Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:30 (11983): wrapper (7.7.26015): starting
20:57:30 (11983): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 20:57:30] Arguments: --nthreads 8
[2025-06-04 20:57:30] Threads: 8
[2025-06-04 20:57:30] Checking for CVMFS
[2025-06-04 20:57:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 20:57:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 20:57:31] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 20:57:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 20:57:31] 2.11.2.0 17879 33619 90636 146791 1 202 19074207 25165824 2641 130560 0 18118501 99.845 18583114 2055 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 20:57:31] CVMFS is ok
[2025-06-04 20:57:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 20:57:31] Checking for apptainer binary...
[2025-06-04 20:57:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 20:57:31] Running /usr/bin/apptainer --version
[2025-06-04 20:57:31] apptainer version 1.3.2-1.el7
[2025-06-04 20:57:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 20:57:33] cg-vwn476.simple-grid.lan
[2025-06-04 20:57:33] apptainer works
[2025-06-04 20:57:33] Set ATHENA_PROC_NUMBER=8
[2025-06-04 20:57:33] Set ATHENA_CORE_NUMBER=8
[2025-06-04 20:57:33] Starting ATLAS job with PandaID=6678390188
[2025-06-04 20:57:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:20:42]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:20:42] 2025-06-04 22:23:09,152 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 04:20:42] 2025-06-04 22:23:09,152 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 04:20:42] 2025-06-04 22:23:09,152 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 04:20:42] 2025-06-04 22:23:09,152 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 04:20:42] 2025-06-04 22:23:09,157 | INFO     | fitting pss+swap vs Time
[2025-06-05 04:20:42] 2025-06-04 22:23:09,157 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,159 | INFO     | sum of deviations: 10015624586.999998
[2025-06-05 04:20:42] 2025-06-04 22:23:09,159 | INFO     | mean x: 1749069590.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,159 | INFO     | mean y: 2468578.8190954775
[2025-06-05 04:20:42] 2025-06-04 22:23:09,159 | INFO     | -- intersect: -7166529109.686958
[2025-06-05 04:20:42] 2025-06-04 22:23:09,159 | INFO     | intersect: -7166529109.686958
[2025-06-05 04:20:42] 2025-06-04 22:23:09,160 | INFO     | chi2: 2.3670866653832263
[2025-06-05 04:20:42] 2025-06-04 22:23:09,160 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,161 | INFO     | sum of deviations: 23134770208.000004
[2025-06-05 04:20:42] 2025-06-04 22:23:09,162 | INFO     | mean x: 1749069437.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,162 | INFO     | mean y: 2479483.567010309
[2025-06-05 04:20:42] 2025-06-04 22:23:09,162 | INFO     | -- intersect: -17870632112.349697
[2025-06-05 04:20:42] 2025-06-04 22:23:09,162 | INFO     | intersect: -17870632112.349697
[2025-06-05 04:20:42] 2025-06-04 22:23:09,168 | INFO     | chi2: 1.543559311904756
[2025-06-05 04:20:42] 2025-06-04 22:23:09,169 | INFO     | current chi2=1.543559311904756 (change=34.79075631331576 %)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,169 | INFO     | sum of square deviations: 2093397390.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,170 | INFO     | sum of deviations: 22467222258.999996
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | mean x: 1749069285.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | mean y: 2478886.687830688
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | -- intersect: -18769269162.776016
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | intersect: -18769269162.776016
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | chi2: 1.5447592728506025
[2025-06-05 04:20:42] 2025-06-04 22:23:09,171 | INFO     | current chi2=1.5447592728506025 (change=-0.07773986633308366 %)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,172 | INFO     | right removable region: 188
[2025-06-05 04:20:42] 2025-06-04 22:23:09,172 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,173 | INFO     | sum of deviations: -19807573611.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | mean x: 1749069742.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | mean y: 2493608.324742268
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | -- intersect: 15305132543.300076
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | intersect: 15305132543.300076
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | chi2: 0.9324081730206537
[2025-06-05 04:20:42] 2025-06-04 22:23:09,174 | INFO     | current chi2=0.9324081730206537 (change=60.60946197465488 %)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,175 | INFO     | sum of square deviations: 2093397390.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,176 | INFO     | sum of deviations: -15232418213.999998
[2025-06-05 04:20:42] 2025-06-04 22:23:09,176 | INFO     | mean x: 1749069895.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,176 | INFO     | mean y: 2489482.1481481483
[2025-06-05 04:20:42] 2025-06-04 22:23:09,176 | INFO     | -- intersect: 12729439584.133831
[2025-06-05 04:20:42] 2025-06-04 22:23:09,177 | INFO     | intersect: 12729439584.133831
[2025-06-05 04:20:42] 2025-06-04 22:23:09,177 | INFO     | chi2: 0.9087361317409715
[2025-06-05 04:20:42] 2025-06-04 22:23:09,177 | INFO     | current chi2=0.9087361317409715 (change=2.538806711978263 %)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,177 | INFO     | left removable region: 20
[2025-06-05 04:20:42] 2025-06-04 22:23:09,177 | INFO     | sum of square deviations: 1470248962.0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,178 | INFO     | sum of deviations: 4770339018.999999
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | mean x: 1749069864.5
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | mean y: 2494119.011904762
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | -- intersect: -5672501366.263868
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | intersect: -5672501366.263868
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | chi2: 0.0005792807121989604
[2025-06-05 04:20:42] 2025-06-04 22:23:09,179 | INFO     | -- intersect: -5672501366.263868
[2025-06-05 04:20:42] 2025-06-04 22:23:09,180 | INFO     | current memory leak: 3.24 B/s (using 168 data points, chi2=0.00)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,180 | INFO     | ..............................
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . Timing measurements:
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . get job = 0 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . initial setup = 2 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . payload setup = 27 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . stage-in = 0 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . payload execution = 12165 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . stage-out = 5 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | . log creation = 1 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,181 | INFO     | ..............................
[2025-06-05 04:20:42] 2025-06-04 22:23:09,315 | INFO     | 
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | job summary report
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | --------------------------------------------------
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | PanDA job id: 6678390188
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | task id: 45006595
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | errors: (none)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | pilot state: finished 
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | transexitcode: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | exeerrorcode: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | exeerrordiag: 
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | exitcode: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | exitmsg: OK
[2025-06-05 04:20:42] 2025-06-04 22:23:09,316 | INFO     | cpuconsumptiontime: 45770 s
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | nevents: 400
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | neventsw: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | pid: 27489
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | pgrp: 27489
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | corecount: 8
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | event service: False
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | sizes: {0: 2397171, 1: 2397370, 9: 2397576, 12: 2397604, 12197: 2426663, 12203: 2435604, 12204: 2435788, 12296: 2435958}
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | --------------------------------------------------
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | 
[2025-06-05 04:20:42] 2025-06-04 22:23:09,317 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | job 6678390188 has completed (purged errors)
[2025-06-05 04:20:42] 2025-06-04 22:23:09,741 | INFO     | overall cleanup function is called
[2025-06-05 04:20:42] 2025-06-04 22:23:10,755 | INFO     | --- collectZombieJob: --- 10, [27489]
[2025-06-05 04:20:42] 2025-06-04 22:23:10,755 | INFO     | zombie collector waiting for pid 27489
[2025-06-05 04:20:42] 2025-06-04 22:23:10,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:20:42] 2025-06-04 22:23:10,756 | INFO     | collected zombie processes
[2025-06-05 04:20:42] 2025-06-04 22:23:10,756 | INFO     | will attempt to kill all subprocesses of pid=27489
[2025-06-05 04:20:42] 2025-06-04 22:23:10,858 | INFO     | process IDs to be killed: [27489] (in reverse order)
[2025-06-05 04:20:42] 2025-06-04 22:23:11,275 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:20:42] 2025-06-04 22:23:11,275 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:20:42] 2025-06-04 22:23:11,279 | INFO     | did not find any defunct processes belonging to 27489
[2025-06-05 04:20:42] 2025-06-04 22:23:11,282 | INFO     | did not find any defunct processes belonging to 27489
[2025-06-05 04:20:42] 2025-06-04 22:23:11,282 | INFO     | ready for new job
[2025-06-05 04:20:42] 2025-06-04 22:23:11,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:20:42] 2025-06-04 22:23:11,285 | INFO     | **************************************
[2025-06-05 04:20:42] 2025-06-04 22:23:11,285 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:20:42] 2025-06-04 22:23:11,285 | INFO     | **************************************
[2025-06-05 04:20:42] 2025-06-04 22:23:11,285 | INFO     | 
[2025-06-05 04:20:42] 2025-06-04 22:23:11,286 | INFO     | pilot is running in a VM
[2025-06-05 04:20:42] 2025-06-04 22:23:11,286 | INFO     | architecture information:
[2025-06-05 04:20:42] 2025-06-04 22:23:11,302 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:20:42] 2025-06-04 22:23:11,545 | INFO     | cat /etc/os-release:
[2025-06-05 04:20:42] NAME="CentOS Linux"
[2025-06-05 04:20:42] VERSION="7 (Core)"
[2025-06-05 04:20:42] ID="centos"
[2025-06-05 04:20:42] ID_LIKE="rhel fedora"
[2025-06-05 04:20:42] VERSION_ID="7"
[2025-06-05 04:20:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:20:42] ANSI_COLOR="0;31"
[2025-06-05 04:20:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:20:42] HOME_URL="https://www.centos.org/"
[2025-06-05 04:20:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:20:42] 
[2025-06-05 04:20:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:20:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:20:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:20:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:20:42] 
[2025-06-05 04:20:42] 2025-06-04 22:23:11,545 | INFO     | **************************************
[2025-06-05 04:20:42] 2025-06-04 22:23:12,049 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 04:20:42] 2025-06-04 22:23:12,234 | INFO     | sufficient remaining disk space (497606983680 B)
[2025-06-05 04:20:42] 2025-06-04 22:23:12,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:20:42] 2025-06-04 22:23:12,234 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:20:42] 2025-06-04 22:23:12,234 | INFO     | update_server=False
[2025-06-05 04:20:42] 2025-06-04 22:23:12,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:20:42] 2025-06-04 22:23:12,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:20:42] 2025-06-04 22:23:12,236 | INFO     | aborting loop
[2025-06-05 04:20:42] 2025-06-04 22:23:12,236 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:20:42] 2025-06-04 22:23:12,457 | INFO     | all data control threads have been joined
[2025-06-05 04:20:42] 2025-06-04 22:23:12,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:20:42] 2025-06-04 22:23:12,759 | INFO     | PID=15632 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-05 04:20:42] 2025-06-04 22:23:12,759 | INFO     | .. there are 9 such processes running
[2025-06-05 04:20:42] 2025-06-04 22:23:12,760 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:20:42] 2025-06-04 22:23:12,760 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:20:42] 2025-06-04 22:23:12,760 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:20:42] 2025-06-04 22:23:12,777 | INFO     | all job control threads have been joined
[2025-06-05 04:20:42] 2025-06-04 22:23:13,240 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,241 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,463 | INFO     | [data] control thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,494 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,498 | INFO     | all payload control threads have been joined
[2025-06-05 04:20:42] 2025-06-04 22:23:13,529 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,541 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,597 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:13,783 | INFO     | [job] control thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,049 | INFO     | [job] validate thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,192 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,243 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:20:42] 2025-06-04 22:23:14,504 | INFO     | [payload] control thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,510 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:14,578 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:15,336 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:16,765 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:20:42] 2025-06-04 22:23:17,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478993418048)>', '<ExcThread(monitor, started 140478045484800)>']
[2025-06-05 04:20:42] 2025-06-04 22:23:17,790 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:20:42] 2025-06-04 22:23:17,790 | INFO     | [monitor] control thread has ended
[2025-06-05 04:20:42] 2025-06-04 22:23:22,398 | INFO     | all workflow threads have been joined
[2025-06-05 04:20:42] 2025-06-04 22:23:22,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:20:42] 2025-06-04 22:23:22,399 | INFO     | traces error code: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:22,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:20:42] 2025-06-04 22:23:22,798 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:20:42] 2025-06-04 22:23:22,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:20:42] 2025-06-04 22:23:23,004 [wrapper] pilotpid: 15632
[2025-06-05 04:20:42] 2025-06-04 22:23:23,092 [wrapper] Pilot exit status: 0
[2025-06-05 04:20:42] 2025-06-04 22:23:23,572 [wrapper] pandaids: 6678390188
[2025-06-05 04:20:42] 2025-06-04 22:23:24,401 [wrapper] cleanup supervisor_pilot 18073 15633
[2025-06-05 04:20:42] 2025-06-04 22:23:24,516 [wrapper] Test setup, not cleaning
[2025-06-05 04:20:42] 2025-06-04 22:23:24,599 [wrapper] apfmon messages muted
[2025-06-05 04:20:42] 2025-06-04 22:23:24,670 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:20:42] 2025-06-04 22:23:24,742 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:20:42]  *** Error codes and diagnostics ***
[2025-06-05 04:20:42]     "exeErrorCode": 0,
[2025-06-05 04:20:42]     "exeErrorDiag": "",
[2025-06-05 04:20:42]     "pilotErrorCode": 0,
[2025-06-05 04:20:42]     "pilotErrorDiag": "",
[2025-06-05 04:20:42]  *** Listing of results directory ***
[2025-06-05 04:20:42] total 386380
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-05 04:20:42] -rwx------. 1 boinc boinc     37140 Jun  4 08:46 runpilot2-wrapper.sh
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc      5111 Jun  4 08:46 queuedata.json
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc       100 Jun  4 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:20:42] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 20:57 run_atlas
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc       105 Jun  4 20:57 job.xml
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc 214248470 Jun  4 20:57 EVNT.45006593._002186.pool.root.1
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc    508880 Jun  4 20:57 input.tar.gz
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc      6391 Jun  4 20:57 init_data.xml
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:57 start_atlas.sh
[2025-06-05 04:20:42] drwxrwx--x. 2 boinc boinc        68 Jun  4 20:57 shared
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc         0 Jun  4 20:57 boinc_lockfile
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc      2525 Jun  4 20:57 pandaJob.out
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc    990984 Jun  4 20:57 agis_schedconf.cvmfs.json
[2025-06-05 04:20:42] drwx------. 4 boinc boinc      4096 Jun  4 20:57 pilot3
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc 174676150 Jun  5 00:20 HITS.45006595._054639.pool.root.1
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc       531 Jun  5 00:20 boinc_task_state.xml
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc      1016 Jun  5 00:21 memory_monitor_summary.json
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc   1598969 Jun  5 00:21 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc    375911 Jun  5 00:21 log.45006595._054639.job.log.tgz.1
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc      7683 Jun  5 00:23 heartbeat.json
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc        95 Jun  5 00:23 pilot_heartbeat.json
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc      4808 Jun  5 00:23 pilotlog.txt
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc   1076689 Jun  5 00:23 log.45006595._054639.job.log.1
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc       357 Jun  5 00:23 output.list
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc       620 Jun  5 00:23 runtime_log
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc   1474560 Jun  5 00:23 result.tar.gz
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc       656 Jun  5 00:23 xlOMDm63wg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmwtaKDm9XRIRm.diag
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc      8659 Jun  5 00:23 runtime_log.err
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:20 boinc_mmap_file
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc        28 Jun  5 04:20 wrapper_checkpoint.txt
[2025-06-05 04:20:42] -rw-r--r--. 1 boinc boinc     20560 Jun  5 04:20 stderr.txt
[2025-06-05 04:20:42] HITS file was successfully produced:
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc 174676150 Jun  5 00:20 shared/HITS.pool.root.1
[2025-06-05 04:20:42]  *** Contents of shared directory: ***
[2025-06-05 04:20:42] total 381768
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc 214248470 Jun  4 20:57 ATLAS.root_0
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc    508880 Jun  4 20:57 input.tar.gz
[2025-06-05 04:20:42] -rw-r--r--. 2 boinc boinc     15093 Jun  4 20:57 start_atlas.sh
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc 174676150 Jun  5 00:20 HITS.pool.root.1
[2025-06-05 04:20:42] -rw-------. 1 boinc boinc   1474560 Jun  5 00:23 result.tar.gz
04:20:44 (11983): run_atlas exited; CPU time 45914.773299
04:20:44 (11983): called boinc_finish(0)

</stderr_txt>
]]>

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