Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 15:38:44 (19584): Detected: vboxwrapper 26206
2025-06-04 15:38:44 (19584): Detected: BOINC client v8.0.2
2025-06-04 15:38:44 (19584): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-06-04 15:38:45 (19584): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 15:38:45 (19584): Create VM. (boinc_335ad1b6e52ad4a3, slot#8)
2025-06-04 15:38:46 (19584): Setting Memory Size for VM. (4800MB)
2025-06-04 15:38:46 (19584): Setting CPU Count for VM. (8)
2025-06-04 15:38:46 (19584): Setting Chipset Options for VM.
2025-06-04 15:38:46 (19584): Setting Graphics Controller Options for VM.
2025-06-04 15:38:47 (19584): Setting Boot Options for VM.
2025-06-04 15:38:47 (19584): Setting Network Configuration for NAT.
2025-06-04 15:38:47 (19584): Enabling VM Network Access.
2025-06-04 15:38:47 (19584): Disabling USB Support for VM.
2025-06-04 15:38:48 (19584): Disabling COM Port Support for VM.
2025-06-04 15:38:48 (19584): Disabling LPT Port Support for VM.
2025-06-04 15:38:48 (19584): Disabling Audio Support for VM.
2025-06-04 15:38:48 (19584): Disabling Clipboard Support for VM.
2025-06-04 15:38:49 (19584): Disabling Drag and Drop Support for VM.
2025-06-04 15:38:49 (19584): Adding storage controller(s) to VM.
2025-06-04 15:38:49 (19584): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 15:38:52 (19584): Adding VirtualBox Guest Additions to VM.
2025-06-04 15:38:52 (19584): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 15:38:53 (19584): forwarding host port 56403 to guest port 80
2025-06-04 15:38:53 (19584): Enabling remote desktop for VM.
2025-06-04 15:38:53 (19584): Enabling shared directory for VM.
2025-06-04 15:38:54 (19584): Starting VM using VBoxManage interface. (boinc_335ad1b6e52ad4a3, slot#8)
2025-06-04 15:38:59 (19584): Successfully started VM. (PID = '19184')
2025-06-04 15:38:59 (19584): Reporting VM Process ID to BOINC.
2025-06-04 15:38:59 (19584): Guest Log: BIOS: VirtualBox 7.1.6
2025-06-04 15:38:59 (19584): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 15:38:59 (19584): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 15:38:59 (19584): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 15:38:59 (19584): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 15:38:59 (19584): Detected: Web Application Enabled (http://localhost:56403)
2025-06-04 15:38:59 (19584): Detected: Remote Desktop Enabled (localhost:56404)
2025-06-04 15:38:59 (19584): Preference change detected
2025-06-04 15:38:59 (19584): Setting CPU throttle for VM. (100%)
2025-06-04 15:39:00 (19584): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 15:39:02 (19584): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 15:39:02 (19584): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 15:39:05 (19584): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 15:39:05 (19584): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 15:39:05 (19584): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 15:39:10 (19584): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 15:39:10 (19584): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 15:39:15 (19584): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000139 main     Log opened 2025-06-04T15:39:12.568949000Z
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000216 main     OS Product: Linux
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000244 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000268 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000291 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000292 main     Process ID: 1371
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.000292 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 15:39:15 (19584): Guest Log: 00:00:00.001887 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 15:39:15 (19584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 15:39:15 (19584): Guest Log: [INFO] Mounting shared directory
2025-06-04 15:39:15 (19584): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 15:39:25 (19584): Guest Log: 00:00:10.005109 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 531 198 000ns (GuestNow=1 749 044 364 041 837 000 ns GuestLast=1 749 051 552 573 035 000 ns fSetTimeLastLoop=true )
2025-06-04 15:42:23 (19584): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 15:42:23 (19584): Guest Log: [INFO] Detected branch: prod
2025-06-04 15:42:23 (19584): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 15:42:23 (19584): Guest Log: Copying input files
2025-06-04 15:42:25 (19584): Guest Log: Copied input files into RunAtlas.
2025-06-04 15:42:25 (19584): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-04 15:42:25 (19584): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-04 15:42:25 (19584): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-04 15:42:25 (19584): Guest Log: Further information can be found at the LHC@home message board.
2025-06-04 15:45:46 (19584): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 15:45:46 (19584): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 15:45:46 (19584): Guest Log: 2.6.3.0 1706 5 32260 146781 4 1 3117617 4096000 0 65024 0 0 n/a 1 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-04 15:45:46 (19584): Guest Log: copied the webapp to /var/www
2025-06-04 15:45:46 (19584): Guest Log: ATHENA_PROC_NUMBER=8
2025-06-04 15:45:46 (19584): Guest Log: ATHENA_CORE_NUMBER=8
2025-06-04 15:45:47 (19584): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 15:45:47 (19584): Guest Log:  *** Starting ATLAS job. (PandaID=6678392127 taskID=45006595) ***
2025-06-04 15:56:30 (19584): Guest Log:  *** Job finished ***
2025-06-04 15:56:30 (19584): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:56,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:57,456 | INFO     | [job] queue monitor thread has finished
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:58,534 | INFO     | [data] queue_monitor thread has finished
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:58,560 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140505624885056)>', '<ExcThread(monitor, started 140504813528832)>']
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:59,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:55:59,559 | INFO     | [monitor] control thread has ended
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,596 | INFO     | all workflow threads have been joined
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,597 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,597 | INFO     | traces error code: 0
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,670 [wrapper] ==== pilot stdout END ====
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,674 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,678 [wrapper] pilotpid: 6145
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:03,683 [wrapper] Pilot exit status: 0
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,081 [wrapper] pandaids: 6678392127
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,113 [wrapper] cleanup supervisor_pilot  6151 6146
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,121 [wrapper] Test setup, not cleaning
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,127 [wrapper] apfmon messages muted
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,132 [wrapper] ==== wrapper stdout END ====
2025-06-04 15:56:30 (19584): Guest Log: 2025-06-04 13:56:29,137 [wrapper] ==== wrapper stderr END ====
2025-06-04 15:56:30 (19584): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 15:56:30 (19584): Guest Log:     "exeErrorCode": 65,
2025-06-04 15:56:30 (19584): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-06-04 15:56:30 (19584): Guest Log:     "pilotErrorCode": 1305,
2025-06-04 15:56:30 (19584): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-06-04 15:56:30 (19584): Guest Log:  *** Listing of results directory ***
2025-06-04 15:56:30 (19584): Guest Log: total 3880
2025-06-04 15:56:30 (19584): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Jun  4 07:34 queuedata.json
2025-06-04 15:56:30 (19584): Guest Log: -rw-r--r--. 1 atlas atlas  495897 Jun  4 07:34 pilot3.tar.gz
2025-06-04 15:56:30 (19584): Guest Log: -rwx------. 1 atlas atlas   37140 Jun  4 07:36 runpilot2-wrapper.sh
2025-06-04 15:56:30 (19584): Guest Log: -rwxr-xr-x. 1 atlas atlas    9128 Jun  4 13:42 init_data.xml
2025-06-04 15:56:30 (19584): Guest Log: -rwxr-xr-x. 1 atlas atlas  508887 Jun  4 13:42 input.tar.gz
2025-06-04 15:56:30 (19584): Guest Log: -rwxr-xr-x. 1 atlas atlas   15093 Jun  4 13:42 start_atlas.sh
2025-06-04 15:56:30 (19584): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jun  4 13:42 EVNT.45006593._002207.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 15:56:30 (19584): Guest Log: -rw-r--r--. 1 atlas atlas    2525 Jun  4 13:45 pandaJob.out
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas  986819 Jun  4 13:50 agis_schedconf.cvmfs.json
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas 1598969 Jun  4 13:50 agis_ddmendpoints.agis.ALL.json
2025-06-04 15:56:30 (19584): Guest Log: drwx------. 4 atlas atlas    4096 Jun  4 13:50 pilot3
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas    1005 Jun  4 13:53 memory_monitor_summary.json
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas   21226 Jun  4 13:53 log.45006595._055156.job.log.tgz.1
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas      95 Jun  4 13:55 pilot_heartbeat.json
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas    8365 Jun  4 13:55 heartbeat.json
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas    4599 Jun  4 13:56 pilotlog.txt
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas   82962 Jun  4 13:56 log.45006595._055156.job.log.1
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas     188 Jun  4 13:56 output.list
2025-06-04 15:56:30 (19584): Guest Log: -rw-r--r--. 1 atlas atlas     620 Jun  4 13:56 runtime_log
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas  122880 Jun  4 13:56 result.tar.gz
2025-06-04 15:56:30 (19584): Guest Log: -rw-------. 1 atlas atlas     655 Jun  4 13:56 Wv8NDmIrxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHenKDmWKEdVn.diag
2025-06-04 15:56:30 (19584): Guest Log: -rw-r--r--. 1 atlas atlas    8474 Jun  4 13:56 runtime_log.err
2025-06-04 15:56:30 (19584): Guest Log: Looking for outputfile HITS.45006595._055156.pool.root.1
2025-06-04 15:56:30 (19584): Guest Log: No HITS file was produced
2025-06-04 15:56:30 (19584): Guest Log: Successfully finished the ATLAS job!
2025-06-04 15:56:30 (19584): Guest Log: Copying the results back to the shared directory!
2025-06-04 15:56:30 (19584): Guest Log:  *** Contents of shared directory: ***
2025-06-04 15:56:30 (19584): Guest Log: total 209028
2025-06-04 15:56:30 (19584): Guest Log: -rwxrwxrwx. 1 root root 213379142 Jun  4 13:38 ATLAS.root_0
2025-06-04 15:56:30 (19584): Guest Log: -rwxrwxrwx. 1 root root      9128 Jun  4 13:38 init_data.xml
2025-06-04 15:56:30 (19584): Guest Log: -rwxrwxrwx. 1 root root    508887 Jun  4 12:01 input.tar.gz
2025-06-04 15:56:30 (19584): Guest Log: -rwxrwxrwx. 1 root root    122880 Jun  4 13:56 result.tar.gz
2025-06-04 15:56:30 (19584): Guest Log: -rwxrwxrwx. 1 root root     15093 Jun  4 12:01 start_atlas.sh
2025-06-04 15:56:30 (19584): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 15:56:30 (19584): VM Completion File Detected.
2025-06-04 15:56:30 (19584): Powering off VM.
2025-06-04 15:56:31 (19584): Successfully stopped VM.
2025-06-04 15:56:31 (19584): Deregistering VM. (boinc_335ad1b6e52ad4a3, slot#8)
2025-06-04 15:56:31 (19584): Removing network bandwidth throttle group from VM.
2025-06-04 15:56:31 (19584): Removing VM from VirtualBox.
15:56:36 (19584): called boinc_finish(0)

</stderr_txt>
]]>

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