Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:49:29 (1318829): wrapper (7.7.26015): starting
07:49:29 (1318829): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 07:49:29] Arguments: --nthreads 10
[2025-06-04 07:49:29] Threads: 10
[2025-06-04 07:49:29] Checking for CVMFS
[2025-06-04 07:49:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:49:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:49:29] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:49:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:49:29] 2.12.6.0 709574 220719 314272 146779 3 107 17586813 32935936 12532 130560 1 370067718 99.641 358935046 26932 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:49:29] CVMFS is ok
[2025-06-04 07:49:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:49:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:49:29] Further information can be found at the LHC@home message board.
[2025-06-04 07:49:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:49:29] Checking for apptainer binary...
[2025-06-04 07:49:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:49:29] Running /usr/bin/apptainer --version
[2025-06-04 07:49:29] apptainer version 1.4.1-1.el9
[2025-06-04 07:49:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:49:29] c-5-6.aglt2.org
[2025-06-04 07:49:29] apptainer works
[2025-06-04 07:49:29] Set ATHENA_PROC_NUMBER=10
[2025-06-04 07:49:29] Set ATHENA_CORE_NUMBER=10
[2025-06-04 07:49:29] Starting ATLAS job with PandaID=6678390244
[2025-06-04 07:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 09:12:58]  *** The last 200 lines of the pilot log: ***
[2025-06-04 09:12:58]  is_altstaged=None
[2025-06-04 09:12:58]  is_tar=False
[2025-06-04 09:12:58]  lfn=log.45006595._054695.job.log.tgz.1
[2025-06-04 09:12:58]  mtime=0
[2025-06-04 09:12:58]  protocol_id=None
[2025-06-04 09:12:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 09:12:58]  replicas=None
[2025-06-04 09:12:58]  scope=mc23_13p6TeV
[2025-06-04 09:12:58]  status=None
[2025-06-04 09:12:58]  status_code=0
[2025-06-04 09:12:58]  storage_token=
[2025-06-04 09:12:58]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678390244/log.45006595._054695.job.log.tgz.1
[2025-06-04 09:12:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/de/log.45006595._054695.job.log.tgz.1
[2025-06-04 09:12:58]  workdir=None
[2025-06-04 09:12:58] ]
[2025-06-04 09:12:58] 2025-06-04 13:12:34,407 | INFO     | transferring file log.45006595._054695.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678390244/log.45006595._054695.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 09:12:58] 2025-06-04 13:12:34,407 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678390244/log.45006595._054695.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054695.job
[2025-06-04 09:12:58] 2025-06-04 13:12:34,424 | INFO     | adding to output.list: log.45006595._054695.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/de/log.45006595._054695.job.log.tg
[2025-06-04 09:12:58] 2025-06-04 13:12:34,425 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 09:12:58] 2025-06-04 13:12:34,425 | INFO     | summary of transferred files:
[2025-06-04 09:12:58] 2025-06-04 13:12:34,426 | INFO     |  -- lfn=log.45006595._054695.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 09:12:58] 2025-06-04 13:12:34,426 | INFO     | stage-out finished correctly
[2025-06-04 09:12:58] 2025-06-04 13:12:35,743 | WARNING  | process 1328965 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 09:12:58] 2025-06-04 13:12:35,744 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678390244/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:12:58] 2025-06-04 13:12:35,751 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 09:12:58] 2025-06-04 13:12:35,860 | INFO     | job 6678390244 has state=finished
[2025-06-04 09:12:58] 2025-06-04 13:12:35,860 | INFO     | preparing for final server update for job 6678390244 in state='finished'
[2025-06-04 09:12:58] 2025-06-04 13:12:35,862 | INFO     | this job has now completed (state=finished)
[2025-06-04 09:12:58] 2025-06-04 13:12:35,862 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 09:12:58] 2025-06-04 13:12:35,862 | INFO     | log transfer has been attempted: DONE
[2025-06-04 09:12:58] 2025-06-04 13:12:35,862 | INFO     | job 6678390244 has finished - writing final server update
[2025-06-04 09:12:58] 2025-06-04 13:12:35,863 | INFO     | total number of processed events: 400 (read)
[2025-06-04 09:12:58] 2025-06-04 13:12:35,879 | INFO     | executing command: lscpu
[2025-06-04 09:12:58] 2025-06-04 13:12:35,951 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 09:12:58] 2025-06-04 13:12:36,635 | INFO     | PID=1322415 has CPU usage=14.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 09:12:58] 2025-06-04 13:12:36,635 | INFO     | .. there are 27 such processes running
[2025-06-04 09:12:58] 2025-06-04 13:12:36,657 | INFO     | number of running child processes to parent process 1328965: 1
[2025-06-04 09:12:58] 2025-06-04 13:12:36,657 | INFO     | maximum number of monitored processes: 6
[2025-06-04 09:12:58] 2025-06-04 13:12:39,161 | INFO     | monitor loop #363: job 0:6678390244 is in state 'finished'
[2025-06-04 09:12:58] 2025-06-04 13:12:39,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,634 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 09:12:58] 2025-06-04 13:12:39,635 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678390244/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,636 | INFO     | extracted standard info from prmon json
[2025-06-04 09:12:58] 2025-06-04 13:12:39,636 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 09:12:58] 2025-06-04 13:12:39,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 09:12:58] 2025-06-04 13:12:39,637 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 09:12:58] 2025-06-04 13:12:39,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 09:12:58] 2025-06-04 13:12:39,639 | INFO     | fitting pss+swap vs Time
[2025-06-04 09:12:58] 2025-06-04 13:12:39,640 | INFO     | sum of square deviations: 130793150.0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,640 | INFO     | sum of deviations: -540228504.9999998
[2025-06-04 09:12:58] 2025-06-04 13:12:39,640 | INFO     | mean x: 1749040370.0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,640 | INFO     | mean y: 2319322.013333333
[2025-06-04 09:12:58] 2025-06-04 13:12:39,640 | INFO     | -- intersect: 7226562061.558534
[2025-06-04 09:12:58] 2025-06-04 13:12:39,641 | INFO     | intersect: 7226562061.558534
[2025-06-04 09:12:58] 2025-06-04 13:12:39,641 | INFO     | chi2: 1.1132755310117213
[2025-06-04 09:12:58] 2025-06-04 13:12:39,641 | INFO     | -- intersect: 7226562061.558534
[2025-06-04 09:12:58] 2025-06-04 13:12:39,641 | INFO     | current memory leak: -4.13 B/s (using 75 data points, chi2=1.11)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | ..............................
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | . Timing measurements:
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | . get job = 0 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | . initial setup = 3 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | . payload setup = 7 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,642 | INFO     | . stage-in = 0 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,643 | INFO     | . payload execution = 4945 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,643 | INFO     | . stage-out = 0 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,643 | INFO     | . log creation = 0 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,643 | INFO     | ..............................
[2025-06-04 09:12:58] 2025-06-04 13:12:39,755 | INFO     | 
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | job summary report
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | --------------------------------------------------
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | PanDA job id: 6678390244
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | task id: 45006595
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | errors: (none)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | pilot state: finished 
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | transexitcode: 0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | exeerrorcode: 0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | exeerrordiag: 
[2025-06-04 09:12:58] 2025-06-04 13:12:39,756 | INFO     | exitcode: 0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | exitmsg: OK
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | cpuconsumptiontime: 41310 s
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | nevents: 400
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | neventsw: 0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | pid: 1328965
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | pgrp: 1328965
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | corecount: 10
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | event service: False
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | sizes: {0: 2397227, 1: 2397369, 5: 2397575, 11: 2397631, 4957: 2423657, 4958: 2432598, 4960: 2432782, 4964: 2432952}
[2025-06-04 09:12:58] 2025-06-04 13:12:39,757 | INFO     | --------------------------------------------------
[2025-06-04 09:12:58] 2025-06-04 13:12:39,758 | INFO     | 
[2025-06-04 09:12:58] 2025-06-04 13:12:39,758 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | job 6678390244 has completed (purged errors)
[2025-06-04 09:12:58] 2025-06-04 13:12:39,780 | INFO     | overall cleanup function is called
[2025-06-04 09:12:58] 2025-06-04 13:12:40,788 | INFO     | --- collectZombieJob: --- 10, [1328965]
[2025-06-04 09:12:58] 2025-06-04 13:12:40,788 | INFO     | zombie collector waiting for pid 1328965
[2025-06-04 09:12:58] 2025-06-04 13:12:40,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 09:12:58] 2025-06-04 13:12:40,788 | INFO     | collected zombie processes
[2025-06-04 09:12:58] 2025-06-04 13:12:40,789 | INFO     | will attempt to kill all subprocesses of pid=1328965
[2025-06-04 09:12:59] 2025-06-04 13:12:41,178 | INFO     | process IDs to be killed: [1328965] (in reverse order)
[2025-06-04 09:12:59] 2025-06-04 13:12:41,283 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 09:12:59] 2025-06-04 13:12:41,283 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 09:12:59] 2025-06-04 13:12:41,298 | INFO     | did not find any defunct processes belonging to 1328965
[2025-06-04 09:12:59] 2025-06-04 13:12:41,313 | INFO     | did not find any defunct processes belonging to 1328965
[2025-06-04 09:12:59] 2025-06-04 13:12:41,313 | INFO     | ready for new job
[2025-06-04 09:12:59] 2025-06-04 13:12:41,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 09:12:59] 2025-06-04 13:12:41,316 | INFO     | **************************************
[2025-06-04 09:12:59] 2025-06-04 13:12:41,316 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 09:12:59] 2025-06-04 13:12:41,316 | INFO     | **************************************
[2025-06-04 09:12:59] 2025-06-04 13:12:41,316 | INFO     | 
[2025-06-04 09:12:59] 2025-06-04 13:12:41,330 | INFO     | architecture information:
[2025-06-04 09:12:59] 2025-06-04 13:12:41,330 | INFO     | executing command: cat /etc/os-release
[2025-06-04 09:12:59] 2025-06-04 13:12:41,345 | INFO     | cat /etc/os-release:
[2025-06-04 09:12:59] NAME="CentOS Linux"
[2025-06-04 09:12:59] VERSION="7 (Core)"
[2025-06-04 09:12:59] ID="centos"
[2025-06-04 09:12:59] ID_LIKE="rhel fedora"
[2025-06-04 09:12:59] VERSION_ID="7"
[2025-06-04 09:12:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 09:12:59] ANSI_COLOR="0;31"
[2025-06-04 09:12:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 09:12:59] HOME_URL="https://www.centos.org/"
[2025-06-04 09:12:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 09:12:59] 
[2025-06-04 09:12:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 09:12:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 09:12:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 09:12:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 09:12:59] 
[2025-06-04 09:12:59] 2025-06-04 13:12:41,345 | INFO     | **************************************
[2025-06-04 09:12:59] 2025-06-04 13:12:41,848 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 09:12:59] 2025-06-04 13:12:41,864 | INFO     | sufficient remaining disk space (76520882176 B)
[2025-06-04 09:12:59] 2025-06-04 13:12:41,865 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 09:12:59] 2025-06-04 13:12:41,865 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 09:12:59] 2025-06-04 13:12:41,865 | INFO     | update_server=False
[2025-06-04 09:12:59] 2025-06-04 13:12:41,865 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 09:12:59] 2025-06-04 13:12:41,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 09:12:59] 2025-06-04 13:12:42,101 | INFO     | all payload control threads have been joined
[2025-06-04 09:12:59] 2025-06-04 13:12:42,171 | INFO     | all data control threads have been joined
[2025-06-04 09:12:59] 2025-06-04 13:12:42,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 09:12:59] 2025-06-04 13:12:42,651 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 09:12:59] 2025-06-04 13:12:42,651 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 09:12:59] 2025-06-04 13:12:42,651 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 09:12:59] 2025-06-04 13:12:42,670 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:12:59] 2025-06-04 13:12:42,670 | INFO     | aborting loop
[2025-06-04 09:12:59] 2025-06-04 13:12:42,759 | INFO     | all job control threads have been joined
[2025-06-04 09:12:59] 2025-06-04 13:12:42,870 | INFO     | [job] retrieve thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:42,918 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:42,955 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,072 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,106 | INFO     | [payload] control thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,176 | INFO     | [data] control thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,337 | INFO     | [payload] failed_post thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,448 | INFO     | [job] validate thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,675 | INFO     | [job] job monitor thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:43,764 | INFO     | [job] control thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:44,058 | INFO     | [payload] validate_post thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:44,205 | INFO     | [data] copytool_in thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:44,549 | INFO     | [data] copytool_out thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:44,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 09:12:59] 2025-06-04 13:12:45,770 | INFO     | [job] queue monitor thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:45,871 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:52,340 | INFO     | job.realtimelogging is not enabled
[2025-06-04 09:12:59] 2025-06-04 13:12:53,345 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 09:12:59] 2025-06-04 13:12:53,622 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140325069518656)>', '<ExcThread(monitor, started 140324206790400)>']
[2025-06-04 09:12:59] 2025-06-04 13:12:53,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 09:12:59] 2025-06-04 13:12:53,702 | INFO     | [monitor] control thread has ended
[2025-06-04 09:12:59] 2025-06-04 13:12:58,647 | INFO     | all workflow threads have been joined
[2025-06-04 09:12:59] 2025-06-04 13:12:58,647 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 09:12:59] 2025-06-04 13:12:58,648 | INFO     | traces error code: 0
[2025-06-04 09:12:59] 2025-06-04 13:12:58,648 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 09:12:59] 2025-06-04 13:12:58,836 [wrapper] ==== pilot stdout END ====
[2025-06-04 09:12:59] 2025-06-04 13:12:58,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 09:12:59] 2025-06-04 13:12:58,842 [wrapper] pilotpid: 1322415
[2025-06-04 09:12:59] 2025-06-04 13:12:58,844 [wrapper] Pilot exit status: 0
[2025-06-04 09:12:59] 2025-06-04 13:12:58,854 [wrapper] pandaids: 6678390244
[2025-06-04 09:12:59] 2025-06-04 13:12:58,923 [wrapper] cleanup supervisor_pilot 1813313 1322416
[2025-06-04 09:12:59] 2025-06-04 13:12:58,926 [wrapper] Test setup, not cleaning
[2025-06-04 09:12:59] 2025-06-04 13:12:58,929 [wrapper] apfmon messages muted
[2025-06-04 09:12:59] 2025-06-04 13:12:58,932 [wrapper] ==== wrapper stdout END ====
[2025-06-04 09:12:59] 2025-06-04 13:12:58,935 [wrapper] ==== wrapper stderr END ====
[2025-06-04 09:12:59]  *** Error codes and diagnostics ***
[2025-06-04 09:12:59]     "exeErrorCode": 0,
[2025-06-04 09:12:59]     "exeErrorDiag": "",
[2025-06-04 09:12:59]     "pilotErrorCode": 0,
[2025-06-04 09:12:59]     "pilotErrorDiag": "",
[2025-06-04 09:12:59]  *** Listing of results directory ***
[2025-06-04 09:12:59] total 390856
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:56 queuedata.json
[2025-06-04 09:12:59] -rwx------. 1 boincer umatlas     37140 Jun  4 02:56 runpilot2-wrapper.sh
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 09:12:59] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:49 run_atlas
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:49 job.xml
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 07:49 EVNT.45006593._002188.pool.root.1
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:49 start_atlas.sh
[2025-06-04 09:12:59] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:49 shared
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 07:49 input.tar.gz
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:49 boinc_lockfile
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 07:49 pandaJob.out
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas    986812 Jun  4 07:49 agis_schedconf.cvmfs.json
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas   1598969 Jun  4 07:49 agis_ddmendpoints.agis.ALL.json
[2025-06-04 09:12:59] drwx------. 4 boincer umatlas      4096 Jun  4 07:49 pilot3
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas      6671 Jun  4 09:09 init_data.xml
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas 181315959 Jun  4 09:11 HITS.45006595._054695.pool.root.1
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas       529 Jun  4 09:12 boinc_task_state.xml
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas        95 Jun  4 09:12 pilot_heartbeat.json
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas      1040 Jun  4 09:12 memory_monitor_summary.json
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas    352110 Jun  4 09:12 log.45006595._054695.job.log.tgz.1
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas      7712 Jun  4 09:12 heartbeat.json
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas      4425 Jun  4 09:12 pilotlog.txt
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 09:12 boinc_mmap_file
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas        27 Jun  4 09:12 wrapper_checkpoint.txt
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas    481615 Jun  4 09:12 log.45006595._054695.job.log.1
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas       357 Jun  4 09:12 output.list
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas       620 Jun  4 09:12 runtime_log
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas    849920 Jun  4 09:12 result.tar.gz
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas       649 Jun  4 09:12 Vx6KDmgExg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1anKDm2Fag5n.diag
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas      8646 Jun  4 09:12 runtime_log.err
[2025-06-04 09:12:59] -rw-r--r--. 1 boincer umatlas     21484 Jun  4 09:12 stderr.txt
[2025-06-04 09:12:59] HITS file was successfully produced:
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas 181315959 Jun  4 09:11 shared/HITS.pool.root.1
[2025-06-04 09:12:59]  *** Contents of shared directory: ***
[2025-06-04 09:12:59] total 386848
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 07:49 ATLAS.root_0
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:49 start_atlas.sh
[2025-06-04 09:12:59] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 07:49 input.tar.gz
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas 181315959 Jun  4 09:11 HITS.pool.root.1
[2025-06-04 09:12:59] -rw-------. 1 boincer umatlas    849920 Jun  4 09:12 result.tar.gz
09:13:00 (1318829): run_atlas exited; CPU time 41446.858914
09:13:00 (1318829): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN