Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:02:17 (2475286): wrapper (7.7.26015): starting
08:02:17 (2475286): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 08:02:17] Arguments: --nthreads 8
[2025-06-04 08:02:17] Threads: 8
[2025-06-04 08:02:17] Checking for CVMFS
[2025-06-04 08:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 08:02:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 08:02:17] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 08:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 08:02:18] 2.12.6.0 5697 1313 222160 146779 0 706 29205094 32935936 32846 16776704 0 18966575 99.704 10287179 20351 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 08:02:18] CVMFS is ok
[2025-06-04 08:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 08:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 08:02:18] Further information can be found at the LHC@home message board.
[2025-06-04 08:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 08:02:18] Checking for apptainer binary...
[2025-06-04 08:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 08:02:18] Running /usr/bin/apptainer --version
[2025-06-04 08:02:18] apptainer version 1.4.1-1.el9
[2025-06-04 08:02:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 08:02:18] c7-3-17.aglt2.org
[2025-06-04 08:02:18] apptainer works
[2025-06-04 08:02:18] Set ATHENA_PROC_NUMBER=8
[2025-06-04 08:02:18] Set ATHENA_CORE_NUMBER=8
[2025-06-04 08:02:18] Starting ATLAS job with PandaID=6678391541
[2025-06-04 08:02:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:20:03 (2475286): BOINC client no longer exists - exiting
09:20:03 (2475286): timer handler: client dead, exiting
09:29:58 (3247273): wrapper (7.7.26015): starting
09:29:58 (3247273): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 09:29:58] Arguments: --nthreads 8
[2025-06-04 09:29:58] Threads: 8
[2025-06-04 09:29:58] This job has been restarted, cleaning up previous attempt
[2025-06-04 09:29:58] Checking for CVMFS
[2025-06-04 09:29:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 09:29:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 09:29:58] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 09:29:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 09:29:59] 2.12.6.0 5697 1401 190380 146781 0 143 31116563 32935936 32176 16776704 0 19802945 99.700 10963751 20176 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 09:29:59] CVMFS is ok
[2025-06-04 09:29:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 09:29:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 09:29:59] Further information can be found at the LHC@home message board.
[2025-06-04 09:29:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 09:29:59] Checking for apptainer binary...
[2025-06-04 09:29:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 09:29:59] Running /usr/bin/apptainer --version
[2025-06-04 09:29:59] apptainer version 1.4.1-1.el9
[2025-06-04 09:29:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 09:29:59] c7-3-17.aglt2.org
[2025-06-04 09:29:59] apptainer works
[2025-06-04 09:29:59] Set ATHENA_PROC_NUMBER=8
[2025-06-04 09:29:59] Set ATHENA_CORE_NUMBER=8
[2025-06-04 09:29:59] Starting ATLAS job with PandaID=6678391541
[2025-06-04 09:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:17:50]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:17:50] 2025-06-04 15:17:37,232 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:17:50] 2025-06-04 15:17:37,232 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:17:50] 2025-06-04 15:17:37,232 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:17:50] 2025-06-04 15:17:37,234 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:17:50] 2025-06-04 15:17:37,235 | INFO     | sum of square deviations: 369288848.4150944
[2025-06-04 11:17:50] 2025-06-04 15:17:37,235 | INFO     | sum of deviations: 24942675490.999985
[2025-06-04 11:17:50] 2025-06-04 15:17:37,235 | INFO     | mean x: 1749047041.528302
[2025-06-04 11:17:50] 2025-06-04 15:17:37,235 | INFO     | mean y: 2095693.5
[2025-06-04 11:17:50] 2025-06-04 15:17:37,236 | INFO     | -- intersect: -118132835709.29411
[2025-06-04 11:17:50] 2025-06-04 15:17:37,236 | INFO     | intersect: -118132835709.29411
[2025-06-04 11:17:50] 2025-06-04 15:17:37,236 | INFO     | chi2: 4.206428432847924
[2025-06-04 11:17:50] 2025-06-04 15:17:37,236 | INFO     | sum of square deviations: 319456270.9108916
[2025-06-04 11:17:50] 2025-06-04 15:17:37,236 | INFO     | sum of deviations: 29856956805.405956
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | mean x: 1749046889.029703
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | mean y: 2110084.198019802
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | -- intersect: -163466953357.52722
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | intersect: -163466953357.52722
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | chi2: 3.5164233460623646
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | current chi2=3.5164233460623646 (change=16.40358555484557 %)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | right removable region: 100
[2025-06-04 11:17:50] 2025-06-04 15:17:37,237 | INFO     | sum of square deviations: 319454440.9108916
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | sum of deviations: 2699696486.7029724
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | mean x: 1749047194.029703
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | mean y: 2163415.099009901
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | -- intersect: -14778963281.201336
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | intersect: -14778963281.201336
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | chi2: 1.6889113035522674
[2025-06-04 11:17:50] 2025-06-04 15:17:37,238 | INFO     | current chi2=1.6889113035522674 (change=59.849279964836924 %)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | sum of square deviations: 274317795.90625
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | sum of deviations: -10460170529.90625
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | mean x: 1749047346.53125
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | mean y: 2207566.1354166665
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | -- intersect: 66696143514.24089
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | intersect: 66696143514.24089
[2025-06-04 11:17:50] 2025-06-04 15:17:37,239 | INFO     | chi2: 0.7634523506485212
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | current chi2=0.7634523506485212 (change=54.79618443888907 %)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | sum of square deviations: 233646350.90109906
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | sum of deviations: -10804705145.967033
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | mean x: 1749047499.032967
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | mean y: 2208825.989010989
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | -- intersect: 80884886601.43454
[2025-06-04 11:17:50] 2025-06-04 15:17:37,240 | INFO     | intersect: 80884886601.43454
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | chi2: 0.7502745063458746
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | current chi2=0.7502745063458746 (change=1.7260860211449534 %)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | left removable region: 30
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | sum of square deviations: 106339991.37142862
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | sum of deviations: -5105284825.742859
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | mean x: 1749047773.5428572
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | mean y: 2233622.4142857143
[2025-06-04 11:17:50] 2025-06-04 15:17:37,241 | INFO     | -- intersect: 83972402724.44814
[2025-06-04 11:17:50] 2025-06-04 15:17:37,242 | INFO     | intersect: 83972402724.44814
[2025-06-04 11:17:50] 2025-06-04 15:17:37,242 | INFO     | chi2: 0.03554727626618933
[2025-06-04 11:17:50] 2025-06-04 15:17:37,242 | INFO     | -- intersect: 83972402724.44814
[2025-06-04 11:17:50] 2025-06-04 15:17:37,242 | INFO     | current memory leak: -48.01 B/s (using 70 data points, chi2=0.04)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,242 | INFO     | ..............................
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . Timing measurements:
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . get job = 0 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . initial setup = 1 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . payload setup = 7 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . stage-in = 0 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . payload execution = 6411 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . stage-out = 1 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | . log creation = 0 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,243 | INFO     | ..............................
[2025-06-04 11:17:50] 2025-06-04 15:17:37,320 | INFO     | 
[2025-06-04 11:17:50] 2025-06-04 15:17:37,320 | INFO     | job summary report
[2025-06-04 11:17:50] 2025-06-04 15:17:37,320 | INFO     | --------------------------------------------------
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | PanDA job id: 6678391541
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | task id: 45006595
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | errors: (none)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | pilot state: finished 
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | transexitcode: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | exeerrorcode: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | exeerrordiag: 
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | exitcode: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | exitmsg: OK
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | cpuconsumptiontime: 28918 s
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | nevents: 400
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | neventsw: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | pid: 3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | pgrp: 3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | corecount: 8
[2025-06-04 11:17:50] 2025-06-04 15:17:37,321 | INFO     | event service: False
[2025-06-04 11:17:50] 2025-06-04 15:17:37,322 | INFO     | sizes: {0: 2397171, 1: 2397370, 5: 2397576, 11: 2397632, 6423: 2424534, 6425: 2433659, 6432: 2433773}
[2025-06-04 11:17:50] 2025-06-04 15:17:37,322 | INFO     | --------------------------------------------------
[2025-06-04 11:17:50] 2025-06-04 15:17:37,322 | INFO     | 
[2025-06-04 11:17:50] 2025-06-04 15:17:37,322 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 11:17:50] 2025-06-04 15:17:37,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,341 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,341 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,342 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | job 6678391541 has completed (purged errors)
[2025-06-04 11:17:50] 2025-06-04 15:17:37,343 | INFO     | overall cleanup function is called
[2025-06-04 11:17:50] 2025-06-04 15:17:38,357 | INFO     | --- collectZombieJob: --- 10, [3280533]
[2025-06-04 11:17:50] 2025-06-04 15:17:38,358 | INFO     | zombie collector waiting for pid 3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:38,358 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:17:50] 2025-06-04 15:17:38,358 | INFO     | collected zombie processes
[2025-06-04 11:17:50] 2025-06-04 15:17:38,358 | INFO     | will attempt to kill all subprocesses of pid=3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:38,751 | INFO     | process IDs to be killed: [3280533] (in reverse order)
[2025-06-04 11:17:50] 2025-06-04 15:17:38,902 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:17:50] 2025-06-04 15:17:38,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:17:50] 2025-06-04 15:17:38,923 | INFO     | did not find any defunct processes belonging to 3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:38,943 | INFO     | did not find any defunct processes belonging to 3280533
[2025-06-04 11:17:50] 2025-06-04 15:17:38,944 | INFO     | ready for new job
[2025-06-04 11:17:50] 2025-06-04 15:17:38,944 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:17:50] 2025-06-04 15:17:38,946 | INFO     | **************************************
[2025-06-04 11:17:50] 2025-06-04 15:17:38,946 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:17:50] 2025-06-04 15:17:38,946 | INFO     | **************************************
[2025-06-04 11:17:50] 2025-06-04 15:17:38,946 | INFO     | 
[2025-06-04 11:17:50] 2025-06-04 15:17:38,965 | INFO     | architecture information:
[2025-06-04 11:17:50] 2025-06-04 15:17:38,965 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:17:50] 2025-06-04 15:17:38,983 | INFO     | cat /etc/os-release:
[2025-06-04 11:17:50] NAME="CentOS Linux"
[2025-06-04 11:17:50] VERSION="7 (Core)"
[2025-06-04 11:17:50] ID="centos"
[2025-06-04 11:17:50] ID_LIKE="rhel fedora"
[2025-06-04 11:17:50] VERSION_ID="7"
[2025-06-04 11:17:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:17:50] ANSI_COLOR="0;31"
[2025-06-04 11:17:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:17:50] HOME_URL="https://www.centos.org/"
[2025-06-04 11:17:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:17:50] 
[2025-06-04 11:17:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:17:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:17:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:17:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:17:50] 
[2025-06-04 11:17:50] 2025-06-04 15:17:38,983 | INFO     | **************************************
[2025-06-04 11:17:50] 2025-06-04 15:17:39,486 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 11:17:50] 2025-06-04 15:17:39,506 | INFO     | sufficient remaining disk space (76032245760 B)
[2025-06-04 11:17:50] 2025-06-04 15:17:39,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:17:50] 2025-06-04 15:17:39,507 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:17:50] 2025-06-04 15:17:39,507 | INFO     | update_server=False
[2025-06-04 11:17:50] 2025-06-04 15:17:39,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:17:50] 2025-06-04 15:17:39,597 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 11:17:50] 2025-06-04 15:17:39,604 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 11:17:50] 2025-06-04 15:17:39,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:17:50] 2025-06-04 15:17:39,604 | INFO     | will abort loop
[2025-06-04 11:17:50] 2025-06-04 15:17:39,751 | INFO     | all data control threads have been joined
[2025-06-04 11:17:50] 2025-06-04 15:17:39,829 | INFO     | all payload control threads have been joined
[2025-06-04 11:17:50] 2025-06-04 15:17:40,251 | INFO     | PID=3258650 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 11:17:50] 2025-06-04 15:17:40,251 | INFO     | .. there are 39 such processes running
[2025-06-04 11:17:50] 2025-06-04 15:17:40,251 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:17:50] 2025-06-04 15:17:40,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:17:50] 2025-06-04 15:17:40,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:17:50] 2025-06-04 15:17:40,512 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,514 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,609 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,756 | INFO     | [data] control thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,775 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,790 | INFO     | all job control threads have been joined
[2025-06-04 11:17:50] 2025-06-04 15:17:40,834 | INFO     | [payload] control thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:40,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:17:50] 2025-06-04 15:17:41,056 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:17:50] 2025-06-04 15:17:41,206 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,223 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,478 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,578 | INFO     | [job] validate thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,646 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,651 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:41,796 | INFO     | [job] control thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:42,332 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:17:50] 2025-06-04 15:17:42,985 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:43,337 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:45,062 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:17:50] 2025-06-04 15:17:45,070 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139998295512896)>', '<ExcThread(monitor, started 139997646665472)>']
[2025-06-04 11:17:50] 2025-06-04 15:17:45,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:17:50] 2025-06-04 15:17:45,276 | INFO     | [monitor] control thread has ended
[2025-06-04 11:17:50] 2025-06-04 15:17:50,097 | INFO     | all workflow threads have been joined
[2025-06-04 11:17:50] 2025-06-04 15:17:50,098 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:17:50] 2025-06-04 15:17:50,099 | INFO     | traces error code: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:50,099 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:17:50] 2025-06-04 15:17:50,272 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:17:50] 2025-06-04 15:17:50,274 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:17:50] 2025-06-04 15:17:50,277 [wrapper] pilotpid: 3258650
[2025-06-04 11:17:50] 2025-06-04 15:17:50,280 [wrapper] Pilot exit status: 0
[2025-06-04 11:17:50] 2025-06-04 15:17:50,293 [wrapper] pandaids: 6678391541 6678391541
[2025-06-04 11:17:50] 2025-06-04 15:17:50,399 [wrapper] cleanup supervisor_pilot 3978276 3258652
[2025-06-04 11:17:50] 2025-06-04 15:17:50,402 [wrapper] Test setup, not cleaning
[2025-06-04 11:17:50] 2025-06-04 15:17:50,405 [wrapper] apfmon messages muted
[2025-06-04 11:17:50] 2025-06-04 15:17:50,407 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:17:50] 2025-06-04 15:17:50,409 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:17:50]  *** Error codes and diagnostics ***
[2025-06-04 11:17:50]     "exeErrorCode": 0,
[2025-06-04 11:17:50]     "exeErrorDiag": "",
[2025-06-04 11:17:50]     "pilotErrorCode": 0,
[2025-06-04 11:17:50]     "pilotErrorDiag": "",
[2025-06-04 11:17:50]  *** Listing of results directory ***
[2025-06-04 11:17:50] total 600928
[2025-06-04 11:17:50] drwx------. 4 boincer umatlas      4096 Apr  3 04:00 pilot3
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 03:04 pilot3.tar.gz
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:29 queuedata.json
[2025-06-04 11:17:50] -rwx------. 1 boincer umatlas     37140 Jun  4 03:29 runpilot2-wrapper.sh
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas       100 Jun  4 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:17:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 08:02 run_atlas
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas       105 Jun  4 08:02 job.xml
[2025-06-04 11:17:50] -rw-r--r--. 3 boincer umatlas 215443568 Jun  4 08:02 EVNT.45006593._002197.pool.root.1
[2025-06-04 11:17:50] -rw-r--r--. 3 boincer umatlas 215443568 Jun  4 08:02 ATLAS.root_0
[2025-06-04 11:17:50] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:02 start_atlas.sh
[2025-06-04 11:17:50] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 08:02 shared
[2025-06-04 11:17:50] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 08:02 input.tar.gz
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas         0 Jun  4 08:02 boinc_lockfile
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 09:29 pandaJob.out
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas    986819 Jun  4 09:30 agis_schedconf.cvmfs.json
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas      6935 Jun  4 11:13 init_data.xml
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas 178846213 Jun  4 11:17 HITS.45006595._054903.pool.root.1
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas        96 Jun  4 11:17 pilot_heartbeat.json
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas       531 Jun  4 11:17 boinc_task_state.xml
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas      1047 Jun  4 11:17 memory_monitor_summary.json
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas   1598969 Jun  4 11:17 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas    311144 Jun  4 11:17 log.45006595._054903.job.log.tgz.1
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas      7709 Jun  4 11:17 heartbeat.json
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas        28 Jun  4 11:17 wrapper_checkpoint.txt
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 11:17 boinc_mmap_file
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas      4935 Jun  4 11:17 pilotlog.txt
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas    585129 Jun  4 11:17 log.45006595._054903.job.log.1
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas       357 Jun  4 11:17 output.list
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas       620 Jun  4 11:17 runtime_log
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas    911360 Jun  4 11:17 result.tar.gz
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas      8739 Jun  4 11:17 runtime_log.err
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas       780 Jun  4 11:17 KhKLDmSkxg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmpuaKDmOXgwUn.diag
[2025-06-04 11:17:50] -rw-r--r--. 1 boincer umatlas     23229 Jun  4 11:17 stderr.txt
[2025-06-04 11:17:50] HITS file was successfully produced:
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas 178846213 Jun  4 11:17 shared/HITS.pool.root.1
[2025-06-04 11:17:50]  *** Contents of shared directory: ***
[2025-06-04 11:17:50] total 386464
[2025-06-04 11:17:50] -rw-r--r--. 3 boincer umatlas 215443568 Jun  4 08:02 ATLAS.root_0
[2025-06-04 11:17:50] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 08:02 start_atlas.sh
[2025-06-04 11:17:50] -rw-r--r--. 2 boincer umatlas    508883 Jun  4 08:02 input.tar.gz
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas 178846213 Jun  4 11:17 HITS.pool.root.1
[2025-06-04 11:17:50] -rw-------. 1 boincer umatlas    911360 Jun  4 11:17 result.tar.gz
11:17:52 (3247273): run_atlas exited; CPU time 29148.759042
11:17:52 (3247273): called boinc_finish(0)

</stderr_txt>
]]>

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