Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:41:37 (2677064): wrapper (7.7.26015): starting
07:41:37 (2677064): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:41:37] Arguments: --nthreads 8
[2025-06-04 07:41:37] Threads: 8
[2025-06-04 07:41:37] Checking for CVMFS
[2025-06-04 07:41:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:41:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:41:37] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:41:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:41:38] 2.12.6.0 8406 37266 427620 146779 3 309 26457301 32935936 10557 16776704 1 319848414 99.648 287097957 22733 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:41:38] CVMFS is ok
[2025-06-04 07:41:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:41:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:41:38] Further information can be found at the LHC@home message board.
[2025-06-04 07:41:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:41:38] Checking for apptainer binary...
[2025-06-04 07:41:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:41:38] Running /usr/bin/apptainer --version
[2025-06-04 07:41:38] apptainer version 1.4.1-1.el9
[2025-06-04 07:41:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:41:38] c7-16-9.aglt2.org
[2025-06-04 07:41:38] apptainer works
[2025-06-04 07:41:38] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:41:38] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:41:38] Starting ATLAS job with PandaID=6678390236
[2025-06-04 07:41:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:36:14]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:36:14]  is_altstaged=None
[2025-06-04 08:36:14]  is_tar=False
[2025-06-04 08:36:14]  lfn=log.45006595._054687.job.log.tgz.1
[2025-06-04 08:36:14]  mtime=0
[2025-06-04 08:36:14]  protocol_id=None
[2025-06-04 08:36:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:36:14]  replicas=None
[2025-06-04 08:36:14]  scope=mc23_13p6TeV
[2025-06-04 08:36:14]  status=None
[2025-06-04 08:36:14]  status_code=0
[2025-06-04 08:36:14]  storage_token=
[2025-06-04 08:36:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678390236/log.45006595._054687.job.log.tgz.1
[2025-06-04 08:36:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/25/log.45006595._054687.job.log.tgz.1
[2025-06-04 08:36:14]  workdir=None
[2025-06-04 08:36:14] ]
[2025-06-04 08:36:14] 2025-06-04 12:35:47,892 | INFO     | transferring file log.45006595._054687.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678390236/log.45006595._054687.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:36:14] 2025-06-04 12:35:47,892 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678390236/log.45006595._054687.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054687.job
[2025-06-04 08:36:14] 2025-06-04 12:35:47,907 | INFO     | adding to output.list: log.45006595._054687.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/25/log.45006595._054687.job.log.tg
[2025-06-04 08:36:14] 2025-06-04 12:35:47,908 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:36:14] 2025-06-04 12:35:47,908 | INFO     | summary of transferred files:
[2025-06-04 08:36:14] 2025-06-04 12:35:47,908 | INFO     |  -- lfn=log.45006595._054687.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:36:14] 2025-06-04 12:35:47,908 | INFO     | stage-out finished correctly
[2025-06-04 08:36:14] 2025-06-04 12:35:49,814 | WARNING  | process 2689250 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 08:36:14] 2025-06-04 12:35:49,814 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678390236/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:36:14] 2025-06-04 12:35:49,835 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:36:14] 2025-06-04 12:35:50,226 | INFO     | number of running child processes to parent process 2689250: 1
[2025-06-04 08:36:14] 2025-06-04 12:35:50,226 | INFO     | maximum number of monitored processes: 6
[2025-06-04 08:36:14] 2025-06-04 12:35:51,672 | INFO     | job 6678390236 has state=finished
[2025-06-04 08:36:14] 2025-06-04 12:35:51,672 | INFO     | preparing for final server update for job 6678390236 in state='finished'
[2025-06-04 08:36:14] 2025-06-04 12:35:51,673 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:36:14] 2025-06-04 12:35:51,673 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:36:14] 2025-06-04 12:35:51,673 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:36:14] 2025-06-04 12:35:51,673 | INFO     | job 6678390236 has finished - writing final server update
[2025-06-04 08:36:14] 2025-06-04 12:35:51,673 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:36:14] 2025-06-04 12:35:51,692 | INFO     | executing command: lscpu
[2025-06-04 08:36:14] 2025-06-04 12:35:51,781 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:36:14] 2025-06-04 12:35:52,730 | INFO     | monitor loop #241: job 0:6678390236 is in state 'finished'
[2025-06-04 08:36:14] 2025-06-04 12:35:52,730 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:36:14] 2025-06-04 12:35:53,232 | INFO     | PID=2682576 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-06-04 08:36:14] 2025-06-04 12:35:53,232 | INFO     | .. there are 15 such processes running
[2025-06-04 08:36:14] 2025-06-04 12:35:54,942 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 08:36:14] 2025-06-04 12:35:54,943 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678390236/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:36:14] 2025-06-04 12:35:54,943 | INFO     | extracted standard info from prmon json
[2025-06-04 08:36:14] 2025-06-04 12:35:54,944 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:36:14] 2025-06-04 12:35:54,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:36:14] 2025-06-04 12:35:54,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:36:14] 2025-06-04 12:35:54,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:36:14] 2025-06-04 12:35:54,945 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | sum of square deviations: 30168007.5
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | sum of deviations: 401951051.49999994
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | mean x: 1749039005.5
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | mean y: 2245145.847826087
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | -- intersect: -23301516873.411785
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | intersect: -23301516873.411785
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | chi2: 0.6595171806505321
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | -- intersect: -23301516873.411785
[2025-06-04 08:36:14] 2025-06-04 12:35:54,946 | INFO     | current memory leak: 13.32 B/s (using 46 data points, chi2=0.66)
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | ..............................
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . Timing measurements:
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . get job = 0 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . initial setup = 2 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . payload setup = 4 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . stage-in = 0 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . payload execution = 3218 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,947 | INFO     | . stage-out = 0 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,948 | INFO     | . log creation = 0 s
[2025-06-04 08:36:14] 2025-06-04 12:35:54,948 | INFO     | ..............................
[2025-06-04 08:36:14] 2025-06-04 12:35:55,110 | INFO     | 
[2025-06-04 08:36:14] 2025-06-04 12:35:55,110 | INFO     | job summary report
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | --------------------------------------------------
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | PanDA job id: 6678390236
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | task id: 45006595
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | errors: (none)
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:36:14] 2025-06-04 12:35:55,111 | INFO     | pilot state: finished 
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | transexitcode: 0
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | exeerrorcode: 0
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | exeerrordiag: 
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | exitcode: 0
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | exitmsg: OK
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | cpuconsumptiontime: 21100 s
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | nevents: 400
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | neventsw: 0
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | pid: 2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | pgrp: 2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | corecount: 8
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | event service: False
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | sizes: {0: 2397341, 3: 2397547, 11: 2397575, 3227: 2422969, 3228: 2431910, 3230: 2431966, 3235: 2432264}
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | --------------------------------------------------
[2025-06-04 08:36:14] 2025-06-04 12:35:55,112 | INFO     | 
[2025-06-04 08:36:14] 2025-06-04 12:35:55,113 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:36:14] 2025-06-04 12:35:55,136 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,136 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,137 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | job 6678390236 has completed (purged errors)
[2025-06-04 08:36:14] 2025-06-04 12:35:55,138 | INFO     | overall cleanup function is called
[2025-06-04 08:36:14] 2025-06-04 12:35:56,146 | INFO     | --- collectZombieJob: --- 10, [2689250]
[2025-06-04 08:36:14] 2025-06-04 12:35:56,147 | INFO     | zombie collector waiting for pid 2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:56,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:36:14] 2025-06-04 12:35:56,147 | INFO     | collected zombie processes
[2025-06-04 08:36:14] 2025-06-04 12:35:56,147 | INFO     | will attempt to kill all subprocesses of pid=2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:56,517 | INFO     | process IDs to be killed: [2689250] (in reverse order)
[2025-06-04 08:36:14] 2025-06-04 12:35:56,648 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:36:14] 2025-06-04 12:35:56,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:36:14] 2025-06-04 12:35:56,666 | INFO     | did not find any defunct processes belonging to 2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:56,681 | INFO     | did not find any defunct processes belonging to 2689250
[2025-06-04 08:36:14] 2025-06-04 12:35:56,681 | INFO     | ready for new job
[2025-06-04 08:36:14] 2025-06-04 12:35:56,681 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:36:14] 2025-06-04 12:35:56,683 | INFO     | **************************************
[2025-06-04 08:36:14] 2025-06-04 12:35:56,684 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:36:14] 2025-06-04 12:35:56,684 | INFO     | **************************************
[2025-06-04 08:36:14] 2025-06-04 12:35:56,684 | INFO     | 
[2025-06-04 08:36:14] 2025-06-04 12:35:56,700 | INFO     | architecture information:
[2025-06-04 08:36:14] 2025-06-04 12:35:56,700 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:36:14] 2025-06-04 12:35:56,711 | INFO     | cat /etc/os-release:
[2025-06-04 08:36:14] NAME="CentOS Linux"
[2025-06-04 08:36:14] VERSION="7 (Core)"
[2025-06-04 08:36:14] ID="centos"
[2025-06-04 08:36:14] ID_LIKE="rhel fedora"
[2025-06-04 08:36:14] VERSION_ID="7"
[2025-06-04 08:36:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:36:14] ANSI_COLOR="0;31"
[2025-06-04 08:36:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:36:14] HOME_URL="https://www.centos.org/"
[2025-06-04 08:36:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:36:14] 
[2025-06-04 08:36:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:36:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:36:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:36:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:36:14] 
[2025-06-04 08:36:14] 2025-06-04 12:35:56,712 | INFO     | **************************************
[2025-06-04 08:36:14] 2025-06-04 12:35:57,214 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:36:14] 2025-06-04 12:35:57,233 | INFO     | sufficient remaining disk space (75587649536 B)
[2025-06-04 08:36:14] 2025-06-04 12:35:57,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:36:14] 2025-06-04 12:35:57,234 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:36:14] 2025-06-04 12:35:57,234 | INFO     | update_server=False
[2025-06-04 08:36:14] 2025-06-04 12:35:57,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:36:14] 2025-06-04 12:35:57,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:36:14] 2025-06-04 12:35:57,235 | INFO     | aborting loop
[2025-06-04 08:36:14] 2025-06-04 12:35:57,243 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:36:14] 2025-06-04 12:35:57,244 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:36:14] 2025-06-04 12:35:57,244 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:36:14] 2025-06-04 12:35:57,436 | INFO     | all payload control threads have been joined
[2025-06-04 08:36:14] 2025-06-04 12:35:57,528 | INFO     | all data control threads have been joined
[2025-06-04 08:36:14] 2025-06-04 12:35:58,240 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,241 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,284 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,311 | INFO     | all job control threads have been joined
[2025-06-04 08:36:14] 2025-06-04 12:35:58,388 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,432 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,441 | INFO     | [payload] control thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:58,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:36:14] 2025-06-04 12:35:58,533 | INFO     | [data] control thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:59,159 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:59,179 | INFO     | [job] validate thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:59,316 | INFO     | [job] control thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:59,460 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:35:59,482 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:36:00,039 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:36:14] 2025-06-04 12:36:00,421 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:36:14] 2025-06-04 12:36:00,483 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:36:01,044 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:36:04,427 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:36:07,801 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:36:14] 2025-06-04 12:36:08,802 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:36:14] 2025-06-04 12:36:09,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622083704640)>', '<ExcThread(monitor, started 139621568591616)>']
[2025-06-04 08:36:14] 2025-06-04 12:36:09,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:36:14] 2025-06-04 12:36:09,305 | INFO     | [monitor] control thread has ended
[2025-06-04 08:36:14] 2025-06-04 12:36:14,258 | INFO     | all workflow threads have been joined
[2025-06-04 08:36:14] 2025-06-04 12:36:14,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:36:14] 2025-06-04 12:36:14,258 | INFO     | traces error code: 0
[2025-06-04 08:36:14] 2025-06-04 12:36:14,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:36:14] 2025-06-04 12:36:14,366 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:36:14] 2025-06-04 12:36:14,369 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:36:14] 2025-06-04 12:36:14,372 [wrapper] pilotpid: 2682576
[2025-06-04 08:36:14] 2025-06-04 12:36:14,375 [wrapper] Pilot exit status: 0
[2025-06-04 08:36:14] 2025-06-04 12:36:14,387 [wrapper] pandaids: 6678390236
[2025-06-04 08:36:14] 2025-06-04 12:36:14,473 [wrapper] cleanup supervisor_pilot 2818946 2682577
[2025-06-04 08:36:14] 2025-06-04 12:36:14,476 [wrapper] Test setup, not cleaning
[2025-06-04 08:36:14] 2025-06-04 12:36:14,478 [wrapper] apfmon messages muted
[2025-06-04 08:36:14] 2025-06-04 12:36:14,481 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:36:14] 2025-06-04 12:36:14,483 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:36:14]  *** Error codes and diagnostics ***
[2025-06-04 08:36:14]     "exeErrorCode": 0,
[2025-06-04 08:36:14]     "exeErrorDiag": "",
[2025-06-04 08:36:14]     "pilotErrorCode": 0,
[2025-06-04 08:36:14]     "pilotErrorDiag": "",
[2025-06-04 08:36:14]  *** Listing of results directory ***
[2025-06-04 08:36:14] total 381924
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 08:36:14] -rwx------. 1 boincer umatlas     37140 Jun  4 02:56 runpilot2-wrapper.sh
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:56 queuedata.json
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:36:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:41 run_atlas
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:41 job.xml
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 07:41 EVNT.45006593._002188.pool.root.1
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 07:41 input.tar.gz
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:41 start_atlas.sh
[2025-06-04 08:36:14] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:41 shared
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:41 boinc_lockfile
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 07:41 pandaJob.out
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas    986812 Jun  4 07:41 agis_schedconf.cvmfs.json
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas   1598969 Jun  4 07:41 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:36:14] drwx------. 4 boincer umatlas      4096 Jun  4 07:41 pilot3
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas      6933 Jun  4 08:29 init_data.xml
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas        95 Jun  4 08:34 pilot_heartbeat.json
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas 172575366 Jun  4 08:35 HITS.45006595._054687.pool.root.1
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas       529 Jun  4 08:35 boinc_task_state.xml
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas      1023 Jun  4 08:35 memory_monitor_summary.json
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas    290772 Jun  4 08:35 log.45006595._054687.job.log.tgz.1
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas      7690 Jun  4 08:35 heartbeat.json
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:36 boinc_mmap_file
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas        27 Jun  4 08:36 wrapper_checkpoint.txt
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas      4425 Jun  4 08:36 pilotlog.txt
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas    332213 Jun  4 08:36 log.45006595._054687.job.log.1
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas       357 Jun  4 08:36 output.list
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:36 runtime_log
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas    645120 Jun  4 08:36 result.tar.gz
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas       649 Jun  4 08:36 yPUKDm2Dxg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwanKDmhC4jMo.diag
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 08:36 runtime_log.err
[2025-06-04 08:36:14] -rw-r--r--. 1 boincer umatlas     21472 Jun  4 08:36 stderr.txt
[2025-06-04 08:36:14] HITS file was successfully produced:
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas 172575366 Jun  4 08:35 shared/HITS.pool.root.1
[2025-06-04 08:36:14]  *** Contents of shared directory: ***
[2025-06-04 08:36:14] total 378120
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas 213430907 Jun  4 07:41 ATLAS.root_0
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas    508875 Jun  4 07:41 input.tar.gz
[2025-06-04 08:36:14] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:41 start_atlas.sh
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas 172575366 Jun  4 08:35 HITS.pool.root.1
[2025-06-04 08:36:14] -rw-------. 1 boincer umatlas    645120 Jun  4 08:36 result.tar.gz
08:36:15 (2677064): run_atlas exited; CPU time 21174.025024
08:36:15 (2677064): called boinc_finish(0)

</stderr_txt>
]]>

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