Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:25:59 (3760387): wrapper (7.7.26015): starting
13:25:59 (3760387): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 13:25:59] Arguments: --nthreads 4
[2025-06-04 13:25:59] Threads: 4
[2025-06-04 13:25:59] Checking for CVMFS
[2025-06-04 13:25:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:26:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:26:00] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:26:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:26:00] 2.12.7.0 963705 1253 55944 146780 2 187 3542900 4096000 7300 130560 0 7552753 99.998 317691 1535 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-06-04 13:26:00] CVMFS is ok
[2025-06-04 13:26:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:26:00] Checking for apptainer binary...
[2025-06-04 13:26:00] apptainer is not installed, using version from CVMFS
[2025-06-04 13:26:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:26:00] senture-z10pe-l
[2025-06-04 13:26:00] apptainer works
[2025-06-04 13:26:00] Set ATHENA_PROC_NUMBER=4
[2025-06-04 13:26:00] Set ATHENA_CORE_NUMBER=4
[2025-06-04 13:26:00] Starting ATLAS job with PandaID=6678390267
[2025-06-04 13:26:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 16:03:52]  *** The last 200 lines of the pilot log: ***
[2025-06-04 16:03:52] 2025-06-04 15:03:39,087 | INFO     | using path: /var/lib/boinc-client/slots/11/PanDA_Pilot-6678390267/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,088 | INFO     | extracted standard info from prmon json
[2025-06-04 16:03:52] 2025-06-04 15:03:39,088 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 16:03:52] 2025-06-04 15:03:39,089 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 16:03:52] 2025-06-04 15:03:39,089 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 16:03:52] 2025-06-04 15:03:39,089 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 16:03:52] 2025-06-04 15:03:39,092 | INFO     | fitting pss+swap vs Time
[2025-06-04 16:03:52] 2025-06-04 15:03:39,092 | INFO     | sum of square deviations: 1154663510.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | sum of deviations: 6488128116.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | mean x: 1749044694.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | mean y: 2275975.393548387
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | -- intersect: -9825718030.654167
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | intersect: -9825718030.654167
[2025-06-04 16:03:52] 2025-06-04 15:03:39,093 | INFO     | chi2: 1.783029101518317
[2025-06-04 16:03:52] 2025-06-04 15:03:39,094 | INFO     | sum of square deviations: 1046484737.5
[2025-06-04 16:03:52] 2025-06-04 15:03:39,094 | INFO     | sum of deviations: 14858420870.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,094 | INFO     | mean x: 1749044541.5
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | mean y: 2287452.72
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | -- intersect: -24831366576.54689
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | intersect: -24831366576.54689
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | chi2: 1.1157813472736178
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | current chi2=1.1157813472736178 (change=37.42214603656847 %)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,095 | INFO     | sum of square deviations: 945282840.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | sum of deviations: 14318975605.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | mean x: 1749044389.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | mean y: 2286639.544827586
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | -- intersect: -26491925334.252487
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | intersect: -26491925334.252487
[2025-06-04 16:03:52] 2025-06-04 15:03:39,096 | INFO     | chi2: 1.116708814700299
[2025-06-04 16:03:52] 2025-06-04 15:03:39,097 | INFO     | current chi2=1.116708814700299 (change=-0.08312268608428552 %)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,097 | INFO     | right removable region: 144
[2025-06-04 16:03:52] 2025-06-04 15:03:39,097 | INFO     | sum of square deviations: 1046484737.5
[2025-06-04 16:03:52] 2025-06-04 15:03:39,097 | INFO     | sum of deviations: -9167912711.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | mean x: 1749044846.5
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | mean y: 2297624.7333333334
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | -- intersect: 15325111141.004414
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | intersect: 15325111141.004414
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | chi2: 0.686610121267897
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | current chi2=0.686610121267897 (change=61.49192850059361 %)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,098 | INFO     | sum of square deviations: 945282840.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,099 | INFO     | sum of deviations: -9173996607.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,099 | INFO     | mean x: 1749044999.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,099 | INFO     | mean y: 2297630.4068965516
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | -- intersect: 16976828646.241606
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | intersect: 16976828646.241606
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | chi2: 0.6865952098454686
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | current chi2=0.6865952098454686 (change=0.002171745211218399 %)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | left removable region: 20
[2025-06-04 16:03:52] 2025-06-04 15:03:39,100 | INFO     | sum of square deviations: 591173875.0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | sum of deviations: -632017522.9999995
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | mean x: 1749044968.5
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | mean y: 2310236.3225806453
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | -- intersect: 1872195079.6049094
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | intersect: 1872195079.6049094
[2025-06-04 16:03:52] 2025-06-04 15:03:39,101 | INFO     | chi2: 0.0016176541344498823
[2025-06-04 16:03:52] 2025-06-04 15:03:39,102 | INFO     | -- intersect: 1872195079.6049094
[2025-06-04 16:03:52] 2025-06-04 15:03:39,102 | INFO     | current memory leak: -1.07 B/s (using 124 data points, chi2=0.00)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,102 | INFO     | ..............................
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . Timing measurements:
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . get job = 0 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . initial setup = 1 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . payload setup = 7 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . stage-in = 0 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . payload execution = 9412 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . stage-out = 0 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | . log creation = 0 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,103 | INFO     | ..............................
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | 
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | job summary report
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | --------------------------------------------------
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | PanDA job id: 6678390267
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | task id: 45006595
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | errors: (none)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | pilot state: finished 
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | transexitcode: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | exeerrorcode: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | exeerrordiag: 
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | exitcode: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | exitmsg: OK
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | cpuconsumptiontime: 36237 s
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | nevents: 400
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | neventsw: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | pid: 3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | pgrp: 3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | corecount: 4
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | event service: False
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | sizes: {0: 2397350, 4: 2397556, 11: 2397584, 9423: 2425627, 9424: 2434584, 9427: 2434640, 9434: 2434938}
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | --------------------------------------------------
[2025-06-04 16:03:52] 2025-06-04 15:03:39,192 | INFO     | 
[2025-06-04 16:03:52] 2025-06-04 15:03:39,193 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/11
[2025-06-04 16:03:52] 2025-06-04 15:03:39,227 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,227 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,227 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | job 6678390267 has completed (purged errors)
[2025-06-04 16:03:52] 2025-06-04 15:03:39,229 | INFO     | overall cleanup function is called
[2025-06-04 16:03:52] 2025-06-04 15:03:40,237 | INFO     | --- collectZombieJob: --- 10, [3824399]
[2025-06-04 16:03:52] 2025-06-04 15:03:40,237 | INFO     | zombie collector waiting for pid 3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:40,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 16:03:52] 2025-06-04 15:03:40,238 | INFO     | collected zombie processes
[2025-06-04 16:03:52] 2025-06-04 15:03:40,238 | INFO     | will attempt to kill all subprocesses of pid=3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:40,515 | INFO     | process IDs to be killed: [3824399] (in reverse order)
[2025-06-04 16:03:52] 2025-06-04 15:03:40,641 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 16:03:52] 2025-06-04 15:03:40,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 16:03:52] 2025-06-04 15:03:40,650 | INFO     | did not find any defunct processes belonging to 3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:40,658 | INFO     | did not find any defunct processes belonging to 3824399
[2025-06-04 16:03:52] 2025-06-04 15:03:40,658 | INFO     | ready for new job
[2025-06-04 16:03:52] 2025-06-04 15:03:40,658 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 16:03:52] 2025-06-04 15:03:40,660 | INFO     | **************************************
[2025-06-04 16:03:52] 2025-06-04 15:03:40,660 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 16:03:52] 2025-06-04 15:03:40,660 | INFO     | **************************************
[2025-06-04 16:03:52] 2025-06-04 15:03:40,660 | INFO     | 
[2025-06-04 16:03:52] 2025-06-04 15:03:40,663 | INFO     | pilot is running in a VM
[2025-06-04 16:03:52] 2025-06-04 15:03:40,663 | INFO     | architecture information:
[2025-06-04 16:03:52] 2025-06-04 15:03:40,664 | INFO     | executing command: cat /etc/os-release
[2025-06-04 16:03:52] 2025-06-04 15:03:40,681 | INFO     | cat /etc/os-release:
[2025-06-04 16:03:52] NAME="CentOS Linux"
[2025-06-04 16:03:52] VERSION="7 (Core)"
[2025-06-04 16:03:52] ID="centos"
[2025-06-04 16:03:52] ID_LIKE="rhel fedora"
[2025-06-04 16:03:52] VERSION_ID="7"
[2025-06-04 16:03:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 16:03:52] ANSI_COLOR="0;31"
[2025-06-04 16:03:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 16:03:52] HOME_URL="https://www.centos.org/"
[2025-06-04 16:03:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 16:03:52] 
[2025-06-04 16:03:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 16:03:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 16:03:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 16:03:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 16:03:52] 
[2025-06-04 16:03:52] 2025-06-04 15:03:40,681 | INFO     | **************************************
[2025-06-04 16:03:52] 2025-06-04 15:03:41,184 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/11
[2025-06-04 16:03:52] 2025-06-04 15:03:41,208 | INFO     | sufficient remaining disk space (111395471360 B)
[2025-06-04 16:03:52] 2025-06-04 15:03:41,208 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 16:03:52] 2025-06-04 15:03:41,208 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 16:03:52] 2025-06-04 15:03:41,209 | INFO     | update_server=False
[2025-06-04 16:03:52] 2025-06-04 15:03:41,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 16:03:52] 2025-06-04 15:03:41,209 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:03:52] 2025-06-04 15:03:41,209 | INFO     | aborting loop
[2025-06-04 16:03:52] 2025-06-04 15:03:41,209 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 16:03:52] 2025-06-04 15:03:41,473 | INFO     | all data control threads have been joined
[2025-06-04 16:03:52] 2025-06-04 15:03:41,513 | INFO     | all job control threads have been joined
[2025-06-04 16:03:52] 2025-06-04 15:03:41,897 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 16:03:52] 2025-06-04 15:03:41,897 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 16:03:52] 2025-06-04 15:03:41,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 16:03:52] 2025-06-04 15:03:42,214 | INFO     | [job] retrieve thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:42,214 | INFO     | [job] job monitor thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:42,479 | INFO     | [data] control thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:42,490 | INFO     | all payload control threads have been joined
[2025-06-04 16:03:52] 2025-06-04 15:03:42,519 | INFO     | [job] control thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:42,662 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:42,774 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 16:03:52] 2025-06-04 15:03:43,202 | INFO     | [job] validate thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,215 | INFO     | [data] copytool_out thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,260 | INFO     | [payload] failed_post thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,362 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,426 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,496 | INFO     | [payload] control thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,538 | INFO     | [data] copytool_in thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,585 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:43,642 | INFO     | [payload] validate_post thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:44,202 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 16:03:52] 2025-06-04 15:03:45,207 | INFO     | [job] queue monitor thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:46,780 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 16:03:52] 2025-06-04 15:03:47,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128156720973632)>', '<ExcThread(monitor, started 128155893352192)>']
[2025-06-04 16:03:52] 2025-06-04 15:03:47,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 16:03:52] 2025-06-04 15:03:47,928 | INFO     | [monitor] control thread has ended
[2025-06-04 16:03:52] 2025-06-04 15:03:52,657 | INFO     | all workflow threads have been joined
[2025-06-04 16:03:52] 2025-06-04 15:03:52,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 16:03:52] 2025-06-04 15:03:52,657 | INFO     | traces error code: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:52,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 16:03:52] 2025-06-04 15:03:52,817 [wrapper] ==== pilot stdout END ====
[2025-06-04 16:03:52] 2025-06-04 15:03:52,820 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 16:03:52] 2025-06-04 15:03:52,824 [wrapper] pilotpid: 3782835
[2025-06-04 16:03:52] 2025-06-04 15:03:52,827 [wrapper] Pilot exit status: 0
[2025-06-04 16:03:52] 2025-06-04 15:03:52,838 [wrapper] pandaids: 6678390267
[2025-06-04 16:03:52] 2025-06-04 15:03:52,895 [wrapper] cleanup supervisor_pilot 4160047 3782836
[2025-06-04 16:03:52] 2025-06-04 15:03:52,899 [wrapper] Test setup, not cleaning
[2025-06-04 16:03:52] 2025-06-04 15:03:52,902 [wrapper] apfmon messages muted
[2025-06-04 16:03:52] 2025-06-04 15:03:52,905 [wrapper] ==== wrapper stdout END ====
[2025-06-04 16:03:52] 2025-06-04 15:03:52,908 [wrapper] ==== wrapper stderr END ====
[2025-06-04 16:03:52]  *** Error codes and diagnostics ***
[2025-06-04 16:03:52]     "exeErrorCode": 0,
[2025-06-04 16:03:52]     "exeErrorDiag": "",
[2025-06-04 16:03:52]     "pilotErrorCode": 0,
[2025-06-04 16:03:52]     "pilotErrorDiag": "",
[2025-06-04 16:03:52]  *** Listing of results directory ***
[2025-06-04 16:03:52] total 392168
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc    495897 Jun  4 08:04 pilot3.tar.gz
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc      5111 Jun  4 08:22 queuedata.json
[2025-06-04 16:03:52] -rwx------ 1 boinc boinc     37140 Jun  4 08:22 runpilot2-wrapper.sh
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc       100 Jun  4 13:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 16:03:52] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 13:25 run_atlas
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc       105 Jun  4 13:25 job.xml
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc      6663 Jun  4 13:25 init_data.xml
[2025-06-04 16:03:52] -rw-r--r-- 2 boinc boinc 218217604 Jun  4 13:25 EVNT.45006593._002189.pool.root.1
[2025-06-04 16:03:52] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:25 start_atlas.sh
[2025-06-04 16:03:52] drwxrwx--x 2 boinc boinc      4096 Jun  4 13:25 shared
[2025-06-04 16:03:52] -rw-r--r-- 2 boinc boinc    508885 Jun  4 13:25 input.tar.gz
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc         0 Jun  4 13:25 boinc_lockfile
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc      2525 Jun  4 13:26 pandaJob.out
[2025-06-04 16:03:52] -rw------- 1 boinc boinc    986811 Jun  4 13:26 agis_schedconf.cvmfs.json
[2025-06-04 16:03:52] -rw------- 1 boinc boinc   1598969 Jun  4 13:26 agis_ddmendpoints.agis.ALL.json
[2025-06-04 16:03:52] drwx------ 4 boinc boinc      4096 Jun  4 13:26 pilot3
[2025-06-04 16:03:52] -rw------- 1 boinc boinc 177174289 Jun  4 16:02 HITS.45006595._054718.pool.root.1
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc       530 Jun  4 16:03 boinc_task_state.xml
[2025-06-04 16:03:52] -rw------- 1 boinc boinc        95 Jun  4 16:03 pilot_heartbeat.json
[2025-06-04 16:03:52] -rw------- 1 boinc boinc      1042 Jun  4 16:03 memory_monitor_summary.json
[2025-06-04 16:03:52] -rw------- 1 boinc boinc    297273 Jun  4 16:03 log.45006595._054718.job.log.tgz.1
[2025-06-04 16:03:52] -rw------- 1 boinc boinc      7684 Jun  4 16:03 heartbeat.json
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc      8192 Jun  4 16:03 boinc_mmap_file
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc        27 Jun  4 16:03 wrapper_checkpoint.txt
[2025-06-04 16:03:52] -rw------- 1 boinc boinc      4424 Jun  4 16:03 pilotlog.txt
[2025-06-04 16:03:52] -rw------- 1 boinc boinc    879480 Jun  4 16:03 log.45006595._054718.job.log.1
[2025-06-04 16:03:52] -rw------- 1 boinc boinc       357 Jun  4 16:03 output.list
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc       620 Jun  4 16:03 runtime_log
[2025-06-04 16:03:52] -rw------- 1 boinc boinc   1198080 Jun  4 16:03 result.tar.gz
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc      8762 Jun  4 16:03 runtime_log.err
[2025-06-04 16:03:52] -rw------- 1 boinc boinc       650 Jun  4 16:03 hjIKDmIdxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmObnKDmT1aDXn.diag
[2025-06-04 16:03:52] -rw-r--r-- 1 boinc boinc     20510 Jun  4 16:03 stderr.txt
[2025-06-04 16:03:53] HITS file was successfully produced:
[2025-06-04 16:03:53] -rw------- 1 boinc boinc 177174289 Jun  4 16:02 shared/HITS.pool.root.1
[2025-06-04 16:03:53]  *** Contents of shared directory: ***
[2025-06-04 16:03:53] total 387824
[2025-06-04 16:03:53] -rw-r--r-- 2 boinc boinc 218217604 Jun  4 13:25 ATLAS.root_0
[2025-06-04 16:03:53] -rw-r--r-- 2 boinc boinc     15093 Jun  4 13:25 start_atlas.sh
[2025-06-04 16:03:53] -rw-r--r-- 2 boinc boinc    508885 Jun  4 13:25 input.tar.gz
[2025-06-04 16:03:53] -rw------- 1 boinc boinc 177174289 Jun  4 16:02 HITS.pool.root.1
[2025-06-04 16:03:53] -rw------- 1 boinc boinc   1198080 Jun  4 16:03 result.tar.gz
16:03:54 (3760387): run_atlas exited; CPU time 36577.292898
16:03:54 (3760387): called boinc_finish(0)

</stderr_txt>
]]>

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