Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:42:05 (1387820): wrapper (7.7.26015): starting
02:42:05 (1387820): wrapper: running run_atlas (--nthreads 6)
[2025-06-05 02:42:05] Arguments: --nthreads 6
[2025-06-05 02:42:05] Threads: 6
[2025-06-05 02:42:05] Checking for CVMFS
[2025-06-05 02:42:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 02:42:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 02:42:06] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 02:42:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 02:42:06] 2.12.7.0 917718 1001 76804 146789 0 56 17069810 20971520 409 130560 0 1284588 99.993 306736 104 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-05 02:42:06] CVMFS is ok
[2025-06-05 02:42:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 02:42:06] Checking for apptainer binary...
[2025-06-05 02:42:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 02:42:06] Running /usr/bin/apptainer --version
[2025-06-05 02:42:06] apptainer version 1.4.0-1.el9
[2025-06-05 02:42:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 02:42:07] testio005
[2025-06-05 02:42:07] apptainer works
[2025-06-05 02:42:07] Set ATHENA_PROC_NUMBER=6
[2025-06-05 02:42:07] Set ATHENA_CORE_NUMBER=6
[2025-06-05 02:42:07] Starting ATLAS job with PandaID=6678483529
[2025-06-05 02:42:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:32:01]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:32:01] 2025-06-04 19:31:48,447 | INFO     | mean y: 2396352.1386138615
[2025-06-05 04:32:01] 2025-06-04 19:31:48,447 | INFO     | -- intersect: -88596451072.46996
[2025-06-05 04:32:01] 2025-06-04 19:31:48,447 | INFO     | intersect: -88596451072.46996
[2025-06-05 04:32:01] 2025-06-04 19:31:48,447 | INFO     | chi2: 1.4086736317173618
[2025-06-05 04:32:01] 2025-06-04 19:31:48,447 | INFO     | current chi2=1.4086736317173618 (change=63.45256382347358 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | sum of square deviations: 274312120.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | sum of deviations: -2026301904.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | mean x: 1749062472.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | mean y: 2457907.3125
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | -- intersect: 12922516336.526993
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | intersect: 12922516336.526993
[2025-06-05 04:32:01] 2025-06-04 19:31:48,448 | INFO     | chi2: 0.10875883625829744
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | current chi2=0.10875883625829744 (change=92.27934463955957 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | sum of square deviations: 233641590.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | sum of deviations: -3999344769.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | mean x: 1749062625.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | mean y: 2464912.0659340657
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | -- intersect: 29941930997.479744
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | intersect: 29941930997.479744
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | chi2: 0.03299457047603175
[2025-06-05 04:32:01] 2025-06-04 19:31:48,449 | INFO     | current chi2=0.03299457047603175 (change=69.66263008030805 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | sum of square deviations: 197203697.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | sum of deviations: -1941928259.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | mean x: 1749062777.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | mean y: 2456284.4534883723
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | -- intersect: 17226040214.804543
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | intersect: 17226040214.804543
[2025-06-05 04:32:01] 2025-06-04 19:31:48,450 | INFO     | chi2: 0.022575490170989074
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | current chi2=0.022575490170989074 (change=31.578166209532593 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | sum of square deviations: 164765880.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | sum of deviations: 296356666.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | mean x: 1749062930.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | mean y: 2445742.6172839506
[2025-06-05 04:32:01] 2025-06-04 19:31:48,451 | INFO     | -- intersect: -3143511773.3380303
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | intersect: -3143511773.3380303
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | chi2: 0.00039452853769627065
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | current chi2=0.00039452853769627065 (change=98.25240322709243 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | sum of square deviations: 136095575.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | sum of deviations: 147538229.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,452 | INFO     | mean x: 1749063082.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | mean y: 2446533.75
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | -- intersect: -1893674412.6941621
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | intersect: -1893674412.6941621
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | chi2: 0.0003261887867200084
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | current chi2=0.0003261887867200084 (change=17.32187774687008 %)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | left removable region: 60
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | sum of square deviations: 19832930.0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,453 | INFO     | sum of deviations: -83980377.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | mean x: 1749063814.5
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | mean y: 2449092.725
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | -- intersect: 7408668920.723182
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | intersect: 7408668920.723182
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | chi2: 5.200171260865229e-05
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | -- intersect: 7408668920.723182
[2025-06-05 04:32:01] 2025-06-04 19:31:48,454 | INFO     | current memory leak: -4.23 B/s (using 40 data points, chi2=0.00)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | ..............................
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . Timing measurements:
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . get job = 0 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . initial setup = 10 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . payload setup = 4 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . stage-in = 0 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . payload execution = 6458 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . stage-out = 0 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | . log creation = 0 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,455 | INFO     | ..............................
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | 
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | job summary report
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | --------------------------------------------------
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | PanDA job id: 6678483529
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | task id: 45006595
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | errors: (none)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | pilot state: finished 
[2025-06-05 04:32:01] 2025-06-04 19:31:48,927 | INFO     | transexitcode: 0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | exeerrorcode: 0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | exeerrordiag: 
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | exitcode: 0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | exitmsg: OK
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | cpuconsumptiontime: 33368 s
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | nevents: 400
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | neventsw: 0
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | pid: 1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | pgrp: 1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | corecount: 6
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | event service: False
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | sizes: {0: 2397286, 4: 2397492, 11: 2397520, 6466: 2424419, 6467: 2433416, 6551: 2433530}
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | --------------------------------------------------
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | 
[2025-06-05 04:32:01] 2025-06-04 19:31:48,928 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | job 6678483529 has completed (purged errors)
[2025-06-05 04:32:01] 2025-06-04 19:31:48,945 | INFO     | overall cleanup function is called
[2025-06-05 04:32:01] 2025-06-04 19:31:49,952 | INFO     | --- collectZombieJob: --- 10, [1400246]
[2025-06-05 04:32:01] 2025-06-04 19:31:49,952 | INFO     | zombie collector waiting for pid 1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:49,952 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:32:01] 2025-06-04 19:31:49,952 | INFO     | collected zombie processes
[2025-06-05 04:32:01] 2025-06-04 19:31:49,953 | INFO     | will attempt to kill all subprocesses of pid=1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:50,040 | INFO     | process IDs to be killed: [1400246] (in reverse order)
[2025-06-05 04:32:01] 2025-06-04 19:31:50,088 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:32:01] 2025-06-04 19:31:50,089 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:32:01] 2025-06-04 19:31:50,092 | INFO     | did not find any defunct processes belonging to 1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:50,095 | INFO     | did not find any defunct processes belonging to 1400246
[2025-06-05 04:32:01] 2025-06-04 19:31:50,095 | INFO     | ready for new job
[2025-06-05 04:32:01] 2025-06-04 19:31:50,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:32:01] 2025-06-04 19:31:50,097 | INFO     | **************************************
[2025-06-05 04:32:01] 2025-06-04 19:31:50,097 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:32:01] 2025-06-04 19:31:50,097 | INFO     | **************************************
[2025-06-05 04:32:01] 2025-06-04 19:31:50,097 | INFO     | 
[2025-06-05 04:32:01] 2025-06-04 19:31:50,098 | INFO     | architecture information:
[2025-06-05 04:32:01] 2025-06-04 19:31:50,098 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:32:01] 2025-06-04 19:31:50,111 | INFO     | cat /etc/os-release:
[2025-06-05 04:32:01] NAME="CentOS Linux"
[2025-06-05 04:32:01] VERSION="7 (Core)"
[2025-06-05 04:32:01] ID="centos"
[2025-06-05 04:32:01] ID_LIKE="rhel fedora"
[2025-06-05 04:32:01] VERSION_ID="7"
[2025-06-05 04:32:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:32:01] ANSI_COLOR="0;31"
[2025-06-05 04:32:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:32:01] HOME_URL="https://www.centos.org/"
[2025-06-05 04:32:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:32:01] 
[2025-06-05 04:32:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:32:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:32:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:32:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:32:01] 
[2025-06-05 04:32:01] 2025-06-04 19:31:50,112 | INFO     | **************************************
[2025-06-05 04:32:01] 2025-06-04 19:31:50,352 | INFO     | PID=1391551 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 04:32:01] 2025-06-04 19:31:50,352 | INFO     | .. there are 2 such processes running
[2025-06-05 04:32:01] 2025-06-04 19:31:50,615 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-05 04:32:01] 2025-06-04 19:31:50,636 | INFO     | sufficient remaining disk space (107836604416 B)
[2025-06-05 04:32:01] 2025-06-04 19:31:50,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:32:01] 2025-06-04 19:31:50,637 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:32:01] 2025-06-04 19:31:50,637 | INFO     | update_server=False
[2025-06-05 04:32:01] 2025-06-04 19:31:50,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:32:01] 2025-06-04 19:31:50,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:32:01] 2025-06-04 19:31:50,637 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 04:32:01] 2025-06-04 19:31:50,638 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:32:01] 2025-06-04 19:31:50,638 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:32:01] 2025-06-04 19:31:50,638 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:32:01] 2025-06-04 19:31:50,980 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:32:01] 2025-06-04 19:31:50,980 | INFO     | aborting loop
[2025-06-05 04:32:01] 2025-06-04 19:31:50,983 | INFO     | all data control threads have been joined
[2025-06-05 04:32:01] 2025-06-04 19:31:51,642 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:51,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:32:01] 2025-06-04 19:31:51,649 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:51,714 | INFO     | all payload control threads have been joined
[2025-06-05 04:32:01] 2025-06-04 19:31:51,986 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:51,988 | INFO     | [data] control thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,123 | INFO     | [job] validate thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,182 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,314 | INFO     | all job control threads have been joined
[2025-06-05 04:32:01] 2025-06-04 19:31:52,363 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,462 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,631 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,643 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,666 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,719 | INFO     | [payload] control thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:52,897 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:53,319 | INFO     | [job] control thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:53,535 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:32:01] 2025-06-04 19:31:54,540 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:55,653 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:32:01] 2025-06-04 19:31:55,934 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432112887616)>', '<ExcThread(monitor, started 140431396431616)>']
[2025-06-05 04:32:01] 2025-06-04 19:31:56,667 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:32:01] 2025-06-04 19:31:56,668 | INFO     | [monitor] control thread has ended
[2025-06-05 04:32:01] 2025-06-04 19:32:00,959 | INFO     | all workflow threads have been joined
[2025-06-05 04:32:01] 2025-06-04 19:32:00,959 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:32:01] 2025-06-04 19:32:00,959 | INFO     | traces error code: 0
[2025-06-05 04:32:01] 2025-06-04 19:32:00,960 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:32:01] 2025-06-04 19:32:01,132 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:32:01] 2025-06-04 19:32:01,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:32:01] 2025-06-04 19:32:01,136 [wrapper] pilotpid: 1391551
[2025-06-05 04:32:01] 2025-06-04 19:32:01,138 [wrapper] Pilot exit status: 0
[2025-06-05 04:32:01] 2025-06-04 19:32:01,148 [wrapper] pandaids: 6678483529
[2025-06-05 04:32:01] 2025-06-04 19:32:01,177 [wrapper] cleanup supervisor_pilot 1437702 1391552
[2025-06-05 04:32:01] 2025-06-04 19:32:01,180 [wrapper] Test setup, not cleaning
[2025-06-05 04:32:01] 2025-06-04 19:32:01,183 [wrapper] apfmon messages muted
[2025-06-05 04:32:01] 2025-06-04 19:32:01,186 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:32:01] 2025-06-04 19:32:01,189 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:32:01]  *** Error codes and diagnostics ***
[2025-06-05 04:32:01]     "exeErrorCode": 0,
[2025-06-05 04:32:01]     "exeErrorDiag": "",
[2025-06-05 04:32:01]     "pilotErrorCode": 0,
[2025-06-05 04:32:01]     "pilotErrorDiag": "",
[2025-06-05 04:32:01]  *** Listing of results directory ***
[2025-06-05 04:32:01] total 391220
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc    495897 Jun  4 16:34 pilot3.tar.gz
[2025-06-05 04:32:01] -rwx------. 1 boinc boinc     37140 Jun  4 16:46 runpilot2-wrapper.sh
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc      5111 Jun  4 16:46 queuedata.json
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc       100 Jun  5 02:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:32:01] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 02:42 run_atlas
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc       105 Jun  5 02:42 job.xml
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc      9362 Jun  5 02:42 init_data.xml
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc 215978505 Jun  5 02:42 EVNT.45006593._000348.pool.root.1
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:42 start_atlas.sh
[2025-06-05 04:32:01] drwxrwx--x. 2 boinc boinc        68 Jun  5 02:42 shared
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc    508886 Jun  5 02:42 input.tar.gz
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc         0 Jun  5 02:42 boinc_lockfile
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc      2522 Jun  5 02:42 pandaJob.out
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc    990984 Jun  5 02:42 agis_schedconf.cvmfs.json
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc   1598969 Jun  5 02:42 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:32:01] drwx------. 4 boinc boinc      4096 Jun  5 02:42 pilot3
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc 178961394 Jun  5 04:29 HITS.45006595._055363.pool.root.1
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc       529 Jun  5 04:30 boinc_task_state.xml
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc      1014 Jun  5 04:30 memory_monitor_summary.json
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc    296959 Jun  5 04:30 log.45006595._055363.job.log.tgz.1
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc        95 Jun  5 04:31 pilot_heartbeat.json
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:31 boinc_mmap_file
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc        27 Jun  5 04:31 wrapper_checkpoint.txt
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc      7660 Jun  5 04:31 heartbeat.json
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc      4871 Jun  5 04:32 pilotlog.txt
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc    623217 Jun  5 04:32 log.45006595._055363.job.log.1
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc       357 Jun  5 04:32 output.list
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:32 runtime_log
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc    942080 Jun  5 04:32 result.tar.gz
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc      8617 Jun  5 04:32 runtime_log.err
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc       644 Jun  5 04:32 KvYNDmG0xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYinKDmQHhs7m.diag
[2025-06-05 04:32:01] -rw-r--r--. 1 boinc boinc     20568 Jun  5 04:32 stderr.txt
[2025-06-05 04:32:01] HITS file was successfully produced:
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc 178961394 Jun  5 04:29 shared/HITS.pool.root.1
[2025-06-05 04:32:01]  *** Contents of shared directory: ***
[2025-06-05 04:32:01] total 387124
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc 215978505 Jun  5 02:42 ATLAS.root_0
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc     15093 Jun  5 02:42 start_atlas.sh
[2025-06-05 04:32:01] -rw-r--r--. 2 boinc boinc    508886 Jun  5 02:42 input.tar.gz
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc 178961394 Jun  5 04:29 HITS.pool.root.1
[2025-06-05 04:32:01] -rw-------. 1 boinc boinc    942080 Jun  5 04:32 result.tar.gz
04:32:02 (1387820): run_atlas exited; CPU time 33438.229540
04:32:02 (1387820): called boinc_finish(0)

</stderr_txt>
]]>

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