Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:30:29 (27935): wrapper (7.7.26015): starting
23:30:29 (27935): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 23:30:29] Arguments: --nthreads 8
[2025-06-04 23:30:29] Threads: 8
[2025-06-04 23:30:29] Checking for CVMFS
[2025-06-04 23:30:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 23:30:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 23:30:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 23:30:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 23:30:32] 2.11.2.0 26010 33785 94612 146795 3 16 13904867 25165824 2752 130560 0 17373182 99.783 20355154 2076 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 23:30:32] CVMFS is ok
[2025-06-04 23:30:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:30:32] Checking for apptainer binary...
[2025-06-04 23:30:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 23:30:32] Running /usr/bin/apptainer --version
[2025-06-04 23:30:32] apptainer version 1.3.2-1.el7
[2025-06-04 23:30:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:30:37] cg-vwn216.simple-grid.lan
[2025-06-04 23:30:37] apptainer works
[2025-06-04 23:30:37] Set ATHENA_PROC_NUMBER=8
[2025-06-04 23:30:37] Set ATHENA_CORE_NUMBER=8
[2025-06-04 23:30:37] Starting ATLAS job with PandaID=6678392134
[2025-06-04 23:30:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 06:32:47]  *** The last 200 lines of the pilot log: ***
[2025-06-05 06:32:47] 2025-06-05 01:36:38,246 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 06:32:47] 2025-06-05 01:36:38,246 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 06:32:47] 2025-06-05 01:36:38,247 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 06:32:47] 2025-06-05 01:36:38,247 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 06:32:47] 2025-06-05 01:36:38,252 | INFO     | fitting pss+swap vs Time
[2025-06-05 06:32:47] 2025-06-05 01:36:38,253 | INFO     | sum of square deviations: 3772712597.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,255 | INFO     | sum of deviations: 98211777814.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,255 | INFO     | mean x: 1749080296.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,255 | INFO     | mean y: 2411266.195652174
[2025-06-05 06:32:47] 2025-06-05 01:36:38,255 | INFO     | -- intersect: -45529889702.98194
[2025-06-05 06:32:47] 2025-06-05 01:36:38,255 | INFO     | intersect: -45529889702.98194
[2025-06-05 06:32:47] 2025-06-05 01:36:38,256 | INFO     | chi2: 7.82384690853158
[2025-06-05 06:32:47] 2025-06-05 01:36:38,256 | INFO     | sum of square deviations: 3531973200.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,258 | INFO     | sum of deviations: 110839603418.99998
[2025-06-05 06:32:47] 2025-06-05 01:36:38,258 | INFO     | mean x: 1749080144.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,258 | INFO     | mean y: 2419097.1866666665
[2025-06-05 06:32:47] 2025-06-05 01:36:38,258 | INFO     | -- intersect: -54886827941.552864
[2025-06-05 06:32:47] 2025-06-05 01:36:38,259 | INFO     | intersect: -54886827941.552864
[2025-06-05 06:32:47] 2025-06-05 01:36:38,259 | INFO     | chi2: 7.12728626730435
[2025-06-05 06:32:47] 2025-06-05 01:36:38,259 | INFO     | current chi2=7.12728626730435 (change=8.903045386377126 %)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,259 | INFO     | right removable region: 224
[2025-06-05 06:32:47] 2025-06-05 01:36:38,260 | INFO     | sum of square deviations: 3531973200.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,261 | INFO     | sum of deviations: 17596635718.000008
[2025-06-05 06:32:47] 2025-06-05 01:36:38,262 | INFO     | mean x: 1749080449.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,262 | INFO     | mean y: 2462305.991111111
[2025-06-05 06:32:47] 2025-06-05 01:36:38,262 | INFO     | -- intersect: -8711627456.221378
[2025-06-05 06:32:47] 2025-06-05 01:36:38,262 | INFO     | intersect: -8711627456.221378
[2025-06-05 06:32:47] 2025-06-05 01:36:38,262 | INFO     | chi2: 2.683313188766574
[2025-06-05 06:32:47] 2025-06-05 01:36:38,263 | INFO     | current chi2=2.683313188766574 (change=65.7034037074456 %)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,263 | INFO     | sum of square deviations: 3301699115.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,265 | INFO     | sum of deviations: -27587621490.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,265 | INFO     | mean x: 1749080601.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,265 | INFO     | mean y: 2492077.227272727
[2025-06-05 06:32:47] 2025-06-05 01:36:38,265 | INFO     | -- intersect: 14617080478.231075
[2025-06-05 06:32:47] 2025-06-05 01:36:38,265 | INFO     | intersect: 14617080478.231075
[2025-06-05 06:32:47] 2025-06-05 01:36:38,266 | INFO     | chi2: 0.9252349565774067
[2025-06-05 06:32:47] 2025-06-05 01:36:38,266 | INFO     | current chi2=0.9252349565774067 (change=65.51893530539739 %)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,266 | INFO     | sum of square deviations: 3081657780.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,268 | INFO     | sum of deviations: -29738589887.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,268 | INFO     | mean x: 1749080754.0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,268 | INFO     | mean y: 2493525.9209302324
[2025-06-05 06:32:47] 2025-06-05 01:36:38,268 | INFO     | -- intersect: 16881458984.06818
[2025-06-05 06:32:47] 2025-06-05 01:36:38,269 | INFO     | intersect: 16881458984.06818
[2025-06-05 06:32:47] 2025-06-05 01:36:38,269 | INFO     | chi2: 0.8972872757770053
[2025-06-05 06:32:47] 2025-06-05 01:36:38,269 | INFO     | current chi2=0.8972872757770053 (change=3.0206036425368556 %)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,269 | INFO     | left removable region: 30
[2025-06-05 06:32:47] 2025-06-05 01:36:38,270 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,271 | INFO     | sum of deviations: 3702137976.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,271 | INFO     | mean x: 1749081028.5
[2025-06-05 06:32:47] 2025-06-05 01:36:38,271 | INFO     | mean y: 2488810.2731958763
[2025-06-05 06:32:47] 2025-06-05 01:36:38,271 | INFO     | -- intersect: -2857672025.540088
[2025-06-05 06:32:47] 2025-06-05 01:36:38,272 | INFO     | intersect: -2857672025.540088
[2025-06-05 06:32:47] 2025-06-05 01:36:38,272 | INFO     | chi2: 0.0010612071918112969
[2025-06-05 06:32:47] 2025-06-05 01:36:38,272 | INFO     | -- intersect: -2857672025.540088
[2025-06-05 06:32:47] 2025-06-05 01:36:38,272 | INFO     | current memory leak: 1.64 B/s (using 194 data points, chi2=0.00)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,273 | INFO     | ..............................
[2025-06-05 06:32:47] 2025-06-05 01:36:38,273 | INFO     | . Timing measurements:
[2025-06-05 06:32:47] 2025-06-05 01:36:38,273 | INFO     | . get job = 0 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . initial setup = 4 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . payload setup = 154 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . stage-in = 0 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . payload execution = 14133 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . stage-out = 3 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | . log creation = 1 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,274 | INFO     | ..............................
[2025-06-05 06:32:47] 2025-06-05 01:36:38,405 | INFO     | 
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | job summary report
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | --------------------------------------------------
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | PanDA job id: 6678392134
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | task id: 45006595
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | errors: (none)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 06:32:47] 2025-06-05 01:36:38,406 | INFO     | pilot state: finished 
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | transexitcode: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | exeerrorcode: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | exeerrordiag: 
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | exitcode: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | exitmsg: OK
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | cpuconsumptiontime: 51265 s
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | nevents: 400
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | neventsw: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | pid: 13188
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | pgrp: 13188
[2025-06-05 06:32:47] 2025-06-05 01:36:38,407 | INFO     | corecount: 8
[2025-06-05 06:32:47] 2025-06-05 01:36:38,408 | INFO     | event service: False
[2025-06-05 06:32:47] 2025-06-05 01:36:38,408 | INFO     | sizes: {0: 2396514, 1: 2397200, 2: 2397399, 13: 2397399, 24: 2397455, 34: 2397483, 45: 2397639, 56: 2397667, 67: 2397695, 77: 2397723, 88: 2397779, 90: 2398293, 99
[2025-06-05 06:32:47] 2025-06-05 01:36:38,408 | INFO     | --------------------------------------------------
[2025-06-05 06:32:47] 2025-06-05 01:36:38,408 | INFO     | 
[2025-06-05 06:32:47] 2025-06-05 01:36:38,408 | INFO     | executing command: ls -lF /var/lib/boinc/slots/13
[2025-06-05 06:32:47] 2025-06-05 01:36:38,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,843 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,843 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 06:32:47] 2025-06-05 01:36:38,843 | INFO     | job 6678392134 has completed (purged errors)
[2025-06-05 06:32:47] 2025-06-05 01:36:38,843 | INFO     | overall cleanup function is called
[2025-06-05 06:32:47] 2025-06-05 01:36:39,851 | INFO     | --- collectZombieJob: --- 10, [13188]
[2025-06-05 06:32:47] 2025-06-05 01:36:39,852 | INFO     | zombie collector waiting for pid 13188
[2025-06-05 06:32:47] 2025-06-05 01:36:39,852 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 06:32:47] 2025-06-05 01:36:39,852 | INFO     | collected zombie processes
[2025-06-05 06:32:47] 2025-06-05 01:36:39,852 | INFO     | will attempt to kill all subprocesses of pid=13188
[2025-06-05 06:32:47] 2025-06-05 01:36:39,988 | INFO     | process IDs to be killed: [13188] (in reverse order)
[2025-06-05 06:32:47] 2025-06-05 01:36:40,962 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 06:32:47] 2025-06-05 01:36:40,963 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 06:32:47] 2025-06-05 01:36:40,967 | INFO     | did not find any defunct processes belonging to 13188
[2025-06-05 06:32:47] 2025-06-05 01:36:40,980 | INFO     | did not find any defunct processes belonging to 13188
[2025-06-05 06:32:47] 2025-06-05 01:36:40,981 | INFO     | ready for new job
[2025-06-05 06:32:47] 2025-06-05 01:36:40,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 06:32:47] 2025-06-05 01:36:40,983 | INFO     | **************************************
[2025-06-05 06:32:47] 2025-06-05 01:36:40,984 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 06:32:47] 2025-06-05 01:36:40,984 | INFO     | **************************************
[2025-06-05 06:32:47] 2025-06-05 01:36:40,984 | INFO     | 
[2025-06-05 06:32:47] 2025-06-05 01:36:40,985 | INFO     | pilot is running in a VM
[2025-06-05 06:32:47] 2025-06-05 01:36:40,985 | INFO     | architecture information:
[2025-06-05 06:32:47] 2025-06-05 01:36:40,998 | INFO     | executing command: cat /etc/os-release
[2025-06-05 06:32:47] 2025-06-05 01:36:41,217 | INFO     | cat /etc/os-release:
[2025-06-05 06:32:47] NAME="CentOS Linux"
[2025-06-05 06:32:47] VERSION="7 (Core)"
[2025-06-05 06:32:47] ID="centos"
[2025-06-05 06:32:47] ID_LIKE="rhel fedora"
[2025-06-05 06:32:47] VERSION_ID="7"
[2025-06-05 06:32:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 06:32:47] ANSI_COLOR="0;31"
[2025-06-05 06:32:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 06:32:47] HOME_URL="https://www.centos.org/"
[2025-06-05 06:32:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 06:32:47] 
[2025-06-05 06:32:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 06:32:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 06:32:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 06:32:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 06:32:47] 
[2025-06-05 06:32:47] 2025-06-05 01:36:41,217 | INFO     | **************************************
[2025-06-05 06:32:47] 2025-06-05 01:36:41,721 | INFO     | executing command: df -mP /var/lib/boinc/slots/13
[2025-06-05 06:32:47] 2025-06-05 01:36:41,936 | INFO     | sufficient remaining disk space (497705549824 B)
[2025-06-05 06:32:47] 2025-06-05 01:36:41,937 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 06:32:47] 2025-06-05 01:36:41,937 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 06:32:47] 2025-06-05 01:36:41,937 | INFO     | update_server=False
[2025-06-05 06:32:47] 2025-06-05 01:36:41,937 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 06:32:47] 2025-06-05 01:36:41,937 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 06:32:47] 2025-06-05 01:36:41,945 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 06:32:47] 2025-06-05 01:36:41,953 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 06:32:47] 2025-06-05 01:36:41,953 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 06:32:47] 2025-06-05 01:36:41,953 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 06:32:47] 2025-06-05 01:36:41,989 | INFO     | all job control threads have been joined
[2025-06-05 06:32:47] 2025-06-05 01:36:42,125 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 06:32:47] 2025-06-05 01:36:42,125 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 06:32:47] 2025-06-05 01:36:42,125 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:32:47] 2025-06-05 01:36:42,125 | INFO     | will abort loop
[2025-06-05 06:32:47] 2025-06-05 01:36:42,750 | INFO     | all data control threads have been joined
[2025-06-05 06:32:47] 2025-06-05 01:36:42,943 | INFO     | [job] retrieve thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:42,949 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:42,982 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:42,996 | INFO     | [job] control thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,089 | INFO     | [job] validate thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,132 | INFO     | [job] job monitor thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,161 | INFO     | all payload control threads have been joined
[2025-06-05 06:32:47] 2025-06-05 01:36:43,283 | INFO     | [payload] validate_post thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 06:32:47] 2025-06-05 01:36:43,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,756 | INFO     | [data] control thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,896 | INFO     | [payload] failed_post thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:43,945 | INFO     | [data] copytool_out thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:44,112 | INFO     | [data] copytool_in thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:44,168 | INFO     | [payload] control thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:44,169 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:44,431 | INFO     | [job] queue monitor thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:45,954 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 06:32:47] 2025-06-05 01:36:46,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933931984704)>', '<ExcThread(monitor, started 139933490591488)>']
[2025-06-05 06:32:47] 2025-06-05 01:36:46,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 06:32:47] 2025-06-05 01:36:46,982 | INFO     | [monitor] control thread has ended
[2025-06-05 06:32:47] 2025-06-05 01:36:51,656 | INFO     | all workflow threads have been joined
[2025-06-05 06:32:47] 2025-06-05 01:36:51,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 06:32:47] 2025-06-05 01:36:51,656 | INFO     | traces error code: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:51,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 06:32:47] 2025-06-05 01:36:51,982 [wrapper] ==== pilot stdout END ====
[2025-06-05 06:32:47] 2025-06-05 01:36:52,001 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 06:32:47] 2025-06-05 01:36:52,051 [wrapper] pilotpid: 1922
[2025-06-05 06:32:47] 2025-06-05 01:36:52,114 [wrapper] Pilot exit status: 0
[2025-06-05 06:32:47] 2025-06-05 01:36:52,378 [wrapper] pandaids: 6678392134
[2025-06-05 06:32:47] 2025-06-05 01:36:52,866 [wrapper] cleanup supervisor_pilot 15598 1923
[2025-06-05 06:32:47] 2025-06-05 01:36:52,916 [wrapper] Test setup, not cleaning
[2025-06-05 06:32:47] 2025-06-05 01:36:52,959 [wrapper] apfmon messages muted
[2025-06-05 06:32:47] 2025-06-05 01:36:53,001 [wrapper] ==== wrapper stdout END ====
[2025-06-05 06:32:47] 2025-06-05 01:36:53,044 [wrapper] ==== wrapper stderr END ====
[2025-06-05 06:32:47]  *** Error codes and diagnostics ***
[2025-06-05 06:32:47]     "exeErrorCode": 0,
[2025-06-05 06:32:47]     "exeErrorDiag": "",
[2025-06-05 06:32:47]     "pilotErrorCode": 0,
[2025-06-05 06:32:47]     "pilotErrorDiag": "",
[2025-06-05 06:32:47]  *** Listing of results directory ***
[2025-06-05 06:32:47] total 389780
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc      5111 Jun  4 09:34 queuedata.json
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc    495897 Jun  4 09:34 pilot3.tar.gz
[2025-06-05 06:32:47] -rwx------. 1 boinc boinc     37140 Jun  4 09:36 runpilot2-wrapper.sh
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc       100 Jun  4 23:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 06:32:47] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 23:30 run_atlas
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc       105 Jun  4 23:30 job.xml
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc      6392 Jun  4 23:30 init_data.xml
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc 213379142 Jun  4 23:30 EVNT.45006593._002207.pool.root.1
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:30 start_atlas.sh
[2025-06-05 06:32:47] drwxrwx--x. 2 boinc boinc        68 Jun  4 23:30 shared
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc    508886 Jun  4 23:30 input.tar.gz
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc         0 Jun  4 23:30 boinc_lockfile
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc      2525 Jun  4 23:30 pandaJob.out
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc    987032 Jun  4 23:33 agis_schedconf.cvmfs.json
[2025-06-05 06:32:47] drwx------. 4 boinc boinc      4096 Jun  4 23:33 pilot3
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc 178678734 Jun  5 03:33 HITS.45006595._055163.pool.root.1
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:33 boinc_task_state.xml
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc      1017 Jun  5 03:34 memory_monitor_summary.json
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc   1598969 Jun  5 03:34 agis_ddmendpoints.agis.ALL.json
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc    387718 Jun  5 03:34 log.45006595._055163.job.log.tgz.1
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc        95 Jun  5 03:36 pilot_heartbeat.json
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc      7688 Jun  5 03:36 heartbeat.json
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc      4603 Jun  5 03:36 pilotlog.txt
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc   1241653 Jun  5 03:36 log.45006595._055163.job.log.1
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc       357 Jun  5 03:36 output.list
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:36 runtime_log
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc   1648640 Jun  5 03:36 result.tar.gz
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc       657 Jun  5 03:36 vGHODmIrxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOenKDma9jxYn.diag
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc      8673 Jun  5 03:36 runtime_log.err
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc      8192 Jun  5 06:32 boinc_mmap_file
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc        28 Jun  5 06:32 wrapper_checkpoint.txt
[2025-06-05 06:32:47] -rw-r--r--. 1 boinc boinc     20487 Jun  5 06:32 stderr.txt
[2025-06-05 06:32:47] HITS file was successfully produced:
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc 178678734 Jun  5 03:33 shared/HITS.pool.root.1
[2025-06-05 06:32:47]  *** Contents of shared directory: ***
[2025-06-05 06:32:47] total 385000
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc 213379142 Jun  4 23:30 ATLAS.root_0
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc     15093 Jun  4 23:30 start_atlas.sh
[2025-06-05 06:32:47] -rw-r--r--. 2 boinc boinc    508886 Jun  4 23:30 input.tar.gz
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc 178678734 Jun  5 03:33 HITS.pool.root.1
[2025-06-05 06:32:47] -rw-------. 1 boinc boinc   1648640 Jun  5 03:36 result.tar.gz
06:32:49 (27935): run_atlas exited; CPU time 51464.022908
06:32:49 (27935): called boinc_finish(0)

</stderr_txt>
]]>

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