Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:41:37 (3862719): wrapper (7.7.26015): starting
01:41:37 (3862719): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 01:41:37] Arguments: --nthreads 12
[2025-06-05 01:41:37] Threads: 12
[2025-06-05 01:41:37] Checking for CVMFS
[2025-06-05 01:41:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:41:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:41:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:41:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:41:37] 2.12.7.0 8631 8162 94460 146798 3 187 43173291 46080001 922 130560 0 11772197 99.997 965842 16561 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-06-05 01:41:37] CVMFS is ok
[2025-06-05 01:41:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 01:41:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 01:41:37] Further information can be found at the LHC@home message board.
[2025-06-05 01:41:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:41:37] Checking for apptainer binary...
[2025-06-05 01:41:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:41:37] Running /usr/bin/apptainer --version
[2025-06-05 01:41:37] apptainer version 1.4.1-1.el9
[2025-06-05 01:41:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:41:37] gpu01.farm.particle.cz
[2025-06-05 01:41:37] apptainer works
[2025-06-05 01:41:37] Set ATHENA_PROC_NUMBER=12
[2025-06-05 01:41:37] Set ATHENA_CORE_NUMBER=12
[2025-06-05 01:41:37] Starting ATLAS job with PandaID=6678390324
[2025-06-05 01:41:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:19:56]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:19:56]  is_tar=False
[2025-06-05 02:19:56]  lfn=log.45006595._054775.job.log.tgz.1
[2025-06-05 02:19:56]  mtime=0
[2025-06-05 02:19:56]  protocol_id=None
[2025-06-05 02:19:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-05 02:19:56]  replicas=None
[2025-06-05 02:19:56]  scope=mc23_13p6TeV
[2025-06-05 02:19:56]  status=None
[2025-06-05 02:19:56]  status_code=0
[2025-06-05 02:19:56]  storage_token=
[2025-06-05 02:19:56]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6678390324/log.45006595._054775.job.log.tgz.1
[2025-06-05 02:19:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/a6/log.45006595._054775.job.log.tgz.1
[2025-06-05 02:19:56]  workdir=None
[2025-06-05 02:19:56] ]
[2025-06-05 02:19:56] 2025-06-05 00:19:29,018 | INFO     | transferring file log.45006595._054775.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6678390324/log.45006595._054775.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-05 02:19:56] 2025-06-05 00:19:29,018 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6678390324/log.45006595._054775.job.log.tgz.1 /var/lib/boinc/slots/1/log.45006595._054775.job
[2025-06-05 02:19:56] 2025-06-05 00:19:29,032 | INFO     | adding to output.list: log.45006595._054775.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4f/a6/log.45006595._054775.job.log.tg
[2025-06-05 02:19:56] 2025-06-05 00:19:29,032 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-05 02:19:56] 2025-06-05 00:19:29,032 | INFO     | summary of transferred files:
[2025-06-05 02:19:56] 2025-06-05 00:19:29,032 | INFO     |  -- lfn=log.45006595._054775.job.log.tgz.1, status_code=0, status=transferred
[2025-06-05 02:19:56] 2025-06-05 00:19:29,032 | INFO     | stage-out finished correctly
[2025-06-05 02:19:56] 2025-06-05 00:19:30,011 | INFO     | PID=3866519 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 02:19:56] 2025-06-05 00:19:30,011 | INFO     | .. there are 2 such processes running
[2025-06-05 02:19:56] 2025-06-05 00:19:30,098 | INFO     | monitor loop #175: job 0:6678390324 is in state 'finished'
[2025-06-05 02:19:56] 2025-06-05 00:19:30,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:19:56] 2025-06-05 00:19:31,617 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-05 02:19:56] 2025-06-05 00:19:32,601 | INFO     | monitor loop #176: job 0:6678390324 is in state 'finished'
[2025-06-05 02:19:56] 2025-06-05 00:19:32,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:19:56] 2025-06-05 00:19:34,024 | INFO     | job 6678390324 has state=finished
[2025-06-05 02:19:56] 2025-06-05 00:19:34,024 | INFO     | preparing for final server update for job 6678390324 in state='finished'
[2025-06-05 02:19:56] 2025-06-05 00:19:34,024 | INFO     | this job has now completed (state=finished)
[2025-06-05 02:19:56] 2025-06-05 00:19:34,025 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-05 02:19:56] 2025-06-05 00:19:34,025 | INFO     | log transfer has been attempted: DONE
[2025-06-05 02:19:56] 2025-06-05 00:19:34,025 | INFO     | job 6678390324 has finished - writing final server update
[2025-06-05 02:19:56] 2025-06-05 00:19:34,025 | INFO     | total number of processed events: 400 (read)
[2025-06-05 02:19:56] 2025-06-05 00:19:34,027 | INFO     | executing command: lscpu
[2025-06-05 02:19:56] 2025-06-05 00:19:34,056 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-05 02:19:56] 2025-06-05 00:19:35,105 | INFO     | monitor loop #177: job 0:6678390324 is in state 'finished'
[2025-06-05 02:19:56] 2025-06-05 00:19:35,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,716 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 02:19:56] 2025-06-05 00:19:36,716 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6678390324/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,717 | INFO     | extracted standard info from prmon json
[2025-06-05 02:19:56] 2025-06-05 00:19:36,717 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:19:56] 2025-06-05 00:19:36,717 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:19:56] 2025-06-05 00:19:36,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:19:56] 2025-06-05 00:19:36,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | sum of square deviations: 8362947.5
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | sum of deviations: 379853923.50000006
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | mean x: 1749081715.5
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | mean y: 2919424.9
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | -- intersect: -79442222632.34547
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | intersect: -79442222632.34547
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | chi2: 0.006397272737232148
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | -- intersect: -79442222632.34547
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | current memory leak: 45.42 B/s (using 30 data points, chi2=0.01)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,718 | INFO     | ..............................
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . Timing measurements:
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . get job = 0 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . initial setup = 1 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . payload setup = 4 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . stage-in = 0 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . payload execution = 2242 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . stage-out = 0 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | . log creation = 0 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,719 | INFO     | ..............................
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | 
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | job summary report
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | --------------------------------------------------
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | PanDA job id: 6678390324
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | task id: 45006595
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | errors: (none)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | pilot state: finished 
[2025-06-05 02:19:56] 2025-06-05 00:19:36,772 | INFO     | transexitcode: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | exeerrorcode: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | exeerrordiag: 
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | exitcode: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | exitmsg: OK
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | cpuconsumptiontime: 23650 s
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | nevents: 400
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | neventsw: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | pid: 3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | pgrp: 3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | corecount: 12
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | event service: False
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | sizes: {0: 2397340, 3: 2397546, 11: 2397574, 2251: 2431587, 2254: 2431587, 2259: 2431757}
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | --------------------------------------------------
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | 
[2025-06-05 02:19:56] 2025-06-05 00:19:36,773 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-05 02:19:56] 2025-06-05 00:19:36,786 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,787 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | job 6678390324 has completed (purged errors)
[2025-06-05 02:19:56] 2025-06-05 00:19:36,788 | INFO     | overall cleanup function is called
[2025-06-05 02:19:56] 2025-06-05 00:19:37,796 | INFO     | --- collectZombieJob: --- 10, [3873857]
[2025-06-05 02:19:56] 2025-06-05 00:19:37,796 | INFO     | zombie collector waiting for pid 3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:37,796 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:19:56] 2025-06-05 00:19:37,796 | INFO     | collected zombie processes
[2025-06-05 02:19:56] 2025-06-05 00:19:37,797 | INFO     | will attempt to kill all subprocesses of pid=3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:37,888 | INFO     | process IDs to be killed: [3873857] (in reverse order)
[2025-06-05 02:19:56] 2025-06-05 00:19:37,926 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:19:56] 2025-06-05 00:19:37,926 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:19:56] 2025-06-05 00:19:37,930 | INFO     | did not find any defunct processes belonging to 3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:37,932 | INFO     | did not find any defunct processes belonging to 3873857
[2025-06-05 02:19:56] 2025-06-05 00:19:37,932 | INFO     | ready for new job
[2025-06-05 02:19:56] 2025-06-05 00:19:37,932 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:19:56] 2025-06-05 00:19:37,933 | INFO     | **************************************
[2025-06-05 02:19:56] 2025-06-05 00:19:37,933 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:19:56] 2025-06-05 00:19:37,933 | INFO     | **************************************
[2025-06-05 02:19:56] 2025-06-05 00:19:37,933 | INFO     | 
[2025-06-05 02:19:56] 2025-06-05 00:19:37,935 | INFO     | architecture information:
[2025-06-05 02:19:56] 2025-06-05 00:19:37,935 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:19:56] 2025-06-05 00:19:37,945 | INFO     | cat /etc/os-release:
[2025-06-05 02:19:56] NAME="CentOS Linux"
[2025-06-05 02:19:56] VERSION="7 (Core)"
[2025-06-05 02:19:56] ID="centos"
[2025-06-05 02:19:56] ID_LIKE="rhel fedora"
[2025-06-05 02:19:56] VERSION_ID="7"
[2025-06-05 02:19:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:19:56] ANSI_COLOR="0;31"
[2025-06-05 02:19:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:19:56] HOME_URL="https://www.centos.org/"
[2025-06-05 02:19:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:19:56] 
[2025-06-05 02:19:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:19:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:19:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:19:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:19:56] 
[2025-06-05 02:19:56] 2025-06-05 00:19:37,946 | INFO     | **************************************
[2025-06-05 02:19:56] 2025-06-05 00:19:38,448 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | INFO     | sufficient remaining disk space (68710039552 B)
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | INFO     | update_server=False
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:19:56] 2025-06-05 00:19:38,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:19:56] 2025-06-05 00:19:38,462 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:19:56] 2025-06-05 00:19:38,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:19:56] 2025-06-05 00:19:38,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:19:56] 2025-06-05 00:19:38,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:19:56] 2025-06-05 00:19:38,609 | INFO     | aborting loop
[2025-06-05 02:19:56] 2025-06-05 00:19:39,278 | INFO     | all data control threads have been joined
[2025-06-05 02:19:56] 2025-06-05 00:19:39,466 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:39,467 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:39,483 | INFO     | all job control threads have been joined
[2025-06-05 02:19:56] 2025-06-05 00:19:39,496 | INFO     | all payload control threads have been joined
[2025-06-05 02:19:56] 2025-06-05 00:19:39,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:19:56] 2025-06-05 00:19:39,614 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:39,899 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,039 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,283 | INFO     | [data] control thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,488 | INFO     | [job] control thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,501 | INFO     | [payload] control thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,584 | INFO     | [job] validate thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,625 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,807 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,839 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:40,850 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:41,604 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:42,468 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:48,529 | INFO     | job.realtimelogging is not enabled
[2025-06-05 02:19:56] 2025-06-05 00:19:49,534 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:19:56] 2025-06-05 00:19:50,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140294677776192)>', '<ExcThread(monitor, started 140294326560512)>']
[2025-06-05 02:19:56] 2025-06-05 00:19:51,524 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:19:56] 2025-06-05 00:19:51,524 | INFO     | [monitor] control thread has ended
[2025-06-05 02:19:56] 2025-06-05 00:19:55,991 | INFO     | all workflow threads have been joined
[2025-06-05 02:19:56] 2025-06-05 00:19:55,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:19:56] 2025-06-05 00:19:55,992 | INFO     | traces error code: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:55,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:19:56] 2025-06-05 00:19:56,079 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:19:56] 2025-06-05 00:19:56,081 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:19:56] 2025-06-05 00:19:56,083 [wrapper] pilotpid: 3866519
[2025-06-05 02:19:56] 2025-06-05 00:19:56,084 [wrapper] Pilot exit status: 0
[2025-06-05 02:19:56] 2025-06-05 00:19:56,092 [wrapper] pandaids: 6678390324
[2025-06-05 02:19:56] 2025-06-05 00:19:56,121 [wrapper] cleanup supervisor_pilot 3916412 3866520
[2025-06-05 02:19:56] 2025-06-05 00:19:56,123 [wrapper] Test setup, not cleaning
[2025-06-05 02:19:56] 2025-06-05 00:19:56,125 [wrapper] apfmon messages muted
[2025-06-05 02:19:56] 2025-06-05 00:19:56,127 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:19:56] 2025-06-05 00:19:56,129 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:19:56]  *** Error codes and diagnostics ***
[2025-06-05 02:19:56]     "exeErrorCode": 0,
[2025-06-05 02:19:56]     "exeErrorDiag": "",
[2025-06-05 02:19:56]     "pilotErrorCode": 0,
[2025-06-05 02:19:56]     "pilotErrorDiag": "",
[2025-06-05 02:19:56]  *** Listing of results directory ***
[2025-06-05 02:19:56] total 397848
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc    495897 Jun  4 09:04 pilot3.tar.gz
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc      5111 Jun  4 09:27 queuedata.json
[2025-06-05 02:19:56] -rwx------ 1 boinc boinc     37140 Jun  4 09:28 runpilot2-wrapper.sh
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc       100 Jun  5 01:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:19:56] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 01:41 run_atlas
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc       105 Jun  5 01:41 job.xml
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc      9445 Jun  5 01:41 init_data.xml
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc 218450694 Jun  5 01:41 EVNT.45006593._002192.pool.root.1
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc     15093 Jun  5 01:41 start_atlas.sh
[2025-06-05 02:19:56] drwxrwx--x 2 boinc boinc      4096 Jun  5 01:41 shared
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc    508881 Jun  5 01:41 input.tar.gz
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc         0 Jun  5 01:41 boinc_lockfile
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc      2524 Jun  5 01:41 pandaJob.out
[2025-06-05 02:19:56] -rw------- 1 boinc boinc    987117 Jun  5 01:41 agis_schedconf.cvmfs.json
[2025-06-05 02:19:56] -rw------- 1 boinc boinc   1598969 Jun  5 01:41 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:19:56] drwx------ 4 boinc boinc      4096 Jun  5 01:41 pilot3
[2025-06-05 02:19:56] -rw------- 1 boinc boinc        95 Jun  5 02:19 pilot_heartbeat.json
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc       529 Jun  5 02:19 boinc_task_state.xml
[2025-06-05 02:19:56] -rw------- 1 boinc boinc 183937164 Jun  5 02:19 HITS.45006595._054775.pool.root.1
[2025-06-05 02:19:56] -rw------- 1 boinc boinc      1011 Jun  5 02:19 memory_monitor_summary.json
[2025-06-05 02:19:56] -rw------- 1 boinc boinc    327946 Jun  5 02:19 log.45006595._054775.job.log.tgz.1
[2025-06-05 02:19:56] -rw------- 1 boinc boinc      7681 Jun  5 02:19 heartbeat.json
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc      8192 Jun  5 02:19 boinc_mmap_file
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc        27 Jun  5 02:19 wrapper_checkpoint.txt
[2025-06-05 02:19:56] -rw------- 1 boinc boinc      4548 Jun  5 02:19 pilotlog.txt
[2025-06-05 02:19:56] -rw------- 1 boinc boinc    254267 Jun  5 02:19 log.45006595._054775.job.log.1
[2025-06-05 02:19:56] -rw------- 1 boinc boinc       357 Jun  5 02:19 output.list
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc       620 Jun  5 02:19 runtime_log
[2025-06-05 02:19:56] -rw------- 1 boinc boinc    604160 Jun  5 02:19 result.tar.gz
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc      8696 Jun  5 02:19 runtime_log.err
[2025-06-05 02:19:56] -rw------- 1 boinc boinc       658 Jun  5 02:19 9OjMDmJjxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOcnKDmJNm4Io.diag
[2025-06-05 02:19:56] -rw-r--r-- 1 boinc boinc     21551 Jun  5 02:19 stderr.txt
[2025-06-05 02:19:56] HITS file was successfully produced:
[2025-06-05 02:19:56] -rw------- 1 boinc boinc 183937164 Jun  5 02:19 shared/HITS.pool.root.1
[2025-06-05 02:19:56]  *** Contents of shared directory: ***
[2025-06-05 02:19:56] total 394076
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc 218450694 Jun  5 01:41 ATLAS.root_0
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc     15093 Jun  5 01:41 start_atlas.sh
[2025-06-05 02:19:56] -rw-r--r-- 2 boinc boinc    508881 Jun  5 01:41 input.tar.gz
[2025-06-05 02:19:56] -rw------- 1 boinc boinc 183937164 Jun  5 02:19 HITS.pool.root.1
[2025-06-05 02:19:56] -rw------- 1 boinc boinc    604160 Jun  5 02:19 result.tar.gz
02:19:57 (3862719): run_atlas exited; CPU time 23660.427184
02:19:57 (3862719): called boinc_finish(0)

</stderr_txt>
]]>

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