Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:13:46 (3516489): wrapper (7.7.26015): starting
08:13:46 (3516489): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:13:46] Arguments: --nthreads 8
[2025-06-04 08:13:46] Threads: 8
[2025-06-04 08:13:46] Checking for CVMFS
[2025-06-04 08:13:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:13:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:13:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:13:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:13:46] 2.12.6.0 46158 23756 409280 146779 2 856 21430068 40960000 47960 16776704 0 367467174 99.775 212699157 34096 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:13:46] CVMFS is ok
[2025-06-04 08:13:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:13:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:13:46] Further information can be found at the LHC@home message board.
[2025-06-04 08:13:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:13:46] Checking for apptainer binary...
[2025-06-04 08:13:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:13:46] Running /usr/bin/apptainer --version
[2025-06-04 08:13:46] apptainer version 1.4.1-1.el9
[2025-06-04 08:13:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:13:46] c8-6-11.aglt2.org
[2025-06-04 08:13:46] apptainer works
[2025-06-04 08:13:46] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:13:46] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:13:47] Starting ATLAS job with PandaID=6678390279
[2025-06-04 08:13:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:05:56]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:05:56]  protocol_id=None
[2025-06-04 09:05:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:05:56]  replicas=None
[2025-06-04 09:05:56]  scope=mc23_13p6TeV
[2025-06-04 09:05:56]  status=None
[2025-06-04 09:05:56]  status_code=0
[2025-06-04 09:05:56]  storage_token=
[2025-06-04 09:05:56]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678390279/log.45006595._054730.job.log.tgz.1
[2025-06-04 09:05:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/96/log.45006595._054730.job.log.tgz.1
[2025-06-04 09:05:56]  workdir=None
[2025-06-04 09:05:56] ]
[2025-06-04 09:05:56] 2025-06-04 13:05:27,453 | INFO     | transferring file log.45006595._054730.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678390279/log.45006595._054730.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:05:56] 2025-06-04 13:05:27,453 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678390279/log.45006595._054730.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._054730.job
[2025-06-04 09:05:56] 2025-06-04 13:05:27,473 | INFO     | adding to output.list: log.45006595._054730.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bf/96/log.45006595._054730.job.log.tg
[2025-06-04 09:05:56] 2025-06-04 13:05:27,474 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:05:56] 2025-06-04 13:05:27,474 | INFO     | summary of transferred files:
[2025-06-04 09:05:56] 2025-06-04 13:05:27,474 | INFO     |  -- lfn=log.45006595._054730.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:05:56] 2025-06-04 13:05:27,474 | INFO     | stage-out finished correctly
[2025-06-04 09:05:56] 2025-06-04 13:05:28,785 | WARNING  | process 3558340 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:05:56] 2025-06-04 13:05:28,785 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678390279/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:05:56] 2025-06-04 13:05:28,786 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678390279/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:05:56] 2025-06-04 13:05:29,276 | INFO     | number of running child processes to parent process 3558340: 1
[2025-06-04 09:05:56] 2025-06-04 13:05:29,276 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:05:56] 2025-06-04 13:05:30,961 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:05:56] 2025-06-04 13:05:31,017 | INFO     | job 6678390279 has state=finished
[2025-06-04 09:05:56] 2025-06-04 13:05:31,018 | INFO     | preparing for final server update for job 6678390279 in state='finished'
[2025-06-04 09:05:56] 2025-06-04 13:05:31,018 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:05:56] 2025-06-04 13:05:31,019 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:05:56] 2025-06-04 13:05:31,019 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:05:56] 2025-06-04 13:05:31,019 | INFO     | job 6678390279 has finished - writing final server update
[2025-06-04 09:05:56] 2025-06-04 13:05:31,019 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:05:56] 2025-06-04 13:05:31,039 | INFO     | executing command: lscpu
[2025-06-04 09:05:56] 2025-06-04 13:05:31,129 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:05:56] 2025-06-04 13:05:31,468 | INFO     | PID=3525294 has CPU usage=16.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 09:05:56] 2025-06-04 13:05:31,469 | INFO     | .. there are 77 such processes running
[2025-06-04 09:05:56] 2025-06-04 13:05:31,779 | INFO     | monitor loop #221: job 0:6678390279 is in state 'finished'
[2025-06-04 09:05:56] 2025-06-04 13:05:31,780 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:05:56] 2025-06-04 13:05:34,283 | INFO     | monitor loop #222: job 0:6678390279 is in state 'finished'
[2025-06-04 09:05:56] 2025-06-04 13:05:34,283 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,466 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678390279/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | INFO     | extracted standard info from prmon json
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:05:56] 2025-06-04 13:05:35,467 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:05:56] 2025-06-04 13:05:35,468 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:05:56] 2025-06-04 13:05:35,468 | INFO     | sum of square deviations: 26400495.0
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | sum of deviations: 5171330692.999999
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | mean x: 1749040879.5
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | mean y: 2257508.1818181816
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | -- intersect: -342599984740.3087
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | intersect: -342599984740.3087
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | chi2: 0.7442383626232563
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | -- intersect: -342599984740.3087
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | current memory leak: 195.88 B/s (using 44 data points, chi2=0.74)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | ..............................
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . Timing measurements:
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . get job = 0 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . initial setup = 2 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . payload setup = 6 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . stage-in = 0 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . payload execution = 3065 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . stage-out = 0 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | . log creation = 0 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,469 | INFO     | ..............................
[2025-06-04 09:05:56] 2025-06-04 13:05:35,527 | INFO     | 
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | job summary report
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | --------------------------------------------------
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | PanDA job id: 6678390279
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | task id: 45006595
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | errors: (none)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | pilot state: finished 
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | transexitcode: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | exeerrorcode: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | exeerrordiag: 
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | exitcode: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | exitmsg: OK
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | cpuconsumptiontime: 19572 s
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | nevents: 400
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | neventsw: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | pid: 3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | pgrp: 3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:35,529 | INFO     | corecount: 8
[2025-06-04 09:05:56] 2025-06-04 13:05:35,530 | INFO     | event service: False
[2025-06-04 09:05:56] 2025-06-04 13:05:35,530 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 3075: 2423021, 3076: 2431962, 3079: 2432018, 3084: 2432316}
[2025-06-04 09:05:56] 2025-06-04 13:05:35,530 | INFO     | --------------------------------------------------
[2025-06-04 09:05:56] 2025-06-04 13:05:35,530 | INFO     | 
[2025-06-04 09:05:56] 2025-06-04 13:05:35,530 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 09:05:56] 2025-06-04 13:05:35,547 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | job 6678390279 has completed (purged errors)
[2025-06-04 09:05:56] 2025-06-04 13:05:35,548 | INFO     | overall cleanup function is called
[2025-06-04 09:05:56] 2025-06-04 13:05:36,555 | INFO     | --- collectZombieJob: --- 10, [3558340]
[2025-06-04 09:05:56] 2025-06-04 13:05:36,556 | INFO     | zombie collector waiting for pid 3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:36,556 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:05:56] 2025-06-04 13:05:36,556 | INFO     | collected zombie processes
[2025-06-04 09:05:56] 2025-06-04 13:05:36,556 | INFO     | will attempt to kill all subprocesses of pid=3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:37,093 | INFO     | process IDs to be killed: [3558340] (in reverse order)
[2025-06-04 09:05:56] 2025-06-04 13:05:37,310 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:05:56] 2025-06-04 13:05:37,311 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:05:56] 2025-06-04 13:05:37,345 | INFO     | did not find any defunct processes belonging to 3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:37,378 | INFO     | did not find any defunct processes belonging to 3558340
[2025-06-04 09:05:56] 2025-06-04 13:05:37,379 | INFO     | ready for new job
[2025-06-04 09:05:56] 2025-06-04 13:05:37,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:05:56] 2025-06-04 13:05:37,380 | INFO     | **************************************
[2025-06-04 09:05:56] 2025-06-04 13:05:37,380 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:05:56] 2025-06-04 13:05:37,380 | INFO     | **************************************
[2025-06-04 09:05:56] 2025-06-04 13:05:37,380 | INFO     | 
[2025-06-04 09:05:56] 2025-06-04 13:05:37,398 | INFO     | architecture information:
[2025-06-04 09:05:56] 2025-06-04 13:05:37,398 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:05:56] 2025-06-04 13:05:37,414 | INFO     | cat /etc/os-release:
[2025-06-04 09:05:56] NAME="CentOS Linux"
[2025-06-04 09:05:56] VERSION="7 (Core)"
[2025-06-04 09:05:56] ID="centos"
[2025-06-04 09:05:56] ID_LIKE="rhel fedora"
[2025-06-04 09:05:56] VERSION_ID="7"
[2025-06-04 09:05:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:05:56] ANSI_COLOR="0;31"
[2025-06-04 09:05:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:05:56] HOME_URL="https://www.centos.org/"
[2025-06-04 09:05:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:05:56] 
[2025-06-04 09:05:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:05:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:05:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:05:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:05:56] 
[2025-06-04 09:05:56] 2025-06-04 13:05:37,415 | INFO     | **************************************
[2025-06-04 09:05:56] 2025-06-04 13:05:37,918 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 09:05:56] 2025-06-04 13:05:37,936 | INFO     | sufficient remaining disk space (172007358464 B)
[2025-06-04 09:05:56] 2025-06-04 13:05:37,936 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:05:56] 2025-06-04 13:05:37,936 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:05:56] 2025-06-04 13:05:37,937 | INFO     | update_server=False
[2025-06-04 09:05:56] 2025-06-04 13:05:37,937 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:05:56] 2025-06-04 13:05:37,937 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:05:56] 2025-06-04 13:05:37,937 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:05:56] 2025-06-04 13:05:37,937 | INFO     | aborting loop
[2025-06-04 09:05:56] 2025-06-04 13:05:37,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:05:56] 2025-06-04 13:05:37,938 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:05:56] 2025-06-04 13:05:37,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:05:56] 2025-06-04 13:05:37,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:05:56] 2025-06-04 13:05:37,977 | INFO     | all payload control threads have been joined
[2025-06-04 09:05:56] 2025-06-04 13:05:38,047 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:05:56] 2025-06-04 13:05:38,885 | INFO     | all data control threads have been joined
[2025-06-04 09:05:56] 2025-06-04 13:05:38,943 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:38,943 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:38,983 | INFO     | [payload] control thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,084 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,110 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,318 | INFO     | all job control threads have been joined
[2025-06-04 09:05:56] 2025-06-04 13:05:39,429 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,665 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,859 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,866 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:39,892 | INFO     | [data] control thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:40,053 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:40,057 | INFO     | [job] validate thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:40,324 | INFO     | [job] control thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:40,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:05:56] 2025-06-04 13:05:41,542 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:41,943 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:48,696 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:05:56] 2025-06-04 13:05:49,701 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:05:56] 2025-06-04 13:05:50,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725893785408)>', '<ExcThread(monitor, started 139725394396928)>']
[2025-06-04 09:05:56] 2025-06-04 13:05:51,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:05:56] 2025-06-04 13:05:51,004 | INFO     | [monitor] control thread has ended
[2025-06-04 09:05:56] 2025-06-04 13:05:55,681 | INFO     | all workflow threads have been joined
[2025-06-04 09:05:56] 2025-06-04 13:05:55,681 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:05:56] 2025-06-04 13:05:55,681 | INFO     | traces error code: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:55,681 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:05:56] 2025-06-04 13:05:55,813 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:05:56] 2025-06-04 13:05:55,814 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:05:56] 2025-06-04 13:05:55,816 [wrapper] pilotpid: 3525294
[2025-06-04 09:05:56] 2025-06-04 13:05:55,818 [wrapper] Pilot exit status: 0
[2025-06-04 09:05:56] 2025-06-04 13:05:55,826 [wrapper] pandaids: 6678390279
[2025-06-04 09:05:56] 2025-06-04 13:05:55,975 [wrapper] cleanup supervisor_pilot  689018 3525295
[2025-06-04 09:05:56] 2025-06-04 13:05:55,978 [wrapper] Test setup, not cleaning
[2025-06-04 09:05:56] 2025-06-04 13:05:55,980 [wrapper] apfmon messages muted
[2025-06-04 09:05:56] 2025-06-04 13:05:55,983 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:05:56] 2025-06-04 13:05:55,985 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:05:56]  *** Error codes and diagnostics ***
[2025-06-04 09:05:56]     "exeErrorCode": 0,
[2025-06-04 09:05:56]     "exeErrorDiag": "",
[2025-06-04 09:05:56]     "pilotErrorCode": 0,
[2025-06-04 09:05:56]     "pilotErrorDiag": "",
[2025-06-04 09:05:56]  *** Listing of results directory ***
[2025-06-04 09:05:56] total 389480
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:24 queuedata.json
[2025-06-04 09:05:56] -rwx------. 1 boincer umatlas     37140 Jun  4 03:25 runpilot2-wrapper.sh
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:05:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:13 run_atlas
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:13 job.xml
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas 214969492 Jun  4 08:13 EVNT.45006593._002190.pool.root.1
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:13 start_atlas.sh
[2025-06-04 09:05:56] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:13 shared
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 08:13 input.tar.gz
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:13 boinc_lockfile
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 08:13 pandaJob.out
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas    986812 Jun  4 08:13 agis_schedconf.cvmfs.json
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:13 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:05:56] drwx------. 4 boincer umatlas      4096 Jun  4 08:13 pilot3
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas      7159 Jun  4 09:02 init_data.xml
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas        95 Jun  4 09:04 pilot_heartbeat.json
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas 178816613 Jun  4 09:05 HITS.45006595._054730.pool.root.1
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:05 boinc_task_state.xml
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas      1039 Jun  4 09:05 memory_monitor_summary.json
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas    282848 Jun  4 09:05 log.45006595._054730.job.log.tgz.1
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas      7694 Jun  4 09:05 heartbeat.json
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:05 wrapper_checkpoint.txt
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:05 boinc_mmap_file
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas      4549 Jun  4 09:05 pilotlog.txt
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas    321168 Jun  4 09:05 log.45006595._054730.job.log.1
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas       357 Jun  4 09:05 output.list
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:05 runtime_log
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas    624640 Jun  4 09:05 result.tar.gz
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas       649 Jun  4 09:05 Z7BNDmDgxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrbnKDmbIeZUn.diag
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 09:05 runtime_log.err
[2025-06-04 09:05:56] -rw-r--r--. 1 boincer umatlas     21866 Jun  4 09:05 stderr.txt
[2025-06-04 09:05:56] HITS file was successfully produced:
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas 178816613 Jun  4 09:05 shared/HITS.pool.root.1
[2025-06-04 09:05:56]  *** Contents of shared directory: ***
[2025-06-04 09:05:56] total 385692
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas 214969492 Jun  4 08:13 ATLAS.root_0
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:13 start_atlas.sh
[2025-06-04 09:05:56] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 08:13 input.tar.gz
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas 178816613 Jun  4 09:05 HITS.pool.root.1
[2025-06-04 09:05:56] -rw-------. 1 boincer umatlas    624640 Jun  4 09:05 result.tar.gz
09:05:57 (3516489): run_atlas exited; CPU time 19619.447580
09:05:57 (3516489): called boinc_finish(0)

</stderr_txt>
]]>

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