Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:04:31 (311385): wrapper (7.7.26015): starting
08:04:31 (311385): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:04:32] Arguments: --nthreads 8
[2025-06-04 08:04:32] Threads: 8
[2025-06-04 08:04:32] Checking for CVMFS
[2025-06-04 08:04:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:04:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:04:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:04:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:04:32] 2.12.6.0 10346 1307 146392 146779 2 455 17810826 32935936 10058 16776704 0 18055313 99.950 2176316 38503 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:04:32] CVMFS is ok
[2025-06-04 08:04:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:04:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:04:32] Further information can be found at the LHC@home message board.
[2025-06-04 08:04:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:04:32] Checking for apptainer binary...
[2025-06-04 08:04:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:04:32] Running /usr/bin/apptainer --version
[2025-06-04 08:04:32] apptainer version 1.4.1-1.el9
[2025-06-04 08:04:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:04:32] c6-8-25-4.aglt2.org
[2025-06-04 08:04:32] apptainer works
[2025-06-04 08:04:32] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:04:32] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:04:32] Starting ATLAS job with PandaID=6678312732
[2025-06-04 08:04:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:00:40]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:00:40]  protocol_id=None
[2025-06-04 09:00:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:00:40]  replicas=None
[2025-06-04 09:00:40]  scope=mc23_13p6TeV
[2025-06-04 09:00:40]  status=None
[2025-06-04 09:00:40]  status_code=0
[2025-06-04 09:00:40]  storage_token=
[2025-06-04 09:00:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678312732/log.45006595._052178.job.log.tgz.1
[2025-06-04 09:00:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/0b/log.45006595._052178.job.log.tgz.1
[2025-06-04 09:00:40]  workdir=None
[2025-06-04 09:00:40] ]
[2025-06-04 09:00:40] 2025-06-04 13:00:23,357 | INFO     | transferring file log.45006595._052178.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678312732/log.45006595._052178.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:00:40] 2025-06-04 13:00:23,357 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678312732/log.45006595._052178.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._052178.job
[2025-06-04 09:00:40] 2025-06-04 13:00:23,369 | INFO     | adding to output.list: log.45006595._052178.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f9/0b/log.45006595._052178.job.log.tg
[2025-06-04 09:00:40] 2025-06-04 13:00:23,370 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:00:40] 2025-06-04 13:00:23,370 | INFO     | summary of transferred files:
[2025-06-04 09:00:40] 2025-06-04 13:00:23,370 | INFO     |  -- lfn=log.45006595._052178.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:00:40] 2025-06-04 13:00:23,370 | INFO     | stage-out finished correctly
[2025-06-04 09:00:40] 2025-06-04 13:00:23,419 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | job 6678312732 has state=finished
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | preparing for final server update for job 6678312732 in state='finished'
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | job 6678312732 has finished - writing final server update
[2025-06-04 09:00:40] 2025-06-04 13:00:23,465 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:00:40] 2025-06-04 13:00:23,481 | INFO     | executing command: lscpu
[2025-06-04 09:00:40] 2025-06-04 13:00:23,534 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:00:40] 2025-06-04 13:00:25,711 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:00:40] 2025-06-04 13:00:25,711 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678312732/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:00:40] 2025-06-04 13:00:25,712 | INFO     | extracted standard info from prmon json
[2025-06-04 09:00:40] 2025-06-04 13:00:25,712 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:00:40] 2025-06-04 13:00:25,712 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:00:40] 2025-06-04 13:00:25,712 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:00:40] 2025-06-04 13:00:25,712 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | sum of square deviations: 34277852.0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | sum of deviations: 5067694834.500002
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | mean x: 1749040440.5
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | mean y: 2122623.9791666665
[2025-06-04 09:00:40] 2025-06-04 13:00:25,713 | INFO     | -- intersect: -258578934486.9932
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | intersect: -258578934486.9932
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | chi2: 0.7667167792213511
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | -- intersect: -258578934486.9932
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | current memory leak: 147.84 B/s (using 48 data points, chi2=0.77)
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | ..............................
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . Timing measurements:
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . get job = 0 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . initial setup = 2 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . payload setup = 4 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . stage-in = 0 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . payload execution = 3321 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . stage-out = 0 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | . log creation = 0 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,714 | INFO     | ..............................
[2025-06-04 09:00:40] 2025-06-04 13:00:25,763 | INFO     | 
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | job summary report
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | --------------------------------------------------
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | PanDA job id: 6678312732
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | task id: 45006595
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | errors: (none)
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | pilot state: finished 
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | transexitcode: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | exeerrorcode: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | exeerrordiag: 
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | exitcode: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | exitmsg: OK
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | cpuconsumptiontime: 21353 s
[2025-06-04 09:00:40] 2025-06-04 13:00:25,764 | INFO     | nevents: 400
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | neventsw: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | pid: 321501
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | pgrp: 321501
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | corecount: 8
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | event service: False
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | sizes: {0: 2396508, 1: 2397364, 4: 2397570, 12: 2397598, 3329: 2423038, 3330: 2432163, 3332: 2432277}
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | --------------------------------------------------
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | 
[2025-06-04 09:00:40] 2025-06-04 13:00:25,765 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:00:40] 2025-06-04 13:00:25,779 | INFO     | job 6678312732 has completed (purged errors)
[2025-06-04 09:00:40] 2025-06-04 13:00:25,780 | INFO     | overall cleanup function is called
[2025-06-04 09:00:40] 2025-06-04 13:00:26,786 | INFO     | --- collectZombieJob: --- 10, [321501]
[2025-06-04 09:00:40] 2025-06-04 13:00:26,787 | INFO     | zombie collector waiting for pid 321501
[2025-06-04 09:00:40] 2025-06-04 13:00:26,787 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:00:40] 2025-06-04 13:00:26,787 | INFO     | collected zombie processes
[2025-06-04 09:00:40] 2025-06-04 13:00:26,787 | INFO     | will attempt to kill all subprocesses of pid=321501
[2025-06-04 09:00:40] 2025-06-04 13:00:27,047 | INFO     | process IDs to be killed: [321501] (in reverse order)
[2025-06-04 09:00:40] 2025-06-04 13:00:27,104 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:00:40] 2025-06-04 13:00:27,104 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:00:40] 2025-06-04 13:00:27,113 | INFO     | did not find any defunct processes belonging to 321501
[2025-06-04 09:00:40] 2025-06-04 13:00:27,120 | INFO     | did not find any defunct processes belonging to 321501
[2025-06-04 09:00:40] 2025-06-04 13:00:27,120 | INFO     | ready for new job
[2025-06-04 09:00:40] 2025-06-04 13:00:27,120 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:00:40] 2025-06-04 13:00:27,121 | INFO     | **************************************
[2025-06-04 09:00:40] 2025-06-04 13:00:27,121 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:00:40] 2025-06-04 13:00:27,121 | INFO     | **************************************
[2025-06-04 09:00:40] 2025-06-04 13:00:27,121 | INFO     | 
[2025-06-04 09:00:40] 2025-06-04 13:00:27,137 | INFO     | architecture information:
[2025-06-04 09:00:40] 2025-06-04 13:00:27,138 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:00:40] 2025-06-04 13:00:27,148 | INFO     | cat /etc/os-release:
[2025-06-04 09:00:40] NAME="CentOS Linux"
[2025-06-04 09:00:40] VERSION="7 (Core)"
[2025-06-04 09:00:40] ID="centos"
[2025-06-04 09:00:40] ID_LIKE="rhel fedora"
[2025-06-04 09:00:40] VERSION_ID="7"
[2025-06-04 09:00:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:00:40] ANSI_COLOR="0;31"
[2025-06-04 09:00:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:00:40] HOME_URL="https://www.centos.org/"
[2025-06-04 09:00:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:00:40] 
[2025-06-04 09:00:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:00:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:00:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:00:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:00:40] 
[2025-06-04 09:00:40] 2025-06-04 13:00:27,148 | INFO     | **************************************
[2025-06-04 09:00:40] 2025-06-04 13:00:27,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:00:40] 2025-06-04 13:00:27,665 | INFO     | sufficient remaining disk space (75554095104 B)
[2025-06-04 09:00:40] 2025-06-04 13:00:27,665 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:00:40] 2025-06-04 13:00:27,666 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:00:40] 2025-06-04 13:00:27,666 | INFO     | update_server=False
[2025-06-04 09:00:40] 2025-06-04 13:00:27,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:00:40] 2025-06-04 13:00:27,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:00:40] 2025-06-04 13:00:27,952 | INFO     | PID=315004 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-06-04 09:00:40] 2025-06-04 13:00:27,952 | INFO     | .. there are 15 such processes running
[2025-06-04 09:00:40] 2025-06-04 13:00:27,952 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:00:40] 2025-06-04 13:00:27,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:00:40] 2025-06-04 13:00:27,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:00:40] 2025-06-04 13:00:28,206 | INFO     | all data control threads have been joined
[2025-06-04 09:00:40] 2025-06-04 13:00:28,420 | INFO     | all payload control threads have been joined
[2025-06-04 09:00:40] 2025-06-04 13:00:28,564 | INFO     | all job control threads have been joined
[2025-06-04 09:00:40] 2025-06-04 13:00:28,671 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:28,672 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:28,926 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:00:40] 2025-06-04 13:00:29,106 | INFO     | [job] validate thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,152 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,212 | INFO     | [data] control thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,402 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,413 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,420 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,426 | INFO     | [payload] control thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,470 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:00:40] 2025-06-04 13:00:29,500 | WARNING  | process 321501 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:00:40] 2025-06-04 13:00:29,570 | INFO     | [job] control thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,697 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:00:40] 2025-06-04 13:00:29,697 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:00:40] 2025-06-04 13:00:29,698 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-6678312732/payload.stdout) since it has not been created yet
[2025-06-04 09:00:40] 2025-06-04 13:00:29,698 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:00:40] 2025-06-04 13:00:29,709 | INFO     | sufficient remaining disk space (75554095104 B)
[2025-06-04 09:00:40] 2025-06-04 13:00:29,709 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-06-04 09:00:40] 2025-06-04 13:00:29,709 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6678312732/HITS.45006595._052178.pool.root.1 since it does not exist
[2025-06-04 09:00:40] 2025-06-04 13:00:29,830 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:29,904 | INFO     | number of running child processes to parent process 321501: 1
[2025-06-04 09:00:40] 2025-06-04 13:00:29,904 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:00:40] 2025-06-04 13:00:29,904 | INFO     | aborting job monitoring since job object (job id=6678312732) has expired
[2025-06-04 09:00:40] 2025-06-04 13:00:29,904 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:00:40] 2025-06-04 13:00:29,904 | INFO     | will abort loop
[2025-06-04 09:00:40] 2025-06-04 13:00:30,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:30,272 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:30,908 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:30,932 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:33,476 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:00:40] 2025-06-04 13:00:34,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531268216640)>', '<ExcThread(monitor, started 140530633656064)>']
[2025-06-04 09:00:40] 2025-06-04 13:00:34,985 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:00:40] 2025-06-04 13:00:34,985 | INFO     | [monitor] control thread has ended
[2025-06-04 09:00:40] 2025-06-04 13:00:39,995 | INFO     | all workflow threads have been joined
[2025-06-04 09:00:40] 2025-06-04 13:00:39,996 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:00:40] 2025-06-04 13:00:39,996 | INFO     | traces error code: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:39,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:00:40] 2025-06-04 13:00:40,094 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:00:40] 2025-06-04 13:00:40,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:00:40] 2025-06-04 13:00:40,097 [wrapper] pilotpid: 315004
[2025-06-04 09:00:40] 2025-06-04 13:00:40,099 [wrapper] Pilot exit status: 0
[2025-06-04 09:00:40] 2025-06-04 13:00:40,105 [wrapper] pandaids: 6678312732
[2025-06-04 09:00:40] 2025-06-04 13:00:40,148 [wrapper] cleanup supervisor_pilot  495300 315005
[2025-06-04 09:00:40] 2025-06-04 13:00:40,150 [wrapper] Test setup, not cleaning
[2025-06-04 09:00:40] 2025-06-04 13:00:40,152 [wrapper] apfmon messages muted
[2025-06-04 09:00:40] 2025-06-04 13:00:40,154 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:00:40] 2025-06-04 13:00:40,155 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:00:40]  *** Error codes and diagnostics ***
[2025-06-04 09:00:40]     "exeErrorCode": 0,
[2025-06-04 09:00:40]     "exeErrorDiag": "",
[2025-06-04 09:00:40]     "pilotErrorCode": 0,
[2025-06-04 09:00:40]     "pilotErrorDiag": "",
[2025-06-04 09:00:40]  *** Listing of results directory ***
[2025-06-04 09:00:40] total 386796
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:04 pilot3.tar.gz
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 00:12 queuedata.json
[2025-06-04 09:00:40] -rwx------. 1 boincer umatlas     37140 Jun  4 00:13 runpilot2-wrapper.sh
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:00:40] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:04 run_atlas
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:04 job.xml
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas 215159456 Jun  4 08:04 EVNT.45006593._002090.pool.root.1
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:04 start_atlas.sh
[2025-06-04 09:00:40] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:04 shared
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 08:04 input.tar.gz
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:04 boinc_lockfile
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas      2522 Jun  4 08:04 pandaJob.out
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas    986812 Jun  4 08:04 agis_schedconf.cvmfs.json
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:00:40] drwx------. 4 boincer umatlas      4096 Jun  4 08:04 pilot3
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas      6857 Jun  4 08:57 init_data.xml
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas        95 Jun  4 08:59 pilot_heartbeat.json
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas 175849801 Jun  4 08:59 HITS.45006595._052178.pool.root.1
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:00 boinc_task_state.xml
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas      1039 Jun  4 09:00 memory_monitor_summary.json
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas    276475 Jun  4 09:00 log.45006595._052178.job.log.tgz.1
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas      7719 Jun  4 09:00 heartbeat.json
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:00 boinc_mmap_file
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:00 wrapper_checkpoint.txt
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas      6024 Jun  4 09:00 pilotlog.txt
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas    342265 Jun  4 09:00 log.45006595._052178.job.log.1
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas       357 Jun  4 09:00 output.list
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:00 runtime_log
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas    634880 Jun  4 09:00 result.tar.gz
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas      8664 Jun  4 09:00 runtime_log.err
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas       651 Jun  4 09:00 fEVNDm7fug7n9Rq4apOajLDm4fhM0noT9bVof3QYDmNgaKDmxGMVGm.diag
[2025-06-04 09:00:40] -rw-r--r--. 1 boincer umatlas     21932 Jun  4 09:00 stderr.txt
[2025-06-04 09:00:40] HITS file was successfully produced:
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas 175849801 Jun  4 08:59 shared/HITS.pool.root.1
[2025-06-04 09:00:40]  *** Contents of shared directory: ***
[2025-06-04 09:00:40] total 382996
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas 215159456 Jun  4 08:04 ATLAS.root_0
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:04 start_atlas.sh
[2025-06-04 09:00:40] -rw-r--r--. 2 boincer umatlas    508882 Jun  4 08:04 input.tar.gz
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas 175849801 Jun  4 08:59 HITS.pool.root.1
[2025-06-04 09:00:40] -rw-------. 1 boincer umatlas    634880 Jun  4 09:00 result.tar.gz
09:00:41 (311385): run_atlas exited; CPU time 21467.226687
09:00:41 (311385): called boinc_finish(0)

</stderr_txt>
]]>

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