Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:05:50 (2362608): wrapper (7.7.26015): starting
08:05:50 (2362608): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:05:50] Arguments: --nthreads 8
[2025-06-04 08:05:50] Threads: 8
[2025-06-04 08:05:50] Checking for CVMFS
[2025-06-04 08:05:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:05:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:05:51] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:05:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:05:51] 2.12.6.0 2443832 23506 532144 146779 0 197 32315604 32935936 12890 16776704 0 140243106 99.644 125967625 26105 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:05:51] CVMFS is ok
[2025-06-04 08:05:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:05:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:05:51] Further information can be found at the LHC@home message board.
[2025-06-04 08:05:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:05:51] Checking for apptainer binary...
[2025-06-04 08:05:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:05:51] Running /usr/bin/apptainer --version
[2025-06-04 08:05:51] apptainer version 1.4.1-1.el9
[2025-06-04 08:05:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:05:51] c6-12-29-1.aglt2.org
[2025-06-04 08:05:51] apptainer works
[2025-06-04 08:05:51] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:05:51] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:05:51] Starting ATLAS job with PandaID=6678390313
[2025-06-04 08:05:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:04:56]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:04:56]  filetype=log
[2025-06-04 09:04:56]  guid=9934c93e-98f9-4f54-a3d7-3e367c6ea48c
[2025-06-04 09:04:56]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 09:04:56]  is_altstaged=None
[2025-06-04 09:04:56]  is_tar=False
[2025-06-04 09:04:56]  lfn=log.45006595._054764.job.log.tgz.1
[2025-06-04 09:04:56]  mtime=0
[2025-06-04 09:04:56]  protocol_id=None
[2025-06-04 09:04:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:04:56]  replicas=None
[2025-06-04 09:04:56]  scope=mc23_13p6TeV
[2025-06-04 09:04:56]  status=None
[2025-06-04 09:04:56]  status_code=0
[2025-06-04 09:04:56]  storage_token=
[2025-06-04 09:04:56]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678390313/log.45006595._054764.job.log.tgz.1
[2025-06-04 09:04:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/d5/log.45006595._054764.job.log.tgz.1
[2025-06-04 09:04:56]  workdir=None
[2025-06-04 09:04:56] ]
[2025-06-04 09:04:56] 2025-06-04 13:04:38,333 | INFO     | transferring file log.45006595._054764.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678390313/log.45006595._054764.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:04:56] 2025-06-04 13:04:38,334 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678390313/log.45006595._054764.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._054764.job
[2025-06-04 09:04:56] 2025-06-04 13:04:38,355 | INFO     | adding to output.list: log.45006595._054764.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/14/d5/log.45006595._054764.job.log.tg
[2025-06-04 09:04:56] 2025-06-04 13:04:38,355 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:04:56] 2025-06-04 13:04:38,355 | INFO     | summary of transferred files:
[2025-06-04 09:04:56] 2025-06-04 13:04:38,356 | INFO     |  -- lfn=log.45006595._054764.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:04:56] 2025-06-04 13:04:38,356 | INFO     | stage-out finished correctly
[2025-06-04 09:04:56] 2025-06-04 13:04:39,293 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:04:56] 2025-06-04 13:04:39,419 | INFO     | job 6678390313 has state=finished
[2025-06-04 09:04:56] 2025-06-04 13:04:39,419 | INFO     | preparing for final server update for job 6678390313 in state='finished'
[2025-06-04 09:04:56] 2025-06-04 13:04:39,482 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 09:04:56] 2025-06-04 13:04:39,482 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:04:56] 2025-06-04 13:04:39,483 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:04:56] 2025-06-04 13:04:39,483 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:04:56] 2025-06-04 13:04:39,483 | INFO     | job 6678390313 has finished - writing final server update
[2025-06-04 09:04:56] 2025-06-04 13:04:39,483 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:04:56] 2025-06-04 13:04:39,503 | INFO     | executing command: lscpu
[2025-06-04 09:04:56] 2025-06-04 13:04:39,588 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:04:56] 2025-06-04 13:04:39,615 | INFO     | monitor loop #261: job 0:6678390313 is in state 'finished'
[2025-06-04 09:04:56] 2025-06-04 13:04:39,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:04:56] 2025-06-04 13:04:42,118 | INFO     | monitor loop #262: job 0:6678390313 is in state 'finished'
[2025-06-04 09:04:56] 2025-06-04 13:04:42,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,149 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 09:04:56] 2025-06-04 13:04:44,150 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678390313/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,151 | INFO     | extracted standard info from prmon json
[2025-06-04 09:04:56] 2025-06-04 13:04:44,151 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:04:56] 2025-06-04 13:04:44,151 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:04:56] 2025-06-04 13:04:44,152 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:04:56] 2025-06-04 13:04:44,152 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:04:56] 2025-06-04 13:04:44,155 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:04:56] 2025-06-04 13:04:44,155 | INFO     | sum of square deviations: 41117050.0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | sum of deviations: 5813100896.0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | mean x: 1749040615.0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | mean y: 2100398.7843137253
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | -- intersect: -247276086294.98123
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | intersect: -247276086294.98123
[2025-06-04 09:04:56] 2025-06-04 13:04:44,156 | INFO     | chi2: 0.7220862271881622
[2025-06-04 09:04:56] 2025-06-04 13:04:44,157 | INFO     | -- intersect: -247276086294.98123
[2025-06-04 09:04:56] 2025-06-04 13:04:44,157 | INFO     | current memory leak: 141.38 B/s (using 51 data points, chi2=0.72)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,157 | INFO     | ..............................
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . Timing measurements:
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . get job = 0 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . initial setup = 2 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . payload setup = 5 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . stage-in = 0 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . payload execution = 3493 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . stage-out = 0 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | . log creation = 0 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,158 | INFO     | ..............................
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | 
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | job summary report
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | --------------------------------------------------
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | PanDA job id: 6678390313
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | task id: 45006595
[2025-06-04 09:04:56] 2025-06-04 13:04:44,214 | INFO     | errors: (none)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | pilot state: finished 
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | transexitcode: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | exeerrorcode: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | exeerrordiag: 
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | exitcode: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | exitmsg: OK
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | cpuconsumptiontime: 22922 s
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | nevents: 400
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | neventsw: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | pid: 2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | pgrp: 2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | corecount: 8
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | event service: False
[2025-06-04 09:04:56] 2025-06-04 13:04:44,215 | INFO     | sizes: {0: 2397342, 4: 2397548, 11: 2397576, 3502: 2423205, 3503: 2432146, 3504: 2432202, 3509: 2432500}
[2025-06-04 09:04:56] 2025-06-04 13:04:44,216 | INFO     | --------------------------------------------------
[2025-06-04 09:04:56] 2025-06-04 13:04:44,216 | INFO     | 
[2025-06-04 09:04:56] 2025-06-04 13:04:44,216 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 09:04:56] 2025-06-04 13:04:44,237 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,237 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,237 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,238 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,240 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:04:56] 2025-06-04 13:04:44,240 | INFO     | job 6678390313 has completed (purged errors)
[2025-06-04 09:04:56] 2025-06-04 13:04:44,240 | INFO     | overall cleanup function is called
[2025-06-04 09:04:56] 2025-06-04 13:04:45,249 | INFO     | --- collectZombieJob: --- 10, [2372761]
[2025-06-04 09:04:56] 2025-06-04 13:04:45,249 | INFO     | zombie collector waiting for pid 2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:45,249 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:04:56] 2025-06-04 13:04:45,250 | INFO     | collected zombie processes
[2025-06-04 09:04:56] 2025-06-04 13:04:45,250 | INFO     | will attempt to kill all subprocesses of pid=2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:45,449 | INFO     | process IDs to be killed: [2372761] (in reverse order)
[2025-06-04 09:04:56] 2025-06-04 13:04:45,519 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:04:56] 2025-06-04 13:04:45,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:04:56] 2025-06-04 13:04:45,533 | INFO     | did not find any defunct processes belonging to 2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:45,545 | INFO     | did not find any defunct processes belonging to 2372761
[2025-06-04 09:04:56] 2025-06-04 13:04:45,546 | INFO     | ready for new job
[2025-06-04 09:04:56] 2025-06-04 13:04:45,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:04:56] 2025-06-04 13:04:45,547 | INFO     | **************************************
[2025-06-04 09:04:56] 2025-06-04 13:04:45,547 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:04:56] 2025-06-04 13:04:45,547 | INFO     | **************************************
[2025-06-04 09:04:56] 2025-06-04 13:04:45,547 | INFO     | 
[2025-06-04 09:04:56] 2025-06-04 13:04:45,564 | INFO     | architecture information:
[2025-06-04 09:04:56] 2025-06-04 13:04:45,565 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:04:56] 2025-06-04 13:04:45,582 | INFO     | cat /etc/os-release:
[2025-06-04 09:04:56] NAME="CentOS Linux"
[2025-06-04 09:04:56] VERSION="7 (Core)"
[2025-06-04 09:04:56] ID="centos"
[2025-06-04 09:04:56] ID_LIKE="rhel fedora"
[2025-06-04 09:04:56] VERSION_ID="7"
[2025-06-04 09:04:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:04:56] ANSI_COLOR="0;31"
[2025-06-04 09:04:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:04:56] HOME_URL="https://www.centos.org/"
[2025-06-04 09:04:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:04:56] 
[2025-06-04 09:04:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:04:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:04:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:04:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:04:56] 
[2025-06-04 09:04:56] 2025-06-04 13:04:45,582 | INFO     | **************************************
[2025-06-04 09:04:56] 2025-06-04 13:04:46,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 09:04:56] 2025-06-04 13:04:46,104 | INFO     | sufficient remaining disk space (95439290368 B)
[2025-06-04 09:04:56] 2025-06-04 13:04:46,104 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:04:56] 2025-06-04 13:04:46,104 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:04:56] 2025-06-04 13:04:46,105 | INFO     | update_server=False
[2025-06-04 09:04:56] 2025-06-04 13:04:46,105 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:04:56] 2025-06-04 13:04:46,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:04:56] 2025-06-04 13:04:46,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:04:56] 2025-06-04 13:04:46,105 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 09:04:56] 2025-06-04 13:04:46,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:04:56] 2025-06-04 13:04:46,106 | INFO     | aborting loop
[2025-06-04 09:04:56] 2025-06-04 13:04:46,107 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:04:56] 2025-06-04 13:04:46,107 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:04:56] 2025-06-04 13:04:46,107 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:04:56] 2025-06-04 13:04:46,233 | INFO     | all data control threads have been joined
[2025-06-04 09:04:56] 2025-06-04 13:04:46,419 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:04:56] 2025-06-04 13:04:46,422 | INFO     | all payload control threads have been joined
[2025-06-04 09:04:56] 2025-06-04 13:04:46,423 | INFO     | all job control threads have been joined
[2025-06-04 09:04:56] 2025-06-04 13:04:47,110 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,111 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,112 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,238 | INFO     | [data] control thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,428 | INFO     | [payload] control thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,428 | INFO     | [job] control thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,489 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,599 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,692 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:47,801 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:48,137 | INFO     | [job] validate thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:48,153 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:48,356 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:48,408 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:48,425 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:50,112 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:04:56] 2025-06-04 13:04:51,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140268881061696)>', '<ExcThread(monitor, started 140268120565504)>']
[2025-06-04 09:04:56] 2025-06-04 13:04:52,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:04:56] 2025-06-04 13:04:52,134 | INFO     | [monitor] control thread has ended
[2025-06-04 09:04:56] 2025-06-04 13:04:56,362 | INFO     | all workflow threads have been joined
[2025-06-04 09:04:56] 2025-06-04 13:04:56,363 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:04:56] 2025-06-04 13:04:56,363 | INFO     | traces error code: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:56,364 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:04:56] 2025-06-04 13:04:56,498 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:04:56] 2025-06-04 13:04:56,502 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:04:56] 2025-06-04 13:04:56,506 [wrapper] pilotpid: 2366248
[2025-06-04 09:04:56] 2025-06-04 13:04:56,509 [wrapper] Pilot exit status: 0
[2025-06-04 09:04:56] 2025-06-04 13:04:56,522 [wrapper] pandaids: 6678390313
[2025-06-04 09:04:56] 2025-06-04 13:04:56,576 [wrapper] cleanup supervisor_pilot 2517479 2366249
[2025-06-04 09:04:56] 2025-06-04 13:04:56,578 [wrapper] Test setup, not cleaning
[2025-06-04 09:04:56] 2025-06-04 13:04:56,582 [wrapper] apfmon messages muted
[2025-06-04 09:04:56] 2025-06-04 13:04:56,584 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:04:56] 2025-06-04 13:04:56,588 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:04:56]  *** Error codes and diagnostics ***
[2025-06-04 09:04:56]     "exeErrorCode": 0,
[2025-06-04 09:04:56]     "exeErrorDiag": "",
[2025-06-04 09:04:56]     "pilotErrorCode": 0,
[2025-06-04 09:04:56]     "pilotErrorDiag": "",
[2025-06-04 09:04:56]  *** Listing of results directory ***
[2025-06-04 09:04:56] total 382220
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-04 09:04:56] -rwx------. 1 boincer umatlas     37140 Jun  4 03:24 runpilot2-wrapper.sh
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:24 queuedata.json
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:04:56] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:05 run_atlas
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:05 job.xml
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 08:05 EVNT.45006593._002191.pool.root.1
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:05 start_atlas.sh
[2025-06-04 09:04:56] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:05 shared
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 08:05 input.tar.gz
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:05 boinc_lockfile
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 08:05 pandaJob.out
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas    986812 Jun  4 08:05 agis_schedconf.cvmfs.json
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas   1598969 Jun  4 08:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:04:56] drwx------. 4 boincer umatlas      4096 Jun  4 08:06 pilot3
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas      6858 Jun  4 09:03 init_data.xml
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas 171827795 Jun  4 09:04 HITS.45006595._054764.pool.root.1
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas        95 Jun  4 09:04 pilot_heartbeat.json
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:04 boinc_task_state.xml
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas      1032 Jun  4 09:04 memory_monitor_summary.json
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:04 boinc_mmap_file
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:04 wrapper_checkpoint.txt
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas    297629 Jun  4 09:04 log.45006595._054764.job.log.tgz.1
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas      7715 Jun  4 09:04 heartbeat.json
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas      4476 Jun  4 09:04 pilotlog.txt
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas    357138 Jun  4 09:04 log.45006595._054764.job.log.1
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas       357 Jun  4 09:04 output.list
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:04 runtime_log
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas    675840 Jun  4 09:04 result.tar.gz
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas      8669 Jun  4 09:04 runtime_log.err
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas       652 Jun  4 09:04 Ip9MDmWfxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjbnKDmJthO7m.diag
[2025-06-04 09:04:56] -rw-r--r--. 1 boincer umatlas     21239 Jun  4 09:04 stderr.txt
[2025-06-04 09:04:56] HITS file was successfully produced:
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas 171827795 Jun  4 09:04 shared/HITS.pool.root.1
[2025-06-04 09:04:56]  *** Contents of shared directory: ***
[2025-06-04 09:04:56] total 378384
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 08:05 ATLAS.root_0
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:05 start_atlas.sh
[2025-06-04 09:04:56] -rw-r--r--. 2 boincer umatlas    508878 Jun  4 08:05 input.tar.gz
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas 171827795 Jun  4 09:04 HITS.pool.root.1
[2025-06-04 09:04:56] -rw-------. 1 boincer umatlas    675840 Jun  4 09:04 result.tar.gz
09:04:58 (2362608): run_atlas exited; CPU time 23054.313966
09:04:58 (2362608): called boinc_finish(0)

</stderr_txt>
]]>

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