Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 22:08:02 (17084): Detected: vboxwrapper 26206
2025-06-04 22:08:02 (17084): Detected: BOINC client v8.0.4
2025-06-04 22:08:03 (17084): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 22:08:03 (17084): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 22:08:04 (17084): Create VM. (boinc_ee90d2281afec109, slot#34)
2025-06-04 22:08:04 (17084): Setting Memory Size for VM. (4800MB)
2025-06-04 22:08:04 (17084): Setting CPU Count for VM. (8)
2025-06-04 22:08:05 (17084): Setting Chipset Options for VM.
2025-06-04 22:08:05 (17084): Setting Graphics Controller Options for VM.
2025-06-04 22:08:05 (17084): Setting Boot Options for VM.
2025-06-04 22:08:05 (17084): Setting Network Configuration for NAT.
2025-06-04 22:08:06 (17084): Enabling VM Network Access.
2025-06-04 22:08:06 (17084): Disabling USB Support for VM.
2025-06-04 22:08:06 (17084): Disabling COM Port Support for VM.
2025-06-04 22:08:06 (17084): Disabling LPT Port Support for VM.
2025-06-04 22:08:07 (17084): Disabling Audio Support for VM.
2025-06-04 22:08:07 (17084): Disabling Clipboard Support for VM.
2025-06-04 22:08:07 (17084): Disabling Drag and Drop Support for VM.
2025-06-04 22:08:08 (17084): Adding storage controller(s) to VM.
2025-06-04 22:08:08 (17084): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 22:08:08 (17084): Adding VirtualBox Guest Additions to VM.
2025-06-04 22:08:09 (17084): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 22:08:09 (17084): forwarding host port 58155 to guest port 80
2025-06-04 22:08:09 (17084): Enabling remote desktop for VM.
2025-06-04 22:08:09 (17084): Required extension pack not installed, remote desktop not enabled.
2025-06-04 22:08:09 (17084): Enabling shared directory for VM.
2025-06-04 22:08:10 (17084): Starting VM using VBoxManage interface. (boinc_ee90d2281afec109, slot#34)
2025-06-04 22:08:17 (17084): Successfully started VM. (PID = '11208')
2025-06-04 22:08:17 (17084): Reporting VM Process ID to BOINC.
2025-06-04 22:08:17 (17084): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 22:08:17 (17084): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 22:08:17 (17084): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 22:08:17 (17084): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 22:08:17 (17084): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 22:08:17 (17084): Detected: Web Application Enabled (http://localhost:58155)
2025-06-04 22:08:17 (17084): Preference change detected
2025-06-04 22:08:17 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 22:08:17 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 22:08:19 (17084): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 22:08:19 (17084): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 22:08:22 (17084): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 22:08:22 (17084): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 22:08:22 (17084): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 22:08:29 (17084): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 22:08:29 (17084): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 22:08:36 (17084): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000183 main     Log opened 2025-06-04T22:08:34.635932000Z
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000288 main     OS Product: Linux
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000316 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000338 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000360 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000361 main     Process ID: 1372
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.000362 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 22:08:36 (17084): Guest Log: 00:00:00.001581 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 22:08:36 (17084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 22:08:36 (17084): Guest Log: [INFO] Mounting shared directory
2025-06-04 22:08:36 (17084): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 22:08:43 (17084): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 22:08:43 (17084): Guest Log: [INFO] Detected branch: prod
2025-06-04 22:08:43 (17084): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 22:08:43 (17084): Guest Log: Copying input files
2025-06-04 22:08:45 (17084): Guest Log: Copied input files into RunAtlas.
2025-06-04 22:08:45 (17084): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 22:08:45 (17084): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 22:08:45 (17084): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 22:08:45 (17084): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 22:08:46 (17084): Guest Log: 00:00:10.007992 timesync vgsvcTimeSyncWorker: Radical guest time change: -35 988 812 089 000ns (GuestNow=1 749 038 925 826 798 000 ns GuestLast=1 749 074 914 638 887 000 ns fSetTimeLastLoop=true )
2025-06-04 22:08:56 (17084): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 22:08:56 (17084): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 22:08:56 (17084): Guest Log: 2.6.3.0 1652 0 32184 146779 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 22:08:57 (17084): Guest Log: copied the webapp to /var/www
2025-06-04 22:08:57 (17084): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 22:08:57 (17084): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 22:08:57 (17084): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 22:08:57 (17084): Guest Log:  *** Starting ATLAS job. (PandaID=6678597015 taskID=44871837) ***
2025-06-04 22:19:19 (17084): Preference change detected
2025-06-04 22:19:19 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 22:19:19 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:07:12 (17084): Preference change detected
2025-06-04 23:07:12 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 23:07:12 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:15:43 (17084): Preference change detected
2025-06-04 23:15:43 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 23:15:44 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:17:19 (17084): Preference change detected
2025-06-04 23:17:19 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 23:17:20 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:19:54 (17084): Preference change detected
2025-06-04 23:19:54 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 23:19:55 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:31:37 (17084): Preference change detected
2025-06-04 23:31:37 (17084): Setting CPU throttle for VM. (100%)
2025-06-04 23:31:37 (17084): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 23:48:24 (17084): Status Report: Elapsed Time: '6000.000000'
2025-06-04 23:48:24 (17084): Status Report: CPU Time: '38758.093750'
2025-06-05 00:55:48 (17084): Guest Log:  *** Job finished ***
2025-06-05 00:55:48 (17084): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:39,429 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:40,448 | INFO     | [job] queue monitor thread has finished
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:40,696 | INFO     | [data] queue_monitor thread has finished
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:41,633 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304153499456)>', '<ExcThread(monitor, started 140303847626496)>']
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:42,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:42,482 | INFO     | [monitor] control thread has ended
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,650 | INFO     | all workflow threads have been joined
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,650 | INFO     | end of generic workflow (traces error code: 0)
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,651 | INFO     | traces error code: 0
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,779 [wrapper] ==== pilot stdout END ====
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,787 [wrapper] ==== wrapper stdout RESUME ====
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,794 [wrapper] pilotpid: 6000
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,801 [wrapper] Pilot exit status: 0
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,880 [wrapper] pandaids: 6678597015
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,919 [wrapper] cleanup supervisor_pilot  6531 6001
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,931 [wrapper] Test setup, not cleaning
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,938 [wrapper] apfmon messages muted
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,944 [wrapper] ==== wrapper stdout END ====
2025-06-05 00:55:48 (17084): Guest Log: 2025-06-04 14:55:46,951 [wrapper] ==== wrapper stderr END ====
2025-06-05 00:55:48 (17084): Guest Log:  *** Error codes and diagnostics ***
2025-06-05 00:55:48 (17084): Guest Log:     "exeErrorCode": 0,
2025-06-05 00:55:48 (17084): Guest Log:     "exeErrorDiag": "",
2025-06-05 00:55:48 (17084): Guest Log:     "pilotErrorCode": 0,
2025-06-05 00:55:48 (17084): Guest Log:     "pilotErrorDiag": "",
2025-06-05 00:55:48 (17084): Guest Log:  *** Listing of results directory ***
2025-06-05 00:55:48 (17084): Guest Log: total 192936
2025-06-05 00:55:48 (17084): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 07:34 pilot3.tar.gz
2025-06-05 00:55:48 (17084): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 07:46 queuedata.json
2025-06-05 00:55:48 (17084): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 07:47 runpilot2-wrapper.sh
2025-06-05 00:55:48 (17084): Guest Log: -rwxr-xr-x. 1 atlas atlas      9335 Jun  4 12:08 init_data.xml
2025-06-05 00:55:48 (17084): Guest Log: -rwxr-xr-x. 1 atlas atlas    508884 Jun  4 12:08 input.tar.gz
2025-06-05 00:55:48 (17084): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  4 12:08 start_atlas.sh
2025-06-05 00:55:48 (17084): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 12:08 EVNT.44871834._002307.pool.root.1 -> /data/./ATLAS.root_0
2025-06-05 00:55:48 (17084): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  4 12:08 pandaJob.out
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas    986812 Jun  4 12:09 agis_schedconf.cvmfs.json
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 12:09 agis_ddmendpoints.agis.ALL.json
2025-06-05 00:55:48 (17084): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 12:10 pilot3
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas 191428307 Jun  4 14:54 HITS.44871837._102139.pool.root.1
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas      1032 Jun  4 14:55 memory_monitor_summary.json
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas    352339 Jun  4 14:55 log.44871837._102139.job.log.tgz.1
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 14:55 pilot_heartbeat.json
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas      7727 Jun  4 14:55 heartbeat.json
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas      4536 Jun  4 14:55 pilotlog.txt
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas    834028 Jun  4 14:55 log.44871837._102139.job.log.1
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 14:55 output.list
2025-06-05 00:55:48 (17084): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 14:55 runtime_log
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas   1208320 Jun  4 14:55 result.tar.gz
2025-06-05 00:55:48 (17084): Guest Log: -rw-r--r--. 1 atlas atlas      8578 Jun  4 14:55 runtime_log.err
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas       651 Jun  4 14:55 o36LDmO1xg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmjnKDmJ24VDn.diag
2025-06-05 00:55:48 (17084): Guest Log: Looking for outputfile HITS.44871837._102139.pool.root.1
2025-06-05 00:55:48 (17084): Guest Log: HITS file was successfully produced
2025-06-05 00:55:48 (17084): Guest Log: -rw-------. 1 atlas atlas 191428307 Jun  4 14:54 /home/atlas/RunAtlas/HITS.44871837._102139.pool.root.1
2025-06-05 00:55:49 (17084): Guest Log: Successfully finished the ATLAS job!
2025-06-05 00:55:49 (17084): Guest Log: Copying the results back to the shared directory!
2025-06-05 00:55:49 (17084): Guest Log:  *** Contents of shared directory: ***
2025-06-05 00:55:49 (17084): Guest Log: total 407964
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root 224574953 Jun  4 12:08 ATLAS.root_0
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root 191428307 Jun  4 14:55 HITS.pool.root.1
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root      9335 Jun  4 12:08 init_data.xml
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root    508884 Jun  4 12:07 input.tar.gz
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root   1208320 Jun  4 14:55 result.tar.gz
2025-06-05 00:55:49 (17084): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 12:07 start_atlas.sh
2025-06-05 00:55:49 (17084): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-05 00:55:49 (17084): VM Completion File Detected.
2025-06-05 00:55:49 (17084): Powering off VM.
2025-06-05 00:55:50 (17084): Successfully stopped VM.
2025-06-05 00:55:50 (17084): Deregistering VM. (boinc_ee90d2281afec109, slot#34)
2025-06-05 00:55:50 (17084): Removing network bandwidth throttle group from VM.
2025-06-05 00:55:51 (17084): Removing VM from VirtualBox.
00:55:56 (17084): called boinc_finish(0)

</stderr_txt>
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