Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:59:11 (899445): wrapper (7.7.26015): starting
08:59:11 (899445): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:59:11] Arguments: --nthreads 8
[2025-06-04 08:59:11] Threads: 8
[2025-06-04 08:59:11] Checking for CVMFS
[2025-06-04 08:59:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:59:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:59:12] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:59:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:59:12] 2.12.6.0 267692 24502 141884 146780 1 630 24077401 40960001 28777 16776704 1 315018127 99.790 173108846 36871 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:59:12] CVMFS is ok
[2025-06-04 08:59:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:59:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:59:12] Further information can be found at the LHC@home message board.
[2025-06-04 08:59:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:59:12] Checking for apptainer binary...
[2025-06-04 08:59:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:59:12] Running /usr/bin/apptainer --version
[2025-06-04 08:59:12] apptainer version 1.4.1-1.el9
[2025-06-04 08:59:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:59:12] c8-16-1.aglt2.org
[2025-06-04 08:59:12] apptainer works
[2025-06-04 08:59:12] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:59:12] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:59:12] Starting ATLAS job with PandaID=6678616540
[2025-06-04 08:59:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:49:13]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:49:13]  filetype=log
[2025-06-04 09:49:13]  guid=1d071cf7-004b-4baf-9fb5-5508c54c92b5
[2025-06-04 09:49:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 09:49:13]  is_altstaged=None
[2025-06-04 09:49:13]  is_tar=False
[2025-06-04 09:49:13]  lfn=log.45006595._055458.job.log.tgz.1
[2025-06-04 09:49:13]  mtime=0
[2025-06-04 09:49:13]  protocol_id=None
[2025-06-04 09:49:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:49:13]  replicas=None
[2025-06-04 09:49:13]  scope=mc23_13p6TeV
[2025-06-04 09:49:13]  status=None
[2025-06-04 09:49:13]  status_code=0
[2025-06-04 09:49:13]  storage_token=
[2025-06-04 09:49:13]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6678616540/log.45006595._055458.job.log.tgz.1
[2025-06-04 09:49:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/49/log.45006595._055458.job.log.tgz.1
[2025-06-04 09:49:13]  workdir=None
[2025-06-04 09:49:13] ]
[2025-06-04 09:49:13] 2025-06-04 13:48:47,063 | INFO     | transferring file log.45006595._055458.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6678616540/log.45006595._055458.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:49:13] 2025-06-04 13:48:47,063 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6678616540/log.45006595._055458.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._055458.job
[2025-06-04 09:49:13] 2025-06-04 13:48:47,081 | INFO     | adding to output.list: log.45006595._055458.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3b/49/log.45006595._055458.job.log.tg
[2025-06-04 09:49:13] 2025-06-04 13:48:47,082 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:49:13] 2025-06-04 13:48:47,082 | INFO     | summary of transferred files:
[2025-06-04 09:49:13] 2025-06-04 13:48:47,082 | INFO     |  -- lfn=log.45006595._055458.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:49:13] 2025-06-04 13:48:47,082 | INFO     | stage-out finished correctly
[2025-06-04 09:49:13] 2025-06-04 13:48:47,591 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:49:13] 2025-06-04 13:48:48,089 | INFO     | monitor loop #220: job 0:6678616540 is in state 'finished'
[2025-06-04 09:49:13] 2025-06-04 13:48:48,089 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:13] 2025-06-04 13:48:48,787 | INFO     | job 6678616540 has state=finished
[2025-06-04 09:49:13] 2025-06-04 13:48:48,787 | INFO     | preparing for final server update for job 6678616540 in state='finished'
[2025-06-04 09:49:13] 2025-06-04 13:48:48,867 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 09:49:13] 2025-06-04 13:48:48,868 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:49:13] 2025-06-04 13:48:48,868 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:49:13] 2025-06-04 13:48:48,868 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:49:13] 2025-06-04 13:48:48,868 | INFO     | job 6678616540 has finished - writing final server update
[2025-06-04 09:49:13] 2025-06-04 13:48:48,868 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:49:13] 2025-06-04 13:48:48,887 | INFO     | executing command: lscpu
[2025-06-04 09:49:13] 2025-06-04 13:48:48,971 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:49:13] 2025-06-04 13:48:50,592 | INFO     | monitor loop #221: job 0:6678616540 is in state 'finished'
[2025-06-04 09:49:13] 2025-06-04 13:48:50,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,743 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:49:13] 2025-06-04 13:48:52,744 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6678616540/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,744 | INFO     | extracted standard info from prmon json
[2025-06-04 09:49:13] 2025-06-04 13:48:52,744 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:49:13] 2025-06-04 13:48:52,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:49:13] 2025-06-04 13:48:52,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:49:13] 2025-06-04 13:48:52,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:49:13] 2025-06-04 13:48:52,745 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | sum of square deviations: 22960430.5
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | sum of deviations: 4025494828.4999995
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | mean x: 1749043543.5
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | mean y: 2407266.1666666665
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | -- intersect: -306645403156.2278
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | intersect: -306645403156.2278
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | chi2: 0.715025419873564
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | -- intersect: -306645403156.2278
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | current memory leak: 175.32 B/s (using 42 data points, chi2=0.72)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | ..............................
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | . Timing measurements:
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | . get job = 0 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,746 | INFO     | . initial setup = 2 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | . payload setup = 6 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | . stage-in = 0 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | . payload execution = 2939 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | . stage-out = 0 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | . log creation = 0 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,747 | INFO     | ..............................
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | 
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | job summary report
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | --------------------------------------------------
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | PanDA job id: 6678616540
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | task id: 45006595
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | errors: (none)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | pilot state: finished 
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | transexitcode: 0
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | exeerrorcode: 0
[2025-06-04 09:49:13] 2025-06-04 13:48:52,801 | INFO     | exeerrordiag: 
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | exitcode: 0
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | exitmsg: OK
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | cpuconsumptiontime: 19189 s
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | nevents: 400
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | neventsw: 0
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | pid: 911774
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | pgrp: 911774
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | corecount: 8
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | event service: False
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | sizes: {0: 2397059, 1: 2397314, 5: 2397520, 11: 2397576, 2949: 2422906, 2950: 2432030, 2951: 2432030, 2956: 2432200}
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | --------------------------------------------------
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | 
[2025-06-04 09:49:13] 2025-06-04 13:48:52,802 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-04 09:49:13] 2025-06-04 13:48:52,818 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,818 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | job 6678616540 has completed (purged errors)
[2025-06-04 09:49:13] 2025-06-04 13:48:52,819 | INFO     | overall cleanup function is called
[2025-06-04 09:49:13] 2025-06-04 13:48:53,826 | INFO     | --- collectZombieJob: --- 10, [911774]
[2025-06-04 09:49:13] 2025-06-04 13:48:53,827 | INFO     | zombie collector waiting for pid 911774
[2025-06-04 09:49:13] 2025-06-04 13:48:53,827 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:49:13] 2025-06-04 13:48:53,827 | INFO     | collected zombie processes
[2025-06-04 09:49:13] 2025-06-04 13:48:53,827 | INFO     | will attempt to kill all subprocesses of pid=911774
[2025-06-04 09:49:13] 2025-06-04 13:48:54,233 | INFO     | process IDs to be killed: [911774] (in reverse order)
[2025-06-04 09:49:13] 2025-06-04 13:48:54,382 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:49:13] 2025-06-04 13:48:54,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:49:13] 2025-06-04 13:48:54,405 | INFO     | did not find any defunct processes belonging to 911774
[2025-06-04 09:49:13] 2025-06-04 13:48:54,428 | INFO     | did not find any defunct processes belonging to 911774
[2025-06-04 09:49:13] 2025-06-04 13:48:54,429 | INFO     | ready for new job
[2025-06-04 09:49:13] 2025-06-04 13:48:54,429 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:49:13] 2025-06-04 13:48:54,430 | INFO     | **************************************
[2025-06-04 09:49:13] 2025-06-04 13:48:54,430 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:49:13] 2025-06-04 13:48:54,430 | INFO     | **************************************
[2025-06-04 09:49:13] 2025-06-04 13:48:54,430 | INFO     | 
[2025-06-04 09:49:13] 2025-06-04 13:48:54,447 | INFO     | architecture information:
[2025-06-04 09:49:13] 2025-06-04 13:48:54,447 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:49:13] 2025-06-04 13:48:54,461 | INFO     | cat /etc/os-release:
[2025-06-04 09:49:13] NAME="CentOS Linux"
[2025-06-04 09:49:13] VERSION="7 (Core)"
[2025-06-04 09:49:13] ID="centos"
[2025-06-04 09:49:13] ID_LIKE="rhel fedora"
[2025-06-04 09:49:13] VERSION_ID="7"
[2025-06-04 09:49:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:49:13] ANSI_COLOR="0;31"
[2025-06-04 09:49:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:49:13] HOME_URL="https://www.centos.org/"
[2025-06-04 09:49:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:49:13] 
[2025-06-04 09:49:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:49:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:49:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:49:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:49:13] 
[2025-06-04 09:49:13] 2025-06-04 13:48:54,461 | INFO     | **************************************
[2025-06-04 09:49:13] 2025-06-04 13:48:54,962 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-04 09:49:13] 2025-06-04 13:48:54,977 | INFO     | sufficient remaining disk space (172013649920 B)
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | INFO     | update_server=False
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:13] 2025-06-04 13:48:54,978 | INFO     | aborting loop
[2025-06-04 09:49:13] 2025-06-04 13:48:55,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:49:13] 2025-06-04 13:48:55,256 | INFO     | all data control threads have been joined
[2025-06-04 09:49:13] 2025-06-04 13:48:55,736 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:49:13] 2025-06-04 13:48:55,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:49:13] 2025-06-04 13:48:55,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:49:13] 2025-06-04 13:48:55,844 | INFO     | all job control threads have been joined
[2025-06-04 09:49:13] 2025-06-04 13:48:55,983 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:55,984 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,260 | INFO     | [data] control thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,425 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,438 | INFO     | all payload control threads have been joined
[2025-06-04 09:49:13] 2025-06-04 13:48:56,523 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,719 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,847 | INFO     | [job] control thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,900 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:56,917 | INFO     | [job] validate thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:57,079 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:57,092 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:57,155 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:57,443 | INFO     | [payload] control thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:48:57,811 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:49:13] 2025-06-04 13:48:58,148 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:49:13] 2025-06-04 13:48:58,817 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:49:02,154 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:49:05,463 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:49:13] 2025-06-04 13:49:06,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:49:13] 2025-06-04 13:49:08,018 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140540737357632)>', '<ExcThread(monitor, started 140540079220480)>']
[2025-06-04 09:49:13] 2025-06-04 13:49:08,803 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:49:13] 2025-06-04 13:49:08,804 | INFO     | [monitor] control thread has ended
[2025-06-04 09:49:13] 2025-06-04 13:49:13,043 | INFO     | all workflow threads have been joined
[2025-06-04 09:49:13] 2025-06-04 13:49:13,044 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:49:13] 2025-06-04 13:49:13,044 | INFO     | traces error code: 0
[2025-06-04 09:49:13] 2025-06-04 13:49:13,044 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:49:13] 2025-06-04 13:49:13,155 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:49:13] 2025-06-04 13:49:13,159 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:49:13] 2025-06-04 13:49:13,162 [wrapper] pilotpid: 904576
[2025-06-04 09:49:13] 2025-06-04 13:49:13,165 [wrapper] Pilot exit status: 0
[2025-06-04 09:49:13] 2025-06-04 13:49:13,185 [wrapper] pandaids: 6678616540
[2025-06-04 09:49:13] 2025-06-04 13:49:13,304 [wrapper] cleanup supervisor_pilot 1508988 904577
[2025-06-04 09:49:13] 2025-06-04 13:49:13,307 [wrapper] Test setup, not cleaning
[2025-06-04 09:49:13] 2025-06-04 13:49:13,310 [wrapper] apfmon messages muted
[2025-06-04 09:49:13] 2025-06-04 13:49:13,313 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:49:13] 2025-06-04 13:49:13,316 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:49:13]  *** Error codes and diagnostics ***
[2025-06-04 09:49:13]     "exeErrorCode": 0,
[2025-06-04 09:49:13]     "exeErrorDiag": "",
[2025-06-04 09:49:13]     "pilotErrorCode": 0,
[2025-06-04 09:49:13]     "pilotErrorDiag": "",
[2025-06-04 09:49:13]  *** Listing of results directory ***
[2025-06-04 09:49:13] total 394328
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:34 pilot3.tar.gz
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:46 queuedata.json
[2025-06-04 09:49:13] -rwx------. 1 boincer umatlas     37140 Jun  4 03:47 runpilot2-wrapper.sh
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:49:13] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:59 run_atlas
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:59 job.xml
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas 219244144 Jun  4 08:59 EVNT.45006593._000146.pool.root.1
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:59 start_atlas.sh
[2025-06-04 09:49:13] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:59 shared
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas    508888 Jun  4 08:59 input.tar.gz
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:59 boinc_lockfile
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas      2522 Jun  4 08:59 pandaJob.out
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas    986811 Jun  4 08:59 agis_schedconf.cvmfs.json
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:59 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:49:13] drwx------. 4 boincer umatlas      4096 Jun  4 08:59 pilot3
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas      7161 Jun  4 09:47 init_data.xml
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas 179507943 Jun  4 09:48 HITS.45006595._055458.pool.root.1
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas        95 Jun  4 09:48 pilot_heartbeat.json
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:48 boinc_task_state.xml
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas      1041 Jun  4 09:48 memory_monitor_summary.json
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas    290904 Jun  4 09:48 log.45006595._055458.job.log.tgz.1
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas      7692 Jun  4 09:48 heartbeat.json
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:49 boinc_mmap_file
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:49 wrapper_checkpoint.txt
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas      4426 Jun  4 09:49 pilotlog.txt
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas    310780 Jun  4 09:49 log.45006595._055458.job.log.1
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas       357 Jun  4 09:49 output.list
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:49 runtime_log
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas    624640 Jun  4 09:49 result.tar.gz
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas       653 Jun  4 09:49 YxSMDmO1xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3jnKDmDClxAn.diag
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 09:49 runtime_log.err
[2025-06-04 09:49:13] -rw-r--r--. 1 boincer umatlas     21187 Jun  4 09:49 stderr.txt
[2025-06-04 09:49:13] HITS file was successfully produced:
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas 179507943 Jun  4 09:48 shared/HITS.pool.root.1
[2025-06-04 09:49:13]  *** Contents of shared directory: ***
[2025-06-04 09:49:13] total 390544
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas 219244144 Jun  4 08:59 ATLAS.root_0
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:59 start_atlas.sh
[2025-06-04 09:49:13] -rw-r--r--. 2 boincer umatlas    508888 Jun  4 08:59 input.tar.gz
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas 179507943 Jun  4 09:48 HITS.pool.root.1
[2025-06-04 09:49:13] -rw-------. 1 boincer umatlas    624640 Jun  4 09:49 result.tar.gz
09:49:14 (899445): run_atlas exited; CPU time 19259.110799
09:49:14 (899445): called boinc_finish(0)

</stderr_txt>
]]>

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