Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:56:41 (1370093): wrapper (7.7.26015): starting
07:56:41 (1370093): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:56:41] Arguments: --nthreads 8
[2025-06-04 07:56:41] Threads: 8
[2025-06-04 07:56:41] Checking for CVMFS
[2025-06-04 07:56:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:56:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:56:41] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:56:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:56:41] 2.12.6.0 199032 145190 924508 146779 0 346 20794458 32935936 36680 130560 0 697853262 99.688 561865812 20740 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:56:41] CVMFS is ok
[2025-06-04 07:56:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:56:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:56:41] Further information can be found at the LHC@home message board.
[2025-06-04 07:56:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:56:41] Checking for apptainer binary...
[2025-06-04 07:56:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:56:41] Running /usr/bin/apptainer --version
[2025-06-04 07:56:41] apptainer version 1.4.1-1.el9
[2025-06-04 07:56:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:56:41] lc-10-9.aglt2.org
[2025-06-04 07:56:41] apptainer works
[2025-06-04 07:56:41] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:56:41] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:56:41] Starting ATLAS job with PandaID=6678314024
[2025-06-04 07:56:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:34:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:34:08]  is_tar=False
[2025-06-04 09:34:08]  lfn=log.45006595._052909.job.log.tgz.1
[2025-06-04 09:34:08]  mtime=0
[2025-06-04 09:34:08]  protocol_id=None
[2025-06-04 09:34:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:34:08]  replicas=None
[2025-06-04 09:34:08]  scope=mc23_13p6TeV
[2025-06-04 09:34:08]  status=None
[2025-06-04 09:34:08]  status_code=0
[2025-06-04 09:34:08]  storage_token=
[2025-06-04 09:34:08]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678314024/log.45006595._052909.job.log.tgz.1
[2025-06-04 09:34:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/bf/log.45006595._052909.job.log.tgz.1
[2025-06-04 09:34:08]  workdir=None
[2025-06-04 09:34:08] ]
[2025-06-04 09:34:08] 2025-06-04 13:33:40,969 | INFO     | transferring file log.45006595._052909.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678314024/log.45006595._052909.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:34:08] 2025-06-04 13:33:40,969 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678314024/log.45006595._052909.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._052909.job
[2025-06-04 09:34:08] 2025-06-04 13:33:40,988 | INFO     | adding to output.list: log.45006595._052909.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/bf/log.45006595._052909.job.log.tg
[2025-06-04 09:34:08] 2025-06-04 13:33:40,989 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:34:08] 2025-06-04 13:33:40,989 | INFO     | summary of transferred files:
[2025-06-04 09:34:08] 2025-06-04 13:33:40,989 | INFO     |  -- lfn=log.45006595._052909.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:34:08] 2025-06-04 13:33:40,989 | INFO     | stage-out finished correctly
[2025-06-04 09:34:08] 2025-06-04 13:33:41,620 | WARNING  | process 1382225 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:34:08] 2025-06-04 13:33:41,621 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678314024/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:34:08] 2025-06-04 13:33:42,148 | INFO     | number of running child processes to parent process 1382225: 1
[2025-06-04 09:34:08] 2025-06-04 13:33:42,148 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:34:08] 2025-06-04 13:33:42,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:34:08] 2025-06-04 13:33:43,094 | INFO     | job 6678314024 has state=finished
[2025-06-04 09:34:08] 2025-06-04 13:33:43,094 | INFO     | preparing for final server update for job 6678314024 in state='finished'
[2025-06-04 09:34:08] 2025-06-04 13:33:43,095 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:34:08] 2025-06-04 13:33:43,095 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:34:08] 2025-06-04 13:33:43,095 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:34:08] 2025-06-04 13:33:43,095 | INFO     | job 6678314024 has finished - writing final server update
[2025-06-04 09:34:08] 2025-06-04 13:33:43,096 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:34:08] 2025-06-04 13:33:43,101 | INFO     | executing command: lscpu
[2025-06-04 09:34:08] 2025-06-04 13:33:43,176 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:34:08] 2025-06-04 13:33:44,652 | INFO     | monitor loop #404: job 0:6678314024 is in state 'finished'
[2025-06-04 09:34:08] 2025-06-04 13:33:44,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:34:08] 2025-06-04 13:33:47,159 | INFO     | monitor loop #405: job 0:6678314024 is in state 'finished'
[2025-06-04 09:34:08] 2025-06-04 13:33:47,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,104 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:34:08] 2025-06-04 13:33:48,104 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678314024/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,105 | INFO     | extracted standard info from prmon json
[2025-06-04 09:34:08] 2025-06-04 13:33:48,105 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:34:08] 2025-06-04 13:33:48,105 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:34:08] 2025-06-04 13:33:48,105 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:34:08] 2025-06-04 13:33:48,107 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:34:08] 2025-06-04 13:33:48,110 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:34:08] 2025-06-04 13:33:48,110 | INFO     | sum of square deviations: 211285822.0
[2025-06-04 09:34:08] 2025-06-04 13:33:48,110 | INFO     | sum of deviations: 10844377784.999998
[2025-06-04 09:34:08] 2025-06-04 13:33:48,110 | INFO     | mean x: 1749041205.5
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | mean y: 2116641.9545454546
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | -- intersect: -89768523973.83565
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | intersect: -89768523973.83565
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | chi2: 0.8584791570109523
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | -- intersect: -89768523973.83565
[2025-06-04 09:34:08] 2025-06-04 13:33:48,111 | INFO     | current memory leak: 51.33 B/s (using 88 data points, chi2=0.86)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | ..............................
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . Timing measurements:
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . get job = 0 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . initial setup = 3 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . payload setup = 8 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . stage-in = 0 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . payload execution = 5774 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . stage-out = 0 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | . log creation = 0 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,112 | INFO     | ..............................
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | 
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | job summary report
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | --------------------------------------------------
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | PanDA job id: 6678314024
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | task id: 45006595
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | errors: (none)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:34:08] 2025-06-04 13:33:48,214 | INFO     | pilot state: finished 
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | transexitcode: 0
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | exeerrorcode: 0
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | exeerrordiag: 
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | exitcode: 0
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | exitmsg: OK
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | cpuconsumptiontime: 38321 s
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | nevents: 400
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | neventsw: 0
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | pid: 1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | pgrp: 1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | corecount: 8
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | event service: False
[2025-06-04 09:34:08] 2025-06-04 13:33:48,215 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 5786: 2424202, 5788: 2433143, 5789: 2433199, 5795: 2433497}
[2025-06-04 09:34:08] 2025-06-04 13:33:48,216 | INFO     | --------------------------------------------------
[2025-06-04 09:34:08] 2025-06-04 13:33:48,216 | INFO     | 
[2025-06-04 09:34:08] 2025-06-04 13:33:48,216 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:34:08] 2025-06-04 13:33:48,240 | INFO     | job 6678314024 has completed (purged errors)
[2025-06-04 09:34:08] 2025-06-04 13:33:48,240 | INFO     | overall cleanup function is called
[2025-06-04 09:34:08] 2025-06-04 13:33:49,248 | INFO     | --- collectZombieJob: --- 10, [1382225]
[2025-06-04 09:34:08] 2025-06-04 13:33:49,248 | INFO     | zombie collector waiting for pid 1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:49,248 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:34:08] 2025-06-04 13:33:49,249 | INFO     | collected zombie processes
[2025-06-04 09:34:08] 2025-06-04 13:33:49,249 | INFO     | will attempt to kill all subprocesses of pid=1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:49,817 | INFO     | process IDs to be killed: [1382225] (in reverse order)
[2025-06-04 09:34:08] 2025-06-04 13:33:49,977 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:34:08] 2025-06-04 13:33:49,977 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:34:08] 2025-06-04 13:33:50,000 | INFO     | did not find any defunct processes belonging to 1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:50,023 | INFO     | did not find any defunct processes belonging to 1382225
[2025-06-04 09:34:08] 2025-06-04 13:33:50,023 | INFO     | ready for new job
[2025-06-04 09:34:08] 2025-06-04 13:33:50,023 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:34:08] 2025-06-04 13:33:50,025 | INFO     | **************************************
[2025-06-04 09:34:08] 2025-06-04 13:33:50,025 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:34:08] 2025-06-04 13:33:50,025 | INFO     | **************************************
[2025-06-04 09:34:08] 2025-06-04 13:33:50,025 | INFO     | 
[2025-06-04 09:34:08] 2025-06-04 13:33:50,043 | INFO     | architecture information:
[2025-06-04 09:34:08] 2025-06-04 13:33:50,044 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:34:08] 2025-06-04 13:33:50,064 | INFO     | cat /etc/os-release:
[2025-06-04 09:34:08] NAME="CentOS Linux"
[2025-06-04 09:34:08] VERSION="7 (Core)"
[2025-06-04 09:34:08] ID="centos"
[2025-06-04 09:34:08] ID_LIKE="rhel fedora"
[2025-06-04 09:34:08] VERSION_ID="7"
[2025-06-04 09:34:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:34:08] ANSI_COLOR="0;31"
[2025-06-04 09:34:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:34:08] HOME_URL="https://www.centos.org/"
[2025-06-04 09:34:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:34:08] 
[2025-06-04 09:34:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:34:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:34:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:34:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:34:08] 
[2025-06-04 09:34:08] 2025-06-04 13:33:50,064 | INFO     | **************************************
[2025-06-04 09:34:08] 2025-06-04 13:33:50,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 09:34:08] 2025-06-04 13:33:50,586 | INFO     | sufficient remaining disk space (95459213312 B)
[2025-06-04 09:34:08] 2025-06-04 13:33:50,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:34:08] 2025-06-04 13:33:50,587 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:34:08] 2025-06-04 13:33:50,587 | INFO     | update_server=False
[2025-06-04 09:34:08] 2025-06-04 13:33:50,587 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:34:08] 2025-06-04 13:33:50,587 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:34:08] 2025-06-04 13:33:50,588 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:34:08] 2025-06-04 13:33:50,588 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:34:08] 2025-06-04 13:33:50,588 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:34:08] 2025-06-04 13:33:50,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:34:08] 2025-06-04 13:33:50,678 | INFO     | aborting loop
[2025-06-04 09:34:08] 2025-06-04 13:33:51,139 | INFO     | all data control threads have been joined
[2025-06-04 09:34:08] 2025-06-04 13:33:51,384 | INFO     | all payload control threads have been joined
[2025-06-04 09:34:08] 2025-06-04 13:33:51,593 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:51,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:34:08] 2025-06-04 13:33:51,684 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:51,754 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:51,972 | INFO     | all job control threads have been joined
[2025-06-04 09:34:08] 2025-06-04 13:33:52,023 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,105 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,144 | INFO     | [data] control thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,389 | INFO     | [payload] control thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,417 | INFO     | [job] validate thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,724 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,803 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:52,978 | INFO     | [job] control thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:53,001 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:53,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:34:08] 2025-06-04 13:33:53,224 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:34:08] 2025-06-04 13:33:53,627 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:54,229 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:33:57,037 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:34:00,659 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:34:08] 2025-06-04 13:34:01,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:34:08] 2025-06-04 13:34:02,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140577227339584)>', '<ExcThread(monitor, started 140576720660224)>']
[2025-06-04 09:34:08] 2025-06-04 13:34:03,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:34:08] 2025-06-04 13:34:03,654 | INFO     | [monitor] control thread has ended
[2025-06-04 09:34:08] 2025-06-04 13:34:07,751 | INFO     | all workflow threads have been joined
[2025-06-04 09:34:08] 2025-06-04 13:34:07,755 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:34:08] 2025-06-04 13:34:07,755 | INFO     | traces error code: 0
[2025-06-04 09:34:08] 2025-06-04 13:34:07,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:34:08] 2025-06-04 13:34:07,952 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:34:08] 2025-06-04 13:34:07,955 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:34:08] 2025-06-04 13:34:07,959 [wrapper] pilotpid: 1375495
[2025-06-04 09:34:08] 2025-06-04 13:34:07,962 [wrapper] Pilot exit status: 0
[2025-06-04 09:34:08] 2025-06-04 13:34:07,974 [wrapper] pandaids: 6678314024
[2025-06-04 09:34:08] 2025-06-04 13:34:08,095 [wrapper] cleanup supervisor_pilot 2302958 1375496
[2025-06-04 09:34:08] 2025-06-04 13:34:08,099 [wrapper] Test setup, not cleaning
[2025-06-04 09:34:08] 2025-06-04 13:34:08,102 [wrapper] apfmon messages muted
[2025-06-04 09:34:08] 2025-06-04 13:34:08,106 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:34:08] 2025-06-04 13:34:08,109 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:34:08]  *** Error codes and diagnostics ***
[2025-06-04 09:34:08]     "exeErrorCode": 0,
[2025-06-04 09:34:08]     "exeErrorDiag": "",
[2025-06-04 09:34:08]     "pilotErrorCode": 0,
[2025-06-04 09:34:08]     "pilotErrorDiag": "",
[2025-06-04 09:34:08]  *** Listing of results directory ***
[2025-06-04 09:34:08] total 388408
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:58 pilot3.tar.gz
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 01:09 queuedata.json
[2025-06-04 09:34:08] -rwx------. 1 boincer umatlas     37140 Jun  4 01:09 runpilot2-wrapper.sh
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:34:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:56 run_atlas
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:56 job.xml
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas 214492542 Jun  4 07:56 EVNT.45006593._002119.pool.root.1
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:56 start_atlas.sh
[2025-06-04 09:34:08] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:56 shared
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 07:56 input.tar.gz
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:56 boinc_lockfile
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:56 pandaJob.out
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas    986812 Jun  4 07:56 agis_schedconf.cvmfs.json
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas   1598969 Jun  4 07:56 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:34:08] drwx------. 4 boincer umatlas      4096 Jun  4 07:56 pilot3
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas      6863 Jun  4 09:29 init_data.xml
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas 177687887 Jun  4 09:33 HITS.45006595._052909.pool.root.1
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas       530 Jun  4 09:33 boinc_task_state.xml
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas        95 Jun  4 09:33 pilot_heartbeat.json
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas      1044 Jun  4 09:33 memory_monitor_summary.json
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas    309232 Jun  4 09:33 log.45006595._052909.job.log.tgz.1
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas      7721 Jun  4 09:33 heartbeat.json
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:33 boinc_mmap_file
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:33 wrapper_checkpoint.txt
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas      4548 Jun  4 09:34 pilotlog.txt
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas    550299 Jun  4 09:34 log.45006595._052909.job.log.1
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas       357 Jun  4 09:34 output.list
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:34 runtime_log
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas    880640 Jun  4 09:34 result.tar.gz
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 09:34 runtime_log.err
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas       652 Jun  4 09:34 AtwMDmwYvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5JnKDmYLY41n.diag
[2025-06-04 09:34:08] -rw-r--r--. 1 boincer umatlas     21512 Jun  4 09:34 stderr.txt
[2025-06-04 09:34:08] HITS file was successfully produced:
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas 177687887 Jun  4 09:33 shared/HITS.pool.root.1
[2025-06-04 09:34:08]  *** Contents of shared directory: ***
[2025-06-04 09:34:08] total 384372
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas 214492542 Jun  4 07:56 ATLAS.root_0
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:56 start_atlas.sh
[2025-06-04 09:34:08] -rw-r--r--. 2 boincer umatlas    508879 Jun  4 07:56 input.tar.gz
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas 177687887 Jun  4 09:33 HITS.pool.root.1
[2025-06-04 09:34:08] -rw-------. 1 boincer umatlas    880640 Jun  4 09:34 result.tar.gz
09:34:09 (1370093): run_atlas exited; CPU time 38653.708997
09:34:09 (1370093): called boinc_finish(0)

</stderr_txt>
]]>

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