Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:44:18 (26022): wrapper (7.7.26015): starting
07:44:18 (26022): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 07:44:18] Arguments: --nthreads 12
[2025-06-04 07:44:18] Threads: 12
[2025-06-04 07:44:18] Checking for CVMFS
[2025-06-04 07:44:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:44:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:44:18] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:44:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:44:18] 2.11.2.0 2914 35638 85084 146779 3 56 18649790 20275201 1 130560 0 16048675 99.983 6257524 7649 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:44:18] CVMFS is ok
[2025-06-04 07:44:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:44:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:44:18] Further information can be found at the LHC@home message board.
[2025-06-04 07:44:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:44:18] Checking for apptainer binary...
[2025-06-04 07:44:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:44:18] Running /usr/bin/apptainer --version
[2025-06-04 07:44:18] apptainer version 1.3.2-1.el7
[2025-06-04 07:44:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:44:20] c-205-5.aglt2.org
[2025-06-04 07:44:20] apptainer works
[2025-06-04 07:44:20] Set ATHENA_PROC_NUMBER=12
[2025-06-04 07:44:20] Set ATHENA_CORE_NUMBER=12
[2025-06-04 07:44:20] Starting ATLAS job with PandaID=6678213730
[2025-06-04 07:44:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:47:17]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:47:17]  filetype=log
[2025-06-04 08:47:17]  guid=8b9d8b4d-5f38-4efa-8027-b95f4c8e18a9
[2025-06-04 08:47:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 08:47:17]  is_altstaged=None
[2025-06-04 08:47:17]  is_tar=False
[2025-06-04 08:47:17]  lfn=log.45006595._048570.job.log.tgz.1
[2025-06-04 08:47:17]  mtime=0
[2025-06-04 08:47:17]  protocol_id=None
[2025-06-04 08:47:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:47:17]  replicas=None
[2025-06-04 08:47:17]  scope=mc23_13p6TeV
[2025-06-04 08:47:17]  status=None
[2025-06-04 08:47:17]  status_code=0
[2025-06-04 08:47:17]  storage_token=
[2025-06-04 08:47:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678213730/log.45006595._048570.job.log.tgz.1
[2025-06-04 08:47:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/32/log.45006595._048570.job.log.tgz.1
[2025-06-04 08:47:17]  workdir=None
[2025-06-04 08:47:17] ]
[2025-06-04 08:47:17] 2025-06-04 12:46:53,381 | INFO     | transferring file log.45006595._048570.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678213730/log.45006595._048570.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:47:17] 2025-06-04 12:46:53,381 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678213730/log.45006595._048570.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._048570.job
[2025-06-04 08:47:17] 2025-06-04 12:46:53,411 | INFO     | adding to output.list: log.45006595._048570.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/32/log.45006595._048570.job.log.tg
[2025-06-04 08:47:17] 2025-06-04 12:46:53,412 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:47:17] 2025-06-04 12:46:53,412 | INFO     | summary of transferred files:
[2025-06-04 08:47:17] 2025-06-04 12:46:53,413 | INFO     |  -- lfn=log.45006595._048570.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:47:17] 2025-06-04 12:46:53,413 | INFO     | stage-out finished correctly
[2025-06-04 08:47:17] 2025-06-04 12:46:54,483 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:47:17] 2025-06-04 12:46:54,568 | INFO     | job 6678213730 has state=finished
[2025-06-04 08:47:17] 2025-06-04 12:46:54,568 | INFO     | preparing for final server update for job 6678213730 in state='finished'
[2025-06-04 08:47:17] 2025-06-04 12:46:54,569 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:47:17] 2025-06-04 12:46:54,569 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:47:17] 2025-06-04 12:46:54,569 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:47:17] 2025-06-04 12:46:54,570 | INFO     | job 6678213730 has finished - writing final server update
[2025-06-04 08:47:17] 2025-06-04 12:46:54,570 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:47:17] 2025-06-04 12:46:54,572 | INFO     | executing command: lscpu
[2025-06-04 08:47:17] 2025-06-04 12:46:54,600 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:47:17] 2025-06-04 12:46:54,769 | INFO     | monitor loop #284: job 0:6678213730 is in state 'finished'
[2025-06-04 08:47:17] 2025-06-04 12:46:54,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:47:17] 2025-06-04 12:46:57,272 | INFO     | monitor loop #285: job 0:6678213730 is in state 'finished'
[2025-06-04 08:47:17] 2025-06-04 12:46:57,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:47:17] 2025-06-04 12:46:57,687 | INFO     | PID=30342 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,219 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 08:47:17] 2025-06-04 12:46:59,219 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678213730/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:47:17] 2025-06-04 12:46:59,220 | INFO     | extracted standard info from prmon json
[2025-06-04 08:47:17] 2025-06-04 12:46:59,220 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:47:17] 2025-06-04 12:46:59,221 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:47:17] 2025-06-04 12:46:59,221 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:47:17] 2025-06-04 12:46:59,221 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:47:17] 2025-06-04 12:46:59,223 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:47:17] 2025-06-04 12:46:59,224 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 08:47:17] 2025-06-04 12:46:59,224 | INFO     | sum of deviations: -5719037920.000001
[2025-06-04 08:47:17] 2025-06-04 12:46:59,224 | INFO     | mean x: 1749039426.5
[2025-06-04 08:47:17] 2025-06-04 12:46:59,224 | INFO     | mean y: 2815996.3333333335
[2025-06-04 08:47:17] 2025-06-04 12:46:59,225 | INFO     | -- intersect: 204935785281.4744
[2025-06-04 08:47:17] 2025-06-04 12:46:59,225 | INFO     | intersect: 204935785281.4744
[2025-06-04 08:47:17] 2025-06-04 12:46:59,225 | INFO     | chi2: 0.04074655372750167
[2025-06-04 08:47:17] 2025-06-04 12:46:59,225 | INFO     | -- intersect: 204935785281.4744
[2025-06-04 08:47:17] 2025-06-04 12:46:59,225 | INFO     | current memory leak: -117.17 B/s (using 54 data points, chi2=0.04)
[2025-06-04 08:47:17] 2025-06-04 12:46:59,226 | INFO     | ..............................
[2025-06-04 08:47:17] 2025-06-04 12:46:59,226 | INFO     | . Timing measurements:
[2025-06-04 08:47:17] 2025-06-04 12:46:59,226 | INFO     | . get job = 0 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,226 | INFO     | . initial setup = 2 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | . payload setup = 9 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | . stage-in = 0 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | . payload execution = 3709 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | . stage-out = 0 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | . log creation = 0 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,227 | INFO     | ..............................
[2025-06-04 08:47:17] 2025-06-04 12:46:59,311 | INFO     | 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,312 | INFO     | job summary report
[2025-06-04 08:47:17] 2025-06-04 12:46:59,312 | INFO     | --------------------------------------------------
[2025-06-04 08:47:17] 2025-06-04 12:46:59,312 | INFO     | PanDA job id: 6678213730
[2025-06-04 08:47:17] 2025-06-04 12:46:59,312 | INFO     | task id: 45006595
[2025-06-04 08:47:17] 2025-06-04 12:46:59,312 | INFO     | errors: (none)
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | pilot state: finished 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | transexitcode: 0
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | exeerrorcode: 0
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | exeerrordiag: 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | exitcode: 0
[2025-06-04 08:47:17] 2025-06-04 12:46:59,313 | INFO     | exitmsg: OK
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | cpuconsumptiontime: 40122 s
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | nevents: 400
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | neventsw: 0
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | pid: 4639
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | pgrp: 4639
[2025-06-04 08:47:17] 2025-06-04 12:46:59,314 | INFO     | corecount: 12
[2025-06-04 08:47:17] 2025-06-04 12:46:59,315 | INFO     | event service: False
[2025-06-04 08:47:17] 2025-06-04 12:46:59,315 | INFO     | sizes: {0: 2397342, 5: 2397548, 11: 2397604, 3723: 2423198, 3724: 2432139, 3725: 2432195, 3729: 2432493}
[2025-06-04 08:47:17] 2025-06-04 12:46:59,315 | INFO     | --------------------------------------------------
[2025-06-04 08:47:17] 2025-06-04 12:46:59,315 | INFO     | 
[2025-06-04 08:47:17] 2025-06-04 12:46:59,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:47:17] 2025-06-04 12:46:59,341 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,341 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,341 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,341 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,342 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,342 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,342 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,342 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,342 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,343 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:47:17] 2025-06-04 12:46:59,344 | INFO     | job 6678213730 has completed (purged errors)
[2025-06-04 08:47:17] 2025-06-04 12:46:59,345 | INFO     | overall cleanup function is called
[2025-06-04 08:47:17] 2025-06-04 12:47:00,353 | INFO     | --- collectZombieJob: --- 10, [4639]
[2025-06-04 08:47:17] 2025-06-04 12:47:00,353 | INFO     | zombie collector waiting for pid 4639
[2025-06-04 08:47:17] 2025-06-04 12:47:00,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:47:17] 2025-06-04 12:47:00,353 | INFO     | collected zombie processes
[2025-06-04 08:47:17] 2025-06-04 12:47:00,354 | INFO     | will attempt to kill all subprocesses of pid=4639
[2025-06-04 08:47:17] 2025-06-04 12:47:00,444 | INFO     | process IDs to be killed: [4639] (in reverse order)
[2025-06-04 08:47:17] 2025-06-04 12:47:00,500 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:47:17] 2025-06-04 12:47:00,500 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:47:17] 2025-06-04 12:47:00,504 | INFO     | did not find any defunct processes belonging to 4639
[2025-06-04 08:47:17] 2025-06-04 12:47:00,507 | INFO     | did not find any defunct processes belonging to 4639
[2025-06-04 08:47:17] 2025-06-04 12:47:00,507 | INFO     | ready for new job
[2025-06-04 08:47:17] 2025-06-04 12:47:00,507 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:47:17] 2025-06-04 12:47:00,508 | INFO     | **************************************
[2025-06-04 08:47:17] 2025-06-04 12:47:00,509 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:47:17] 2025-06-04 12:47:00,509 | INFO     | **************************************
[2025-06-04 08:47:17] 2025-06-04 12:47:00,509 | INFO     | 
[2025-06-04 08:47:17] 2025-06-04 12:47:00,509 | INFO     | architecture information:
[2025-06-04 08:47:17] 2025-06-04 12:47:00,510 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:47:17] 2025-06-04 12:47:00,524 | INFO     | cat /etc/os-release:
[2025-06-04 08:47:17] NAME="CentOS Linux"
[2025-06-04 08:47:17] VERSION="7 (Core)"
[2025-06-04 08:47:17] ID="centos"
[2025-06-04 08:47:17] ID_LIKE="rhel fedora"
[2025-06-04 08:47:17] VERSION_ID="7"
[2025-06-04 08:47:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:47:17] ANSI_COLOR="0;31"
[2025-06-04 08:47:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:47:17] HOME_URL="https://www.centos.org/"
[2025-06-04 08:47:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:47:17] 
[2025-06-04 08:47:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:47:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:47:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:47:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:47:17] 
[2025-06-04 08:47:17] 2025-06-04 12:47:00,525 | INFO     | **************************************
[2025-06-04 08:47:17] 2025-06-04 12:47:01,028 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:47:17] 2025-06-04 12:47:01,044 | INFO     | sufficient remaining disk space (29421993984 B)
[2025-06-04 08:47:17] 2025-06-04 12:47:01,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:47:17] 2025-06-04 12:47:01,045 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:47:17] 2025-06-04 12:47:01,045 | INFO     | update_server=False
[2025-06-04 08:47:17] 2025-06-04 12:47:01,045 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:47:17] 2025-06-04 12:47:01,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:47:17] 2025-06-04 12:47:01,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:47:17] 2025-06-04 12:47:01,046 | INFO     | aborting loop
[2025-06-04 08:47:17] 2025-06-04 12:47:01,046 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:47:17] 2025-06-04 12:47:01,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:47:17] 2025-06-04 12:47:01,696 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:47:17] 2025-06-04 12:47:01,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:47:17] 2025-06-04 12:47:01,696 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:47:17] 2025-06-04 12:47:01,868 | INFO     | all data control threads have been joined
[2025-06-04 08:47:17] 2025-06-04 12:47:01,879 | INFO     | all payload control threads have been joined
[2025-06-04 08:47:17] 2025-06-04 12:47:02,051 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,052 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,052 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,160 | INFO     | all job control threads have been joined
[2025-06-04 08:47:17] 2025-06-04 12:47:02,540 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,701 | INFO     | [job] validate thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,718 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,798 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,874 | INFO     | [data] control thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:02,884 | INFO     | [payload] control thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:03,129 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:03,165 | INFO     | [job] control thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:03,281 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:03,445 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:03,516 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:05,052 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:11,061 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:47:17] 2025-06-04 12:47:12,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:47:17] 2025-06-04 12:47:12,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139700273755968)>', '<ExcThread(monitor, started 139699297441536)>']
[2025-06-04 08:47:17] 2025-06-04 12:47:12,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:47:17] 2025-06-04 12:47:12,741 | INFO     | [monitor] control thread has ended
[2025-06-04 08:47:17] 2025-06-04 12:47:17,485 | INFO     | all workflow threads have been joined
[2025-06-04 08:47:17] 2025-06-04 12:47:17,486 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:47:17] 2025-06-04 12:47:17,486 | INFO     | traces error code: 0
[2025-06-04 08:47:17] 2025-06-04 12:47:17,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:47:17] 2025-06-04 12:47:17,571 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:47:17] 2025-06-04 12:47:17,575 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:47:17] 2025-06-04 12:47:17,579 [wrapper] pilotpid: 30342
[2025-06-04 08:47:17] 2025-06-04 12:47:17,583 [wrapper] Pilot exit status: 0
[2025-06-04 08:47:17] 2025-06-04 12:47:17,599 [wrapper] pandaids: 6678213730
[2025-06-04 08:47:17] 2025-06-04 12:47:17,640 [wrapper] cleanup supervisor_pilot 11338 30343
[2025-06-04 08:47:17] 2025-06-04 12:47:17,645 [wrapper] Test setup, not cleaning
[2025-06-04 08:47:17] 2025-06-04 12:47:17,649 [wrapper] apfmon messages muted
[2025-06-04 08:47:17] 2025-06-04 12:47:17,653 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:47:17] 2025-06-04 12:47:17,657 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:47:17]  *** Error codes and diagnostics ***
[2025-06-04 08:47:17]     "exeErrorCode": 0,
[2025-06-04 08:47:17]     "exeErrorDiag": "",
[2025-06-04 08:47:17]     "pilotErrorCode": 0,
[2025-06-04 08:47:17]     "pilotErrorDiag": "",
[2025-06-04 08:47:17]  *** Listing of results directory ***
[2025-06-04 08:47:17] total 385592
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas    495897 Jun  3 19:42 pilot3.tar.gz
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas      5111 Jun  3 19:50 queuedata.json
[2025-06-04 08:47:17] -rwx------ 1 boincer umatlas     37140 Jun  3 19:50 runpilot2-wrapper.sh
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas       100 Jun  4 07:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:47:17] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 07:44 run_atlas
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas       105 Jun  4 07:44 job.xml
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas 215613929 Jun  4 07:44 EVNT.45006593._001948.pool.root.1
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 08:47:17] drwxrwx--x 2 boincer umatlas      4096 Jun  4 07:44 shared
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:44 input.tar.gz
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas         0 Jun  4 07:44 boinc_lockfile
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 07:44 pandaJob.out
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas    986812 Jun  4 07:44 agis_schedconf.cvmfs.json
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas   1598969 Jun  4 07:44 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:47:17] drwx------ 4 boincer umatlas      4096 Jun  4 07:44 pilot3
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas        95 Jun  4 08:46 pilot_heartbeat.json
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas 173945528 Jun  4 08:46 HITS.45006595._048570.pool.root.1
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas       529 Jun  4 08:46 boinc_task_state.xml
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas      1047 Jun  4 08:46 memory_monitor_summary.json
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas    359330 Jun  4 08:46 log.45006595._048570.job.log.tgz.1
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas      7754 Jun  4 08:46 heartbeat.json
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas      5867 Jun  4 08:47 init_data.xml
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas        27 Jun  4 08:47 wrapper_checkpoint.txt
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:47 boinc_mmap_file
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas      4425 Jun  4 08:47 pilotlog.txt
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas    369519 Jun  4 08:47 log.45006595._048570.job.log.1
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas       357 Jun  4 08:47 output.list
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:47 runtime_log
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas    747520 Jun  4 08:47 result.tar.gz
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas      8656 Jun  4 08:47 runtime_log.err
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas       658 Jun  4 08:47 Dh1NDm5Zqg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVZmKDmh0Bgvm.diag
[2025-06-04 08:47:17] -rw-r--r-- 1 boincer umatlas     21246 Jun  4 08:47 stderr.txt
[2025-06-04 08:47:17] HITS file was successfully produced:
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas 173945528 Jun  4 08:46 shared/HITS.pool.root.1
[2025-06-04 08:47:17]  *** Contents of shared directory: ***
[2025-06-04 08:47:17] total 381684
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas 215613929 Jun  4 07:44 ATLAS.root_0
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:44 start_atlas.sh
[2025-06-04 08:47:17] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:44 input.tar.gz
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas 173945528 Jun  4 08:46 HITS.pool.root.1
[2025-06-04 08:47:17] -rw------- 1 boincer umatlas    747520 Jun  4 08:47 result.tar.gz
08:47:19 (26022): run_atlas exited; CPU time 40095.241371
08:47:19 (26022): called boinc_finish(0)

</stderr_txt>
]]>

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