4 14:07 agis_schedconf.cvmfs.json
[2025-06-04 15:53:49] -rw------- 1 boinc boinc   1598969 Jun  4 14:07 agis_ddmendpoints.agis.ALL.json
[2025-06-04 15:53:49] drwx------ 4 boinc boinc      4096 Jun  4 14:07 pilot3
[2025-06-04 15:53:49] -rw------- 1 boinc boinc 181728281 Jun  4 15:52 HITS.45006595._055321.pool.root.1
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc       530 Jun  4 15:52 boinc_task_state.xml
[2025-06-04 15:53:49] -rw------- 1 boinc boinc        95 Jun  4 15:53 pilot_heartbeat.json
[2025-06-04 15:53:49] -rw------- 1 boinc boinc      1023 Jun  4 15:53 memory_monitor_summary.json
[2025-06-04 15:53:49] -rw------- 1 boinc boinc    376199 Jun  4 15:53 log.45006595._055321.job.log.tgz.1
[2025-06-04 15:53:49] -rw------- 1 boinc boinc      7647 Jun  4 15:53 heartbeat.json
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc        27 Jun  4 15:53 wrapper_checkpoint.txt
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc      8192 Jun  4 15:53 boinc_mmap_file
[2025-06-04 15:53:49] -rw------- 1 boinc boinc      4500 Jun  4 15:53 pilotlog.txt
[2025-06-04 15:53:49] -rw------- 1 boinc boinc    555178 Jun  4 15:53 log.45006595._055321.job.log.1
[2025-06-04 15:53:49] -rw------- 1 boinc boinc       357 Jun  4 15:53 output.list
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc       620 Jun  4 15:53 runtime_log
[2025-06-04 15:53:49] -rw------- 1 boinc boinc    952320 Jun  4 15:53 result.tar.gz
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc      8963 Jun  4 15:53 runtime_log.err
[2025-06-04 15:53:49] -rw------- 1 boinc boinc       651 Jun  4 15:53 hZbNDmMvxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmihnKDm63Oh6n.diag
[2025-06-04 15:53:49] -rw-rw-r-- 1 boinc boinc     21019 Jun  4 15:53 stderr.txt
[2025-06-04 15:53:49] HITS file was successfully produced:
[2025-06-04 15:53:49] -rw------- 1 boinc boinc 181728281 Jun  4 15:52 shared/HITS.pool.root.1
[2025-06-04 15:53:49]  *** Contents of shared directory: ***
[2025-06-04 15:53:49] total 392012
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc 218194527 Jun  4 14:07 ATLAS.root_0
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc     15093 Jun  4 14:07 start_atlas.sh
[2025-06-04 15:53:49] -rw-r--r-- 2 boinc boinc    508885 Jun  4 14:07 input.tar.gz
[2025-06-04 15:53:49] -rw------- 1 boinc boinc 181728281 Jun  4 15:52 HITS.pool.root.1
[2025-06-04 15:53:49] -rw------- 1 boinc boinc    952320 Jun  4 15:53 result.tar.gz
15:53:50 (1958408): run_atlas exited; CPU time 41223.113718
15:53:50 (1958408): called boinc_finish(0)

</stderr_txt>
]]>

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