Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:44:03 (3029882): wrapper (7.7.26015): starting
07:44:03 (3029882): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:44:03] Arguments: --nthreads 8
[2025-06-04 07:44:03] Threads: 8
[2025-06-04 07:44:03] Checking for CVMFS
[2025-06-04 07:44:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:44:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:44:03] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:44:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:44:03] 2.12.6.0 6829 1293 181072 146779 0 537 27759311 32935937 6974 16776704 0 18268432 99.879 4147631 35365 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:44:03] CVMFS is ok
[2025-06-04 07:44:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:44:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:44:03] Further information can be found at the LHC@home message board.
[2025-06-04 07:44:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:44:03] Checking for apptainer binary...
[2025-06-04 07:44:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:44:03] Running /usr/bin/apptainer --version
[2025-06-04 07:44:03] apptainer version 1.4.1-1.el9
[2025-06-04 07:44:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:44:03] c6-8-25-3.aglt2.org
[2025-06-04 07:44:03] apptainer works
[2025-06-04 07:44:03] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:44:03] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:44:03] Starting ATLAS job with PandaID=6678390316
[2025-06-04 07:44:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:40:11]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:40:11]  mtime=0
[2025-06-04 08:40:11]  protocol_id=None
[2025-06-04 08:40:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:40:11]  replicas=None
[2025-06-04 08:40:11]  scope=mc23_13p6TeV
[2025-06-04 08:40:11]  status=None
[2025-06-04 08:40:11]  status_code=0
[2025-06-04 08:40:11]  storage_token=
[2025-06-04 08:40:11]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6678390316/log.45006595._054767.job.log.tgz.1
[2025-06-04 08:40:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/8c/log.45006595._054767.job.log.tgz.1
[2025-06-04 08:40:11]  workdir=None
[2025-06-04 08:40:11] ]
[2025-06-04 08:40:11] 2025-06-04 12:39:35,908 | INFO     | transferring file log.45006595._054767.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6678390316/log.45006595._054767.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:40:11] 2025-06-04 12:39:35,908 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6678390316/log.45006595._054767.job.log.tgz.1 /tmp/boinchome/slots/2/log.45006595._054767.job
[2025-06-04 08:40:11] 2025-06-04 12:39:35,923 | INFO     | adding to output.list: log.45006595._054767.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/8c/log.45006595._054767.job.log.tg
[2025-06-04 08:40:11] 2025-06-04 12:39:35,923 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:40:11] 2025-06-04 12:39:35,923 | INFO     | summary of transferred files:
[2025-06-04 08:40:11] 2025-06-04 12:39:35,924 | INFO     |  -- lfn=log.45006595._054767.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:40:11] 2025-06-04 12:39:35,924 | INFO     | stage-out finished correctly
[2025-06-04 08:40:11] 2025-06-04 12:39:36,020 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:40:11] 2025-06-04 12:39:36,567 | WARNING  | process 3043769 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 08:40:11] 2025-06-04 12:39:36,568 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678390316/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:40:11] 2025-06-04 12:39:36,742 | INFO     | number of running child processes to parent process 3043769: 1
[2025-06-04 08:40:11] 2025-06-04 12:39:36,742 | INFO     | maximum number of monitored processes: 6
[2025-06-04 08:40:11] 2025-06-04 12:39:36,954 | INFO     | job 6678390316 has state=finished
[2025-06-04 08:40:11] 2025-06-04 12:39:36,954 | INFO     | preparing for final server update for job 6678390316 in state='finished'
[2025-06-04 08:40:11] 2025-06-04 12:39:36,955 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:40:11] 2025-06-04 12:39:36,955 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:40:11] 2025-06-04 12:39:36,955 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:40:11] 2025-06-04 12:39:36,955 | INFO     | job 6678390316 has finished - writing final server update
[2025-06-04 08:40:11] 2025-06-04 12:39:36,956 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:40:11] 2025-06-04 12:39:36,957 | INFO     | executing command: lscpu
[2025-06-04 08:40:11] 2025-06-04 12:39:37,005 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:40:11] 2025-06-04 12:39:39,244 | INFO     | monitor loop #249: job 0:6678390316 is in state 'finished'
[2025-06-04 08:40:11] 2025-06-04 12:39:39,245 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,330 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 08:40:11] 2025-06-04 12:39:39,337 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3554.1903124999994
[2025-06-04 08:40:11] 2025-06-04 12:39:39,346 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6678390316/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,346 | INFO     | extracted standard info from prmon json
[2025-06-04 08:40:11] 2025-06-04 12:39:39,346 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:40:11] 2025-06-04 12:39:39,346 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:40:11] 2025-06-04 12:39:39,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:40:11] 2025-06-04 12:39:39,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | sum of square deviations: 34277852.0
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | sum of deviations: 3540066039.5
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | mean x: 1749039208.5
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | mean y: 2186917.8125
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | -- intersect: -180630902453.27206
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | intersect: -180630902453.27206
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | chi2: 0.8057730187163673
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | -- intersect: -180630902453.27206
[2025-06-04 08:40:11] 2025-06-04 12:39:39,348 | INFO     | current memory leak: 103.28 B/s (using 48 data points, chi2=0.81)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | could have reported an average CPU frequency of 3599 MHz (5 samples)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | ..............................
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . Timing measurements:
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . get job = 0 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . initial setup = 2 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . payload setup = 3 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . stage-in = 0 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . payload execution = 3304 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . stage-out = 0 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | . log creation = 0 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,349 | INFO     | ..............................
[2025-06-04 08:40:11] 2025-06-04 12:39:39,397 | INFO     | 
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | job summary report
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | --------------------------------------------------
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | PanDA job id: 6678390316
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | task id: 45006595
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | errors: (none)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | pilot state: finished 
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | transexitcode: 0
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | exeerrorcode: 0
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | exeerrordiag: 
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | exitcode: 0
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | exitmsg: OK
[2025-06-04 08:40:11] 2025-06-04 12:39:39,398 | INFO     | cpuconsumptiontime: 21275 s
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | nevents: 400
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | neventsw: 0
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | pid: 3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | pgrp: 3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | corecount: 8
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | event service: False
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | sizes: {0: 2397683, 2: 2397945, 11: 2397973, 3311: 2423489, 3312: 2432486, 3316: 2432656}
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | --------------------------------------------------
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | 
[2025-06-04 08:40:11] 2025-06-04 12:39:39,399 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-06-04 08:40:11] 2025-06-04 12:39:39,412 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,412 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,412 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,412 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,413 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,414 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:40:11] 2025-06-04 12:39:39,414 | INFO     | job 6678390316 has completed (purged errors)
[2025-06-04 08:40:11] 2025-06-04 12:39:39,414 | INFO     | overall cleanup function is called
[2025-06-04 08:40:11] 2025-06-04 12:39:40,421 | INFO     | --- collectZombieJob: --- 10, [3043769]
[2025-06-04 08:40:11] 2025-06-04 12:39:40,421 | INFO     | zombie collector waiting for pid 3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:40,421 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:40:11] 2025-06-04 12:39:40,421 | INFO     | collected zombie processes
[2025-06-04 08:40:11] 2025-06-04 12:39:40,421 | INFO     | will attempt to kill all subprocesses of pid=3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:40,600 | INFO     | process IDs to be killed: [3043769] (in reverse order)
[2025-06-04 08:40:11] 2025-06-04 12:39:40,661 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:40:11] 2025-06-04 12:39:40,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:40:11] 2025-06-04 12:39:40,674 | INFO     | did not find any defunct processes belonging to 3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:40,686 | INFO     | did not find any defunct processes belonging to 3043769
[2025-06-04 08:40:11] 2025-06-04 12:39:40,686 | INFO     | ready for new job
[2025-06-04 08:40:11] 2025-06-04 12:39:40,686 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:40:11] 2025-06-04 12:39:40,688 | INFO     | ***************************************
[2025-06-04 08:40:11] 2025-06-04 12:39:40,688 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 08:40:11] 2025-06-04 12:39:40,688 | INFO     | ***************************************
[2025-06-04 08:40:11] 2025-06-04 12:39:40,688 | INFO     | 
[2025-06-04 08:40:11] 2025-06-04 12:39:40,705 | INFO     | architecture information:
[2025-06-04 08:40:11] 2025-06-04 12:39:40,706 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:40:11] 2025-06-04 12:39:40,717 | INFO     | cat /etc/os-release:
[2025-06-04 08:40:11] NAME="CentOS Linux"
[2025-06-04 08:40:11] VERSION="7 (Core)"
[2025-06-04 08:40:11] ID="centos"
[2025-06-04 08:40:11] ID_LIKE="rhel fedora"
[2025-06-04 08:40:11] VERSION_ID="7"
[2025-06-04 08:40:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:40:11] ANSI_COLOR="0;31"
[2025-06-04 08:40:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:40:11] HOME_URL="https://www.centos.org/"
[2025-06-04 08:40:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:40:11] 
[2025-06-04 08:40:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:40:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:40:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:40:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:40:11] 
[2025-06-04 08:40:11] 2025-06-04 12:39:40,718 | INFO     | ***************************************
[2025-06-04 08:40:11] 2025-06-04 12:39:41,220 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-06-04 08:40:11] 2025-06-04 12:39:41,233 | INFO     | sufficient remaining disk space (75773247488 B)
[2025-06-04 08:40:11] 2025-06-04 12:39:41,233 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:40:11] 2025-06-04 12:39:41,233 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:40:11] 2025-06-04 12:39:41,233 | INFO     | update_server=False
[2025-06-04 08:40:11] 2025-06-04 12:39:41,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:40:11] 2025-06-04 12:39:41,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:11] 2025-06-04 12:39:41,234 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:11] 2025-06-04 12:39:41,234 | INFO     | aborting loop
[2025-06-04 08:40:11] 2025-06-04 12:39:41,526 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:40:11] 2025-06-04 12:39:41,608 | INFO     | all data control threads have been joined
[2025-06-04 08:40:11] 2025-06-04 12:39:41,614 | INFO     | all job control threads have been joined
[2025-06-04 08:40:11] 2025-06-04 12:39:41,915 | INFO     | all payload control threads have been joined
[2025-06-04 08:40:11] 2025-06-04 12:39:42,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:40:11] 2025-06-04 12:39:42,238 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,239 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,240 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,590 | INFO     | [job] validate thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,612 | INFO     | [data] control thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,619 | INFO     | [job] control thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,624 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,725 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,899 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:42,920 | INFO     | [payload] control thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:43,531 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:43,600 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:43,628 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:43,633 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:46,119 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:52,121 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:40:11] 2025-06-04 12:39:53,126 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:40:11] 2025-06-04 12:39:54,805 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140684563691328)>', '<ExcThread(monitor, started 140683759298304)>']
[2025-06-04 08:40:11] 2025-06-04 12:39:59,831 | INFO     | all workflow threads have been joined
[2025-06-04 08:40:11] 2025-06-04 12:39:59,831 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:40:11] 2025-06-04 12:39:59,831 | INFO     | traces error code: 0
[2025-06-04 08:40:11] 2025-06-04 12:39:59,832 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | INFO     | PID=3034787 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | INFO     | .. there are 15 such processes running
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | CRITICAL | thread 'MainThread' is not alive
[2025-06-04 08:40:11] 2025-06-04 12:40:10,869 | INFO     | [monitor] control thread has ended
[2025-06-04 08:40:11] 2025-06-04 12:40:11,003 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:40:11] 2025-06-04 12:40:11,005 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:40:11] 2025-06-04 12:40:11,007 [wrapper] pilotpid: 3034787
[2025-06-04 08:40:11] 2025-06-04 12:40:11,009 [wrapper] Pilot exit status: 0
[2025-06-04 08:40:11] 2025-06-04 12:40:11,017 [wrapper] pandaids: 6678390316
[2025-06-04 08:40:11] 2025-06-04 12:40:11,068 [wrapper] cleanup supervisor_pilot 3198187 3034788
[2025-06-04 08:40:11] 2025-06-04 12:40:11,070 [wrapper] Test setup, not cleaning
[2025-06-04 08:40:11] 2025-06-04 12:40:11,072 [wrapper] apfmon messages muted
[2025-06-04 08:40:11] 2025-06-04 12:40:11,074 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:40:11] 2025-06-04 12:40:11,076 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:40:11]  *** Error codes and diagnostics ***
[2025-06-04 08:40:11]     "exeErrorCode": 0,
[2025-06-04 08:40:11]     "exeErrorDiag": "",
[2025-06-04 08:40:11]     "pilotErrorCode": 0,
[2025-06-04 08:40:11]     "pilotErrorDiag": "",
[2025-06-04 08:40:11]  *** Listing of results directory ***
[2025-06-04 08:40:11] total 383380
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 03:24 queuedata.json
[2025-06-04 08:40:11] -rwx------. 1 boincer umatlas     37140 Jun  4 03:25 runpilot2-wrapper.sh
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:40:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:44 run_atlas
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:44 job.xml
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 07:44 EVNT.45006593._002191.pool.root.1
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 08:40:11] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:44 shared
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas    564117 Jun  4 07:44 input.tar.gz
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:44 boinc_lockfile
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:44 pandaJob.out
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas    986812 Jun  4 07:44 agis_schedconf.cvmfs.json
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas   1598969 Jun  4 07:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:40:11] drwx------. 6 boincer umatlas      4096 Jun  4 07:44 pilot3
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas 172932919 Jun  4 08:39 HITS.45006595._054767.pool.root.1
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas        95 Jun  4 08:39 pilot_heartbeat.json
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas       529 Jun  4 08:39 boinc_task_state.xml
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas      1041 Jun  4 08:39 memory_monitor_summary.json
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas    296949 Jun  4 08:39 log.45006595._054767.job.log.tgz.1
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas      7757 Jun  4 08:39 heartbeat.json
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas      6856 Jun  4 08:39 init_data.xml
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:40 boinc_mmap_file
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas        27 Jun  4 08:40 wrapper_checkpoint.txt
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas       893 Jun  4 08:40 pilotlog.txt
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas    347614 Jun  4 08:40 log.45006595._054767.job.log.1
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas       357 Jun  4 08:40 output.list
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:40 runtime_log
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas    665600 Jun  4 08:40 result.tar.gz
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas      8664 Jun  4 08:40 runtime_log.err
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas       651 Jun  4 08:40 iUEODmDgxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAcnKDmlF62dn.diag
[2025-06-04 08:40:11] -rw-r--r--. 1 boincer umatlas     21668 Jun  4 08:40 stderr.txt
[2025-06-04 08:40:11] HITS file was successfully produced:
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas 172932919 Jun  4 08:39 shared/HITS.pool.root.1
[2025-06-04 08:40:11]  *** Contents of shared directory: ***
[2025-06-04 08:40:11] total 379508
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas 214425159 Jun  4 07:44 ATLAS.root_0
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 08:40:11] -rw-r--r--. 2 boincer umatlas    564117 Jun  4 07:44 input.tar.gz
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas 172932919 Jun  4 08:39 HITS.pool.root.1
[2025-06-04 08:40:11] -rw-------. 1 boincer umatlas    665600 Jun  4 08:40 result.tar.gz
08:40:12 (3029882): run_atlas exited; CPU time 21386.272460
08:40:12 (3029882): called boinc_finish(0)

</stderr_txt>
]]>

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