Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:34 (21525): wrapper (7.7.26015): starting
01:38:34 (21525): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:38:34] Arguments: --nthreads 8
[2025-06-05 01:38:34] Threads: 8
[2025-06-05 01:38:34] Checking for CVMFS
[2025-06-05 01:38:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:38:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:38:36] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:38:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:38:37] 2.11.2.0 12075 33872 88912 146798 1 201 14362271 25165824 4019 130560 0 18071064 99.775 20771127 2192 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:38:37] CVMFS is ok
[2025-06-05 01:38:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:38:37] Checking for apptainer binary...
[2025-06-05 01:38:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:38:37] Running /usr/bin/apptainer --version
[2025-06-05 01:38:37] apptainer version 1.3.2-1.el7
[2025-06-05 01:38:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:38:50] cg-vwn258.simple-grid.lan
[2025-06-05 01:38:50] apptainer works
[2025-06-05 01:38:50] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:38:50] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:38:50] Starting ATLAS job with PandaID=6678362596
[2025-06-05 01:38:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 12:43:08]  *** The last 200 lines of the pilot log: ***
[2025-06-05 12:43:08] 2025-06-05 03:18:23,020 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 12:43:08] 2025-06-05 03:18:23,020 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 12:43:08] 2025-06-05 03:18:23,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 12:43:08] 2025-06-05 03:18:23,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 12:43:08] 2025-06-05 03:18:23,025 | INFO     | fitting pss+swap vs Time
[2025-06-05 12:43:08] 2025-06-05 03:18:23,026 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 12:43:08] 2025-06-05 03:18:23,028 | INFO     | sum of deviations: -30535022357.000015
[2025-06-05 12:43:08] 2025-06-05 03:18:23,028 | INFO     | mean x: 1749086902.5
[2025-06-05 12:43:08] 2025-06-05 03:18:23,028 | INFO     | mean y: 2480477.9439252336
[2025-06-05 12:43:08] 2025-06-05 03:18:23,028 | INFO     | -- intersect: 17577643793.497955
[2025-06-05 12:43:08] 2025-06-05 03:18:23,029 | INFO     | intersect: 17577643793.497955
[2025-06-05 12:43:08] 2025-06-05 03:18:23,029 | INFO     | chi2: 3.4376295589854164
[2025-06-05 12:43:08] 2025-06-05 03:18:23,029 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,031 | INFO     | sum of deviations: -1369564496.9999945
[2025-06-05 12:43:08] 2025-06-05 03:18:23,031 | INFO     | mean x: 1749086750.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,031 | INFO     | mean y: 2501555.751196172
[2025-06-05 12:43:08] 2025-06-05 03:18:23,032 | INFO     | -- intersect: 848727818.1283702
[2025-06-05 12:43:08] 2025-06-05 03:18:23,032 | INFO     | intersect: 848727818.1283702
[2025-06-05 12:43:08] 2025-06-05 03:18:23,032 | INFO     | chi2: 1.8041842039488918
[2025-06-05 12:43:08] 2025-06-05 03:18:23,032 | INFO     | current chi2=1.8041842039488918 (change=47.51661943233408 %)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,033 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | sum of deviations: -1378853668.500005
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | mean x: 1749086597.5
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | mean y: 2501549.593137255
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | -- intersect: 918660862.2833806
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | intersect: 918660862.2833806
[2025-06-05 12:43:08] 2025-06-05 03:18:23,035 | INFO     | chi2: 1.8039386993835216
[2025-06-05 12:43:08] 2025-06-05 03:18:23,036 | INFO     | current chi2=1.8039386993835216 (change=0.013607511075247011 %)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,036 | INFO     | right removable region: 203
[2025-06-05 12:43:08] 2025-06-05 03:18:23,036 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,038 | INFO     | sum of deviations: -66420285478.99999
[2025-06-05 12:43:08] 2025-06-05 03:18:23,038 | INFO     | mean x: 1749087055.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,038 | INFO     | mean y: 2506543.698564593
[2025-06-05 12:43:08] 2025-06-05 03:18:23,038 | INFO     | -- intersect: 41042267614.57841
[2025-06-05 12:43:08] 2025-06-05 03:18:23,038 | INFO     | intersect: 41042267614.57841
[2025-06-05 12:43:08] 2025-06-05 03:18:23,039 | INFO     | chi2: 1.8803509382453323
[2025-06-05 12:43:08] 2025-06-05 03:18:23,039 | INFO     | current chi2=1.8803509382453323 (change=45.30094339774353 %)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,039 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,041 | INFO     | sum of deviations: -61995955967.000015
[2025-06-05 12:43:08] 2025-06-05 03:18:23,041 | INFO     | mean x: 1749087207.5
[2025-06-05 12:43:08] 2025-06-05 03:18:23,041 | INFO     | mean y: 2503111.8235294116
[2025-06-05 12:43:08] 2025-06-05 03:18:23,041 | INFO     | -- intersect: 41194830850.740654
[2025-06-05 12:43:08] 2025-06-05 03:18:23,041 | INFO     | intersect: 41194830850.740654
[2025-06-05 12:43:08] 2025-06-05 03:18:23,042 | INFO     | chi2: 1.8709821438285739
[2025-06-05 12:43:08] 2025-06-05 03:18:23,042 | INFO     | current chi2=1.8709821438285739 (change=0.4982471211199012 %)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,042 | INFO     | left removable region: 20
[2025-06-05 12:43:08] 2025-06-05 03:18:23,043 | INFO     | sum of square deviations: 1900284932.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,044 | INFO     | sum of deviations: -19522329528.999992
[2025-06-05 12:43:08] 2025-06-05 03:18:23,044 | INFO     | mean x: 1749087177.0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,044 | INFO     | mean y: 2514436.7213114756
[2025-06-05 12:43:08] 2025-06-05 03:18:23,044 | INFO     | -- intersect: 17971533539.769344
[2025-06-05 12:43:08] 2025-06-05 03:18:23,044 | INFO     | intersect: 17971533539.769344
[2025-06-05 12:43:08] 2025-06-05 03:18:23,045 | INFO     | chi2: 0.14491837835336416
[2025-06-05 12:43:08] 2025-06-05 03:18:23,045 | INFO     | -- intersect: 17971533539.769344
[2025-06-05 12:43:08] 2025-06-05 03:18:23,045 | INFO     | current memory leak: -10.27 B/s (using 183 data points, chi2=0.14)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,046 | INFO     | ..............................
[2025-06-05 12:43:08] 2025-06-05 03:18:23,046 | INFO     | . Timing measurements:
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . get job = 0 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . initial setup = 3 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . payload setup = 13 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . stage-in = 0 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . payload execution = 13016 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . stage-out = 3 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | . log creation = 1 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,047 | INFO     | ..............................
[2025-06-05 12:43:08] 2025-06-05 03:18:23,179 | INFO     | 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | job summary report
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | --------------------------------------------------
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | PanDA job id: 6678362596
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | task id: 45006595
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | errors: (none)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | pilot state: finished 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,180 | INFO     | transexitcode: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | exeerrorcode: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | exeerrordiag: 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | exitcode: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | exitmsg: OK
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | cpuconsumptiontime: 49551 s
[2025-06-05 12:43:08] 2025-06-05 03:18:23,181 | INFO     | nevents: 400
[2025-06-05 12:43:08] 2025-06-05 03:18:23,186 | INFO     | neventsw: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | pid: 1308
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | pgrp: 1308
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | corecount: 8
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | event service: False
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | sizes: {0: 2396514, 1: 2397199, 2: 2397398, 10: 2397604, 12: 2397632, 13034: 2427062, 13038: 2436003, 13039: 2436059, 13133: 2436229}
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | --------------------------------------------------
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,187 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 12:43:08] 2025-06-05 03:18:23,598 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 12:43:08] 2025-06-05 03:18:23,600 | INFO     | job 6678362596 has completed (purged errors)
[2025-06-05 12:43:08] 2025-06-05 03:18:23,601 | INFO     | overall cleanup function is called
[2025-06-05 12:43:08] 2025-06-05 03:18:23,835 | INFO     | PID=25518 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 12:43:08] 2025-06-05 03:18:23,836 | INFO     | .. there are 9 such processes running
[2025-06-05 12:43:08] 2025-06-05 03:18:24,610 | INFO     | --- collectZombieJob: --- 10, [1308]
[2025-06-05 12:43:08] 2025-06-05 03:18:24,611 | INFO     | zombie collector waiting for pid 1308
[2025-06-05 12:43:08] 2025-06-05 03:18:24,611 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 12:43:08] 2025-06-05 03:18:24,611 | INFO     | collected zombie processes
[2025-06-05 12:43:08] 2025-06-05 03:18:24,611 | INFO     | will attempt to kill all subprocesses of pid=1308
[2025-06-05 12:43:08] 2025-06-05 03:18:24,737 | INFO     | process IDs to be killed: [1308] (in reverse order)
[2025-06-05 12:43:08] 2025-06-05 03:18:24,859 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 12:43:08] 2025-06-05 03:18:24,860 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 12:43:08] 2025-06-05 03:18:24,863 | INFO     | did not find any defunct processes belonging to 1308
[2025-06-05 12:43:08] 2025-06-05 03:18:24,866 | INFO     | did not find any defunct processes belonging to 1308
[2025-06-05 12:43:08] 2025-06-05 03:18:24,866 | INFO     | ready for new job
[2025-06-05 12:43:08] 2025-06-05 03:18:24,866 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 12:43:08] 2025-06-05 03:18:24,868 | INFO     | **************************************
[2025-06-05 12:43:08] 2025-06-05 03:18:24,869 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 12:43:08] 2025-06-05 03:18:24,869 | INFO     | **************************************
[2025-06-05 12:43:08] 2025-06-05 03:18:24,869 | INFO     | 
[2025-06-05 12:43:08] 2025-06-05 03:18:24,869 | INFO     | pilot is running in a VM
[2025-06-05 12:43:08] 2025-06-05 03:18:24,870 | INFO     | architecture information:
[2025-06-05 12:43:08] 2025-06-05 03:18:24,870 | INFO     | executing command: cat /etc/os-release
[2025-06-05 12:43:08] 2025-06-05 03:18:24,959 | INFO     | cat /etc/os-release:
[2025-06-05 12:43:08] NAME="CentOS Linux"
[2025-06-05 12:43:08] VERSION="7 (Core)"
[2025-06-05 12:43:08] ID="centos"
[2025-06-05 12:43:08] ID_LIKE="rhel fedora"
[2025-06-05 12:43:08] VERSION_ID="7"
[2025-06-05 12:43:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 12:43:08] ANSI_COLOR="0;31"
[2025-06-05 12:43:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 12:43:08] HOME_URL="https://www.centos.org/"
[2025-06-05 12:43:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 12:43:08] 
[2025-06-05 12:43:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 12:43:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 12:43:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 12:43:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 12:43:08] 
[2025-06-05 12:43:08] 2025-06-05 03:18:24,959 | INFO     | **************************************
[2025-06-05 12:43:08] 2025-06-05 03:18:25,462 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 12:43:08] 2025-06-05 03:18:25,601 | INFO     | sufficient remaining disk space (497113104384 B)
[2025-06-05 12:43:08] 2025-06-05 03:18:25,601 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 12:43:08] 2025-06-05 03:18:25,601 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 12:43:08] 2025-06-05 03:18:25,601 | INFO     | update_server=False
[2025-06-05 12:43:08] 2025-06-05 03:18:25,601 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 12:43:08] 2025-06-05 03:18:25,602 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 12:43:08] 2025-06-05 03:18:25,826 | INFO     | all payload control threads have been joined
[2025-06-05 12:43:08] 2025-06-05 03:18:25,843 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 12:43:08] 2025-06-05 03:18:25,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 12:43:08] 2025-06-05 03:18:25,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 12:43:08] 2025-06-05 03:18:26,088 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 12:43:08] 2025-06-05 03:18:26,461 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:43:08] 2025-06-05 03:18:26,462 | INFO     | aborting loop
[2025-06-05 12:43:08] 2025-06-05 03:18:26,495 | INFO     | all job control threads have been joined
[2025-06-05 12:43:08] 2025-06-05 03:18:26,597 | INFO     | all data control threads have been joined
[2025-06-05 12:43:08] 2025-06-05 03:18:26,608 | INFO     | [job] retrieve thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:26,742 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:26,832 | INFO     | [payload] control thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,011 | INFO     | [job] validate thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,024 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,468 | INFO     | [job] job monitor thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,501 | INFO     | [job] control thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,533 | INFO     | [data] copytool_in thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,569 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,603 | INFO     | [data] control thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,609 | INFO     | [data] copytool_out thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:27,638 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:28,078 | INFO     | [payload] validate_post thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:28,139 | INFO     | [payload] failed_post thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:28,193 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 12:43:08] 2025-06-05 03:18:29,199 | INFO     | [job] queue monitor thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:30,097 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 12:43:08] 2025-06-05 03:18:32,070 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076446852928)>', '<ExcThread(monitor, started 140076147250944)>']
[2025-06-05 12:43:08] 2025-06-05 03:18:32,885 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 12:43:08] 2025-06-05 03:18:32,886 | INFO     | [monitor] control thread has ended
[2025-06-05 12:43:08] 2025-06-05 03:18:37,096 | INFO     | all workflow threads have been joined
[2025-06-05 12:43:08] 2025-06-05 03:18:37,097 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 12:43:08] 2025-06-05 03:18:37,097 | INFO     | traces error code: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:37,097 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 12:43:08] 2025-06-05 03:18:37,364 [wrapper] ==== pilot stdout END ====
[2025-06-05 12:43:08] 2025-06-05 03:18:37,377 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 12:43:08] 2025-06-05 03:18:37,393 [wrapper] pilotpid: 25518
[2025-06-05 12:43:08] 2025-06-05 03:18:37,403 [wrapper] Pilot exit status: 0
[2025-06-05 12:43:08] 2025-06-05 03:18:37,515 [wrapper] pandaids: 6678362596
[2025-06-05 12:43:08] 2025-06-05 03:18:38,401 [wrapper] cleanup supervisor_pilot  5887 25519
[2025-06-05 12:43:08] 2025-06-05 03:18:38,514 [wrapper] Test setup, not cleaning
[2025-06-05 12:43:08] 2025-06-05 03:18:38,569 [wrapper] apfmon messages muted
[2025-06-05 12:43:08] 2025-06-05 03:18:38,664 [wrapper] ==== wrapper stdout END ====
[2025-06-05 12:43:08] 2025-06-05 03:18:38,713 [wrapper] ==== wrapper stderr END ====
[2025-06-05 12:43:08]  *** Error codes and diagnostics ***
[2025-06-05 12:43:08]     "exeErrorCode": 0,
[2025-06-05 12:43:08]     "exeErrorDiag": "",
[2025-06-05 12:43:08]     "pilotErrorCode": 0,
[2025-06-05 12:43:08]     "pilotErrorDiag": "",
[2025-06-05 12:43:08]  *** Listing of results directory ***
[2025-06-05 12:43:08] total 391168
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:12 queuedata.json
[2025-06-05 12:43:08] -rwx------. 1 boinc boinc     37140 Jun  4 07:12 runpilot2-wrapper.sh
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 12:43:08] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:38 run_atlas
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:38 job.xml
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc      6390 Jun  5 01:38 init_data.xml
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc 215964357 Jun  5 01:38 EVNT.45006593._002125.pool.root.1
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:38 start_atlas.sh
[2025-06-05 12:43:08] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:38 shared
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc    508881 Jun  5 01:38 input.tar.gz
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:38 boinc_lockfile
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc      2525 Jun  5 01:38 pandaJob.out
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc    987117 Jun  5 01:39 agis_schedconf.cvmfs.json
[2025-06-05 12:43:08] drwx------. 4 boinc boinc      4096 Jun  5 01:39 pilot3
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc 177759581 Jun  5 05:15 HITS.45006595._053091.pool.root.1
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc       531 Jun  5 05:15 boinc_task_state.xml
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc      1015 Jun  5 05:16 memory_monitor_summary.json
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc   1598969 Jun  5 05:16 agis_ddmendpoints.agis.ALL.json
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc    372506 Jun  5 05:16 log.45006595._053091.job.log.tgz.1
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc        95 Jun  5 05:17 pilot_heartbeat.json
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc      7683 Jun  5 05:18 heartbeat.json
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc      4416 Jun  5 05:18 pilotlog.txt
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc   1135996 Jun  5 05:18 log.45006595._053091.job.log.1
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc       357 Jun  5 05:18 output.list
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc       620 Jun  5 05:18 runtime_log
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc   1525760 Jun  5 05:18 result.tar.gz
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc       656 Jun  5 05:18 WndLDm0bvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjKnKDmZbxDCn.diag
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc      8659 Jun  5 05:18 runtime_log.err
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc        28 Jun  5 12:43 wrapper_checkpoint.txt
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc      8192 Jun  5 12:43 boinc_mmap_file
[2025-06-05 12:43:08] -rw-r--r--. 1 boinc boinc     20567 Jun  5 12:43 stderr.txt
[2025-06-05 12:43:08] HITS file was successfully produced:
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc 177759581 Jun  5 05:15 shared/HITS.pool.root.1
[2025-06-05 12:43:08]  *** Contents of shared directory: ***
[2025-06-05 12:43:08] total 386508
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc 215964357 Jun  5 01:38 ATLAS.root_0
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:38 start_atlas.sh
[2025-06-05 12:43:08] -rw-r--r--. 2 boinc boinc    508881 Jun  5 01:38 input.tar.gz
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc 177759581 Jun  5 05:15 HITS.pool.root.1
[2025-06-05 12:43:08] -rw-------. 1 boinc boinc   1525760 Jun  5 05:18 result.tar.gz
12:43:10 (21525): run_atlas exited; CPU time 49722.240004
12:43:10 (21525): called boinc_finish(0)

</stderr_txt>
]]>

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