Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:06:46 (28124): wrapper (7.7.26015): starting
01:06:46 (28124): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 01:06:46] Arguments: --nthreads 8
[2025-06-05 01:06:46] Threads: 8
[2025-06-05 01:06:46] Checking for CVMFS
[2025-06-05 01:06:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 01:06:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 01:06:46] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 01:06:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 01:06:47] 2.11.2.0 22738 33861 88924 146797 1 60 20577986 25165824 2361 130560 0 16835036 99.793 20405952 2085 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 01:06:47] CVMFS is ok
[2025-06-05 01:06:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:06:47] Checking for apptainer binary...
[2025-06-05 01:06:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 01:06:47] Running /usr/bin/apptainer --version
[2025-06-05 01:06:47] apptainer version 1.3.2-1.el7
[2025-06-05 01:06:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:06:55] cg-vwn395.simple-grid.lan
[2025-06-05 01:06:55] apptainer works
[2025-06-05 01:06:55] Set ATHENA_PROC_NUMBER=8
[2025-06-05 01:06:55] Set ATHENA_CORE_NUMBER=8
[2025-06-05 01:06:55] Starting ATLAS job with PandaID=6678390194
[2025-06-05 01:06:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 05:12:58]  *** The last 200 lines of the pilot log: ***
[2025-06-05 05:12:58] 2025-06-05 02:56:49,927 | INFO     | extracted standard info from prmon json
[2025-06-05 05:12:58] 2025-06-05 02:56:49,927 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 05:12:58] 2025-06-05 02:56:49,927 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 05:12:58] 2025-06-05 02:56:49,928 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 05:12:58] 2025-06-05 02:56:49,928 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 05:12:58] 2025-06-05 02:56:49,932 | INFO     | fitting pss+swap vs Time
[2025-06-05 05:12:58] 2025-06-05 02:56:49,933 | INFO     | sum of square deviations: 2996454322.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,935 | INFO     | sum of deviations: 23439749590.000015
[2025-06-05 05:12:58] 2025-06-05 02:56:49,935 | INFO     | mean x: 1749085603.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,935 | INFO     | mean y: 2466488.9483568077
[2025-06-05 05:12:58] 2025-06-05 02:56:49,935 | INFO     | -- intersect: -13679747267.752514
[2025-06-05 05:12:58] 2025-06-05 02:56:49,935 | INFO     | intersect: -13679747267.752514
[2025-06-05 05:12:58] 2025-06-05 02:56:49,936 | INFO     | chi2: 6.329688833424103
[2025-06-05 05:12:58] 2025-06-05 02:56:49,936 | INFO     | sum of square deviations: 2790348132.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,937 | INFO     | sum of deviations: 37347441814.5
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | mean x: 1749085450.5
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | mean y: 2476582.3125
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | -- intersect: -23408174705.96097
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | intersect: -23408174705.96097
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | chi2: 5.617251849288894
[2025-06-05 05:12:58] 2025-06-05 02:56:49,938 | INFO     | current chi2=5.617251849288894 (change=11.255481949968303 %)
[2025-06-05 05:12:58] 2025-06-05 02:56:49,939 | INFO     | right removable region: 207
[2025-06-05 05:12:58] 2025-06-05 02:56:49,939 | INFO     | sum of square deviations: 2790348132.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | sum of deviations: -47919317441.00001
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | mean x: 1749085755.5
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | mean y: 2519222.0096153845
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | -- intersect: 30039988234.616615
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | intersect: 30039988234.616615
[2025-06-05 05:12:58] 2025-06-05 02:56:49,941 | INFO     | chi2: 1.8508269861974447
[2025-06-05 05:12:58] 2025-06-05 02:56:49,942 | INFO     | current chi2=1.8508269861974447 (change=70.75958969066379 %)
[2025-06-05 05:12:58] 2025-06-05 02:56:49,942 | INFO     | sum of square deviations: 2593916542.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,944 | INFO     | sum of deviations: -73539812700.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,944 | INFO     | mean x: 1749085908.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,944 | INFO     | mean y: 2538938.5566502465
[2025-06-05 05:12:58] 2025-06-05 02:56:49,944 | INFO     | -- intersect: 49590660987.908775
[2025-06-05 05:12:58] 2025-06-05 02:56:49,944 | INFO     | intersect: 49590660987.908775
[2025-06-05 05:12:58] 2025-06-05 02:56:49,945 | INFO     | chi2: 0.9973037106661325
[2025-06-05 05:12:58] 2025-06-05 02:56:49,945 | INFO     | current chi2=0.9973037106661325 (change=46.11577861661127 %)
[2025-06-05 05:12:58] 2025-06-05 02:56:49,945 | INFO     | sum of square deviations: 2406926989.5
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | sum of deviations: -69081925136.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | mean x: 1749086060.5
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | mean y: 2535287.383838384
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | -- intersect: 50203572882.20622
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | intersect: 50203572882.20622
[2025-06-05 05:12:58] 2025-06-05 02:56:49,947 | INFO     | chi2: 0.9958258133151977
[2025-06-05 05:12:58] 2025-06-05 02:56:49,948 | INFO     | current chi2=0.9958258133151977 (change=0.14818929631252503 %)
[2025-06-05 05:12:58] 2025-06-05 02:56:49,948 | INFO     | left removable region: 30
[2025-06-05 05:12:58] 2025-06-05 02:56:49,948 | INFO     | sum of square deviations: 1719429448.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,949 | INFO     | sum of deviations: -35319943975.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,949 | INFO     | mean x: 1749086335.0
[2025-06-05 05:12:58] 2025-06-05 02:56:49,949 | INFO     | mean y: 2530464.350282486
[2025-06-05 05:12:58] 2025-06-05 02:56:49,949 | INFO     | -- intersect: 35931676281.58423
[2025-06-05 05:12:58] 2025-06-05 02:56:49,950 | INFO     | intersect: 35931676281.58423
[2025-06-05 05:12:58] 2025-06-05 02:56:49,950 | INFO     | chi2: 0.17836496560261939
[2025-06-05 05:12:58] 2025-06-05 02:56:49,950 | INFO     | -- intersect: 35931676281.58423
[2025-06-05 05:12:58] 2025-06-05 02:56:49,950 | INFO     | current memory leak: -20.54 B/s (using 177 data points, chi2=0.18)
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | ..............................
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . Timing measurements:
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . get job = 0 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . initial setup = 6 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . payload setup = 161 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . stage-in = 0 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,951 | INFO     | . payload execution = 13125 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,952 | INFO     | . stage-out = 3 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,952 | INFO     | . log creation = 1 s
[2025-06-05 05:12:58] 2025-06-05 02:56:49,952 | INFO     | ..............................
[2025-06-05 05:12:58] 2025-06-05 02:56:50,414 | INFO     | 
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | job summary report
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | --------------------------------------------------
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | PanDA job id: 6678390194
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | task id: 45006595
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | errors: (none)
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | pilot state: finished 
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | transexitcode: 0
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | exeerrorcode: 0
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | exeerrordiag: 
[2025-06-05 05:12:58] 2025-06-05 02:56:50,415 | INFO     | exitcode: 0
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | exitmsg: OK
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | cpuconsumptiontime: 48829 s
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | nevents: 400
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | neventsw: 0
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | pid: 10997
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | pgrp: 10997
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | corecount: 8
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | event service: False
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | sizes: {0: 2397114, 1: 2397369, 2: 2397369, 12: 2397397, 23: 2397425, 34: 2397453, 45: 2397609, 55: 2397637, 66: 2397665, 77: 2397693, 87: 2397749, 92: 2398263, 98
[2025-06-05 05:12:58] 2025-06-05 02:56:50,416 | INFO     | --------------------------------------------------
[2025-06-05 05:12:58] 2025-06-05 02:56:50,417 | INFO     | 
[2025-06-05 05:12:58] 2025-06-05 02:56:50,417 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-06-05 05:12:58] 2025-06-05 02:56:50,992 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,993 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 05:12:58] 2025-06-05 02:56:50,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,995 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 05:12:58] 2025-06-05 02:56:50,995 | INFO     | job 6678390194 has completed (purged errors)
[2025-06-05 05:12:58] 2025-06-05 02:56:50,995 | INFO     | overall cleanup function is called
[2025-06-05 05:12:58] 2025-06-05 02:56:52,007 | INFO     | --- collectZombieJob: --- 10, [10997]
[2025-06-05 05:12:58] 2025-06-05 02:56:52,007 | INFO     | zombie collector waiting for pid 10997
[2025-06-05 05:12:58] 2025-06-05 02:56:52,008 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 05:12:58] 2025-06-05 02:56:52,008 | INFO     | collected zombie processes
[2025-06-05 05:12:58] 2025-06-05 02:56:52,008 | INFO     | will attempt to kill all subprocesses of pid=10997
[2025-06-05 05:12:58] 2025-06-05 02:56:52,122 | INFO     | process IDs to be killed: [10997] (in reverse order)
[2025-06-05 05:12:58] 2025-06-05 02:56:52,738 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 05:12:58] 2025-06-05 02:56:52,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 05:12:58] 2025-06-05 02:56:52,742 | INFO     | did not find any defunct processes belonging to 10997
[2025-06-05 05:12:58] 2025-06-05 02:56:52,746 | INFO     | did not find any defunct processes belonging to 10997
[2025-06-05 05:12:58] 2025-06-05 02:56:52,747 | INFO     | ready for new job
[2025-06-05 05:12:58] 2025-06-05 02:56:52,747 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 05:12:58] 2025-06-05 02:56:52,749 | INFO     | **************************************
[2025-06-05 05:12:58] 2025-06-05 02:56:52,750 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 05:12:58] 2025-06-05 02:56:52,750 | INFO     | **************************************
[2025-06-05 05:12:58] 2025-06-05 02:56:52,750 | INFO     | 
[2025-06-05 05:12:58] 2025-06-05 02:56:52,750 | INFO     | pilot is running in a VM
[2025-06-05 05:12:58] 2025-06-05 02:56:52,751 | INFO     | architecture information:
[2025-06-05 05:12:58] 2025-06-05 02:56:52,752 | INFO     | executing command: cat /etc/os-release
[2025-06-05 05:12:58] 2025-06-05 02:56:52,911 | INFO     | cat /etc/os-release:
[2025-06-05 05:12:58] NAME="CentOS Linux"
[2025-06-05 05:12:58] VERSION="7 (Core)"
[2025-06-05 05:12:58] ID="centos"
[2025-06-05 05:12:58] ID_LIKE="rhel fedora"
[2025-06-05 05:12:58] VERSION_ID="7"
[2025-06-05 05:12:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 05:12:58] ANSI_COLOR="0;31"
[2025-06-05 05:12:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 05:12:58] HOME_URL="https://www.centos.org/"
[2025-06-05 05:12:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 05:12:58] 
[2025-06-05 05:12:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 05:12:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 05:12:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 05:12:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 05:12:58] 
[2025-06-05 05:12:58] 2025-06-05 02:56:52,911 | INFO     | **************************************
[2025-06-05 05:12:58] 2025-06-05 02:56:53,413 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-06-05 05:12:58] 2025-06-05 02:56:53,660 | INFO     | sufficient remaining disk space (497536729088 B)
[2025-06-05 05:12:58] 2025-06-05 02:56:53,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | INFO     | update_server=False
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 05:12:58] 2025-06-05 02:56:53,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 05:12:58] 2025-06-05 02:56:53,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 05:12:58] 2025-06-05 02:56:54,022 | INFO     | all data control threads have been joined
[2025-06-05 05:12:58] 2025-06-05 02:56:54,150 | INFO     | all job control threads have been joined
[2025-06-05 05:12:58] 2025-06-05 02:56:54,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:12:58] 2025-06-05 02:56:54,386 | INFO     | aborting loop
[2025-06-05 05:12:58] 2025-06-05 02:56:54,446 | INFO     | all payload control threads have been joined
[2025-06-05 05:12:58] 2025-06-05 02:56:54,624 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 05:12:58] 2025-06-05 02:56:54,665 | INFO     | [job] retrieve thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:54,957 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,013 | INFO     | [job] validate thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,019 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,028 | INFO     | [data] control thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 05:12:58] 2025-06-05 02:56:55,156 | INFO     | [job] control thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,391 | INFO     | [job] job monitor thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,442 | INFO     | [payload] validate_post thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,452 | INFO     | [payload] control thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,675 | INFO     | [data] copytool_out thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,778 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,904 | INFO     | [payload] failed_post thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:55,995 | INFO     | [data] copytool_in thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:56,145 | INFO     | [job] queue monitor thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:56,147 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:58,633 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 05:12:58] 2025-06-05 02:56:58,778 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140132802099008)>', '<ExcThread(monitor, started 140132199937792)>']
[2025-06-05 05:12:58] 2025-06-05 02:56:59,697 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 05:12:58] 2025-06-05 02:56:59,698 | INFO     | [monitor] control thread has ended
[2025-06-05 05:12:58] 2025-06-05 02:57:03,804 | INFO     | all workflow threads have been joined
[2025-06-05 05:12:58] 2025-06-05 02:57:03,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 05:12:58] 2025-06-05 02:57:03,805 | INFO     | traces error code: 0
[2025-06-05 05:12:58] 2025-06-05 02:57:03,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 05:12:58] 2025-06-05 02:57:04,193 [wrapper] ==== pilot stdout END ====
[2025-06-05 05:12:58] 2025-06-05 02:57:04,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 05:12:58] 2025-06-05 02:57:04,339 [wrapper] pilotpid: 32756
[2025-06-05 05:12:58] 2025-06-05 02:57:04,437 [wrapper] Pilot exit status: 0
[2025-06-05 05:12:58] 2025-06-05 02:57:04,862 [wrapper] pandaids: 6678390194
[2025-06-05 05:12:58] 2025-06-05 02:57:05,452 [wrapper] cleanup supervisor_pilot  8417 32757
[2025-06-05 05:12:58] 2025-06-05 02:57:05,536 [wrapper] Test setup, not cleaning
[2025-06-05 05:12:58] 2025-06-05 02:57:05,594 [wrapper] apfmon messages muted
[2025-06-05 05:12:58] 2025-06-05 02:57:05,657 [wrapper] ==== wrapper stdout END ====
[2025-06-05 05:12:58] 2025-06-05 02:57:05,757 [wrapper] ==== wrapper stderr END ====
[2025-06-05 05:12:58]  *** Error codes and diagnostics ***
[2025-06-05 05:12:58]     "exeErrorCode": 0,
[2025-06-05 05:12:58]     "exeErrorDiag": "",
[2025-06-05 05:12:58]     "pilotErrorCode": 0,
[2025-06-05 05:12:58]     "pilotErrorDiag": "",
[2025-06-05 05:12:58]  *** Listing of results directory ***
[2025-06-05 05:12:58] total 384276
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc    495897 Jun  4 07:59 pilot3.tar.gz
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc      5111 Jun  4 08:48 queuedata.json
[2025-06-05 05:12:58] -rwx------. 1 boinc boinc     37140 Jun  4 08:48 runpilot2-wrapper.sh
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc       100 Jun  5 01:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 05:12:58] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 01:06 run_atlas
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc       105 Jun  5 01:06 job.xml
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc      6392 Jun  5 01:06 init_data.xml
[2025-06-05 05:12:58] -rw-r--r--. 2 boinc boinc 214248470 Jun  5 01:06 EVNT.45006593._002186.pool.root.1
[2025-06-05 05:12:58] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:06 start_atlas.sh
[2025-06-05 05:12:58] drwxrwx--x. 2 boinc boinc        68 Jun  5 01:06 shared
[2025-06-05 05:12:58] -rw-r--r--. 2 boinc boinc    508876 Jun  5 01:06 input.tar.gz
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc         0 Jun  5 01:06 boinc_lockfile
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc      2524 Jun  5 01:06 pandaJob.out
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc    987032 Jun  5 01:10 agis_schedconf.cvmfs.json
[2025-06-05 05:12:58] drwx------. 4 boinc boinc      4096 Jun  5 01:10 pilot3
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc 172343221 Jun  5 04:54 HITS.45006595._054645.pool.root.1
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc       531 Jun  5 04:54 boinc_task_state.xml
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc      1014 Jun  5 04:55 memory_monitor_summary.json
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc   1598969 Jun  5 04:55 agis_ddmendpoints.agis.ALL.json
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc    389719 Jun  5 04:55 log.45006595._054645.job.log.tgz.1
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc        95 Jun  5 04:56 pilot_heartbeat.json
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc      7694 Jun  5 04:56 heartbeat.json
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc      4539 Jun  5 04:57 pilotlog.txt
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc   1154881 Jun  5 04:57 log.45006595._054645.job.log.1
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc       357 Jun  5 04:57 output.list
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc       620 Jun  5 04:57 runtime_log
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc   1566720 Jun  5 04:57 result.tar.gz
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc      8659 Jun  5 04:57 runtime_log.err
[2025-06-05 05:12:58] -rw-------. 1 boinc boinc       657 Jun  5 04:57 mLpLDmh6wg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdanKDmFV2M2m.diag
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc      8192 Jun  5 05:12 boinc_mmap_file
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc        28 Jun  5 05:12 wrapper_checkpoint.txt
[2025-06-05 05:12:58] -rw-r--r--. 1 boinc boinc     20502 Jun  5 05:12 stderr.txt
[2025-06-05 05:12:59] HITS file was successfully produced:
[2025-06-05 05:12:59] -rw-------. 1 boinc boinc 172343221 Jun  5 04:54 shared/HITS.pool.root.1
[2025-06-05 05:12:59]  *** Contents of shared directory: ***
[2025-06-05 05:12:59] total 379580
[2025-06-05 05:12:59] -rw-r--r--. 2 boinc boinc 214248470 Jun  5 01:06 ATLAS.root_0
[2025-06-05 05:12:59] -rw-r--r--. 2 boinc boinc     15093 Jun  5 01:06 start_atlas.sh
[2025-06-05 05:12:59] -rw-r--r--. 2 boinc boinc    508876 Jun  5 01:06 input.tar.gz
[2025-06-05 05:12:59] -rw-------. 1 boinc boinc 172343221 Jun  5 04:54 HITS.pool.root.1
[2025-06-05 05:12:59] -rw-------. 1 boinc boinc   1566720 Jun  5 04:57 result.tar.gz
05:13:00 (28124): run_atlas exited; CPU time 49022.467851
05:13:00 (28124): called boinc_finish(0)

</stderr_txt>
]]>

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