Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
10:33:42 (12667): wrapper (7.7.26015): starting
10:33:42 (12667): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 10:33:42] Arguments: --nthreads 12
[2025-06-04 10:33:42] Threads: 12
[2025-06-04 10:33:42] Checking for CVMFS
[2025-06-04 10:33:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 10:33:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 10:33:42] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 10:33:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 10:33:42] 2.10.0.0 29567 2695 113536 146786 0 187 15197158 16777216 913 130560 0 10999163 99.998 699216 7332 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-06-04 10:33:42] CVMFS is ok
[2025-06-04 10:33:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 10:33:42] Checking for apptainer binary...
[2025-06-04 10:33:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 10:33:42] Running /usr/bin/apptainer --version
[2025-06-04 10:33:42] apptainer version 1.3.6-150600.4.9.1
[2025-06-04 10:33:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 10:33:42] boinc-runner
[2025-06-04 10:33:42] apptainer works
[2025-06-04 10:33:42] Set ATHENA_PROC_NUMBER=12
[2025-06-04 10:33:42] Set ATHENA_CORE_NUMBER=12
[2025-06-04 10:33:42] Starting ATLAS job with PandaID=6678390150
[2025-06-04 10:33:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:03:38]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:03:38]  filetype=log
[2025-06-04 11:03:38]  guid=dc68f057-c0b7-41fa-930d-79b8771636ee
[2025-06-04 11:03:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:03:38]  is_altstaged=None
[2025-06-04 11:03:38]  is_tar=False
[2025-06-04 11:03:38]  lfn=log.45006595._054601.job.log.tgz.1
[2025-06-04 11:03:38]  mtime=0
[2025-06-04 11:03:38]  protocol_id=None
[2025-06-04 11:03:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:03:38]  replicas=None
[2025-06-04 11:03:38]  scope=mc23_13p6TeV
[2025-06-04 11:03:38]  status=None
[2025-06-04 11:03:38]  status_code=0
[2025-06-04 11:03:38]  storage_token=
[2025-06-04 11:03:38]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6678390150/log.45006595._054601.job.log.tgz.1
[2025-06-04 11:03:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/2b/log.45006595._054601.job.log.tgz.1
[2025-06-04 11:03:38]  workdir=None
[2025-06-04 11:03:38] ]
[2025-06-04 11:03:38] 2025-06-04 16:03:12,467 | INFO     | transferring file log.45006595._054601.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6678390150/log.45006595._054601.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-04 11:03:38] 2025-06-04 16:03:12,467 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6678390150/log.45006595._054601.job.log.tgz.1 /var/lib/boinc/slots/0/log.45006595._054601.job
[2025-06-04 11:03:38] 2025-06-04 16:03:12,480 | INFO     | adding to output.list: log.45006595._054601.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/2b/log.45006595._054601.job.log.tg
[2025-06-04 11:03:38] 2025-06-04 16:03:12,480 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:03:38] 2025-06-04 16:03:12,480 | INFO     | summary of transferred files:
[2025-06-04 11:03:38] 2025-06-04 16:03:12,480 | INFO     |  -- lfn=log.45006595._054601.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:03:38] 2025-06-04 16:03:12,480 | INFO     | stage-out finished correctly
[2025-06-04 11:03:38] 2025-06-04 16:03:13,896 | INFO     | monitor loop #140: job 0:6678390150 is in state 'finished'
[2025-06-04 11:03:38] 2025-06-04 16:03:13,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:03:38] 2025-06-04 16:03:14,182 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:03:38] 2025-06-04 16:03:16,288 | INFO     | job 6678390150 has state=finished
[2025-06-04 11:03:38] 2025-06-04 16:03:16,288 | INFO     | preparing for final server update for job 6678390150 in state='finished'
[2025-06-04 11:03:38] 2025-06-04 16:03:16,289 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:03:38] 2025-06-04 16:03:16,289 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:03:38] 2025-06-04 16:03:16,289 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:03:38] 2025-06-04 16:03:16,289 | INFO     | job 6678390150 has finished - writing final server update
[2025-06-04 11:03:38] 2025-06-04 16:03:16,289 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:03:38] 2025-06-04 16:03:16,290 | INFO     | executing command: lscpu
[2025-06-04 11:03:38] 2025-06-04 16:03:16,311 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:03:38] 2025-06-04 16:03:16,398 | INFO     | monitor loop #141: job 0:6678390150 is in state 'finished'
[2025-06-04 11:03:38] 2025-06-04 16:03:16,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,425 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678390150/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | INFO     | extracted standard info from prmon json
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:03:38] 2025-06-04 16:03:18,426 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | sum of square deviations: 3294945.5
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | sum of deviations: 153566341.0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | mean x: 1749052192.5
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | mean y: 2936858.8181818184
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | -- intersect: -81514510218.91122
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | intersect: -81514510218.91122
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | chi2: 0.0014242630579485915
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | -- intersect: -81514510218.91122
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | current memory leak: 46.61 B/s (using 22 data points, chi2=0.00)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | ..............................
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | . Timing measurements:
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | . get job = 0 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,427 | INFO     | . initial setup = 2 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | . payload setup = 3 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | . stage-in = 0 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | . payload execution = 1742 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | . stage-out = 0 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | . log creation = 0 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,428 | INFO     | ..............................
[2025-06-04 11:03:38] 2025-06-04 16:03:18,454 | INFO     | 
[2025-06-04 11:03:38] 2025-06-04 16:03:18,454 | INFO     | job summary report
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | --------------------------------------------------
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | PanDA job id: 6678390150
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | task id: 45006595
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | errors: (none)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | pilot state: finished 
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | transexitcode: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | exeerrorcode: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | exeerrordiag: 
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | exitcode: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | exitmsg: OK
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | cpuconsumptiontime: 18658 s
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | nevents: 400
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | neventsw: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | pid: 23609
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | pgrp: 23609
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | corecount: 12
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | event service: False
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | sizes: {0: 2397340, 2: 2397546, 11: 2397574, 1749: 2422416, 1750: 2431357, 1752: 2431413, 1756: 2431711}
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | --------------------------------------------------
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | 
[2025-06-04 11:03:38] 2025-06-04 16:03:18,455 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | job 6678390150 has completed (purged errors)
[2025-06-04 11:03:38] 2025-06-04 16:03:18,468 | INFO     | overall cleanup function is called
[2025-06-04 11:03:38] 2025-06-04 16:03:19,476 | INFO     | --- collectZombieJob: --- 10, [23609]
[2025-06-04 11:03:38] 2025-06-04 16:03:19,476 | INFO     | zombie collector waiting for pid 23609
[2025-06-04 11:03:38] 2025-06-04 16:03:19,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:03:38] 2025-06-04 16:03:19,476 | INFO     | collected zombie processes
[2025-06-04 11:03:38] 2025-06-04 16:03:19,476 | INFO     | will attempt to kill all subprocesses of pid=23609
[2025-06-04 11:03:38] 2025-06-04 16:03:19,527 | INFO     | process IDs to be killed: [23609] (in reverse order)
[2025-06-04 11:03:38] 2025-06-04 16:03:19,561 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:03:38] 2025-06-04 16:03:19,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:03:38] 2025-06-04 16:03:19,563 | INFO     | did not find any defunct processes belonging to 23609
[2025-06-04 11:03:38] 2025-06-04 16:03:19,565 | INFO     | did not find any defunct processes belonging to 23609
[2025-06-04 11:03:38] 2025-06-04 16:03:19,565 | INFO     | ready for new job
[2025-06-04 11:03:38] 2025-06-04 16:03:19,565 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:03:38] 2025-06-04 16:03:19,566 | INFO     | **************************************
[2025-06-04 11:03:38] 2025-06-04 16:03:19,566 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:03:38] 2025-06-04 16:03:19,566 | INFO     | **************************************
[2025-06-04 11:03:38] 2025-06-04 16:03:19,566 | INFO     | 
[2025-06-04 11:03:38] 2025-06-04 16:03:19,568 | INFO     | architecture information:
[2025-06-04 11:03:38] 2025-06-04 16:03:19,568 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:03:38] 2025-06-04 16:03:19,579 | INFO     | cat /etc/os-release:
[2025-06-04 11:03:38] NAME="CentOS Linux"
[2025-06-04 11:03:38] VERSION="7 (Core)"
[2025-06-04 11:03:38] ID="centos"
[2025-06-04 11:03:38] ID_LIKE="rhel fedora"
[2025-06-04 11:03:38] VERSION_ID="7"
[2025-06-04 11:03:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:03:38] ANSI_COLOR="0;31"
[2025-06-04 11:03:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:03:38] HOME_URL="https://www.centos.org/"
[2025-06-04 11:03:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:03:38] 
[2025-06-04 11:03:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:03:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:03:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:03:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:03:38] 
[2025-06-04 11:03:38] 2025-06-04 16:03:19,580 | INFO     | **************************************
[2025-06-04 11:03:38] 2025-06-04 16:03:20,082 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | INFO     | sufficient remaining disk space (3889080303616 B)
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | INFO     | update_server=False
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 11:03:38] 2025-06-04 16:03:20,094 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:03:38] 2025-06-04 16:03:20,095 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:03:38] 2025-06-04 16:03:20,095 | INFO     | aborting loop
[2025-06-04 11:03:38] 2025-06-04 16:03:20,095 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:03:38] 2025-06-04 16:03:20,095 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:03:38] 2025-06-04 16:03:20,227 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:03:38] 2025-06-04 16:03:20,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:03:38] 2025-06-04 16:03:20,882 | INFO     | all data control threads have been joined
[2025-06-04 11:03:38] 2025-06-04 16:03:21,098 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,099 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,100 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,226 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,363 | INFO     | all job control threads have been joined
[2025-06-04 11:03:38] 2025-06-04 16:03:21,526 | INFO     | all payload control threads have been joined
[2025-06-04 11:03:38] 2025-06-04 16:03:21,650 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,886 | INFO     | [data] control thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:21,950 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,032 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,036 | INFO     | [job] validate thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,108 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,368 | INFO     | [job] control thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,523 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,531 | INFO     | [payload] control thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:22,533 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:24,230 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:30,638 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:03:38] 2025-06-04 16:03:31,642 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:03:38] 2025-06-04 16:03:33,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140524140562240)>', '<ExcThread(monitor, started 140523637548800)>']
[2025-06-04 11:03:38] 2025-06-04 16:03:34,162 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:03:38] 2025-06-04 16:03:34,162 | INFO     | [monitor] control thread has ended
[2025-06-04 11:03:38] 2025-06-04 16:03:38,222 | INFO     | all workflow threads have been joined
[2025-06-04 11:03:38] 2025-06-04 16:03:38,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:03:38] 2025-06-04 16:03:38,222 | INFO     | traces error code: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:38,222 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:03:38] 2025-06-04 16:03:38,285 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:03:38] 2025-06-04 16:03:38,287 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:03:38] 2025-06-04 16:03:38,288 [wrapper] pilotpid: 16576
[2025-06-04 11:03:38] 2025-06-04 16:03:38,289 [wrapper] Pilot exit status: 0
[2025-06-04 11:03:38] 2025-06-04 16:03:38,297 [wrapper] pandaids: 6678390150
[2025-06-04 11:03:38] 2025-06-04 16:03:38,316 [wrapper] cleanup supervisor_pilot  7147 16577
[2025-06-04 11:03:38] 2025-06-04 16:03:38,317 [wrapper] Test setup, not cleaning
[2025-06-04 11:03:38] 2025-06-04 16:03:38,318 [wrapper] apfmon messages muted
[2025-06-04 11:03:38] 2025-06-04 16:03:38,320 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:03:38] 2025-06-04 16:03:38,321 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:03:38]  *** Error codes and diagnostics ***
[2025-06-04 11:03:38]     "exeErrorCode": 0,
[2025-06-04 11:03:38]     "exeErrorDiag": "",
[2025-06-04 11:03:38]     "pilotErrorCode": 0,
[2025-06-04 11:03:38]     "pilotErrorDiag": "",
[2025-06-04 11:03:38]  *** Listing of results directory ***
[2025-06-04 11:03:38] total 393584
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc    495897 Jun  4 00:59 pilot3.tar.gz
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:45 queuedata.json
[2025-06-04 11:03:38] -rwx------ 1 boinc boinc     37140 Jun  4 01:45 runpilot2-wrapper.sh
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc       100 Jun  4 10:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:03:38] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 10:33 run_atlas
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc       105 Jun  4 10:33 job.xml
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:33 start_atlas.sh
[2025-06-04 11:03:38] drwxrwx--x 1 boinc boinc        76 Jun  4 10:33 shared
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc    508878 Jun  4 10:33 input.tar.gz
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc     10044 Jun  4 10:33 init_data.xml
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc 217133782 Jun  4 10:33 EVNT.45006593._002185.pool.root.1
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc         0 Jun  4 10:33 boinc_lockfile
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc      2524 Jun  4 10:33 pandaJob.out
[2025-06-04 11:03:38] -rw------- 1 boinc boinc    990989 Jun  4 10:33 agis_schedconf.cvmfs.json
[2025-06-04 11:03:38] -rw------- 1 boinc boinc   1598969 Jun  4 10:33 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:03:38] drwx------ 1 boinc boinc       368 Jun  4 10:33 pilot3
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc       530 Jun  4 11:02 boinc_task_state.xml
[2025-06-04 11:03:38] -rw------- 1 boinc boinc 181009607 Jun  4 11:02 HITS.45006595._054601.pool.root.1
[2025-06-04 11:03:38] -rw------- 1 boinc boinc        95 Jun  4 11:02 pilot_heartbeat.json
[2025-06-04 11:03:38] -rw------- 1 boinc boinc      1024 Jun  4 11:03 memory_monitor_summary.json
[2025-06-04 11:03:38] -rw------- 1 boinc boinc    320535 Jun  4 11:03 log.45006595._054601.job.log.tgz.1
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc      8192 Jun  4 11:03 boinc_mmap_file
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc        27 Jun  4 11:03 wrapper_checkpoint.txt
[2025-06-04 11:03:38] -rw------- 1 boinc boinc      7677 Jun  4 11:03 heartbeat.json
[2025-06-04 11:03:38] -rw------- 1 boinc boinc      4550 Jun  4 11:03 pilotlog.txt
[2025-06-04 11:03:38] -rw------- 1 boinc boinc    209073 Jun  4 11:03 log.45006595._054601.job.log.1
[2025-06-04 11:03:38] -rw------- 1 boinc boinc       357 Jun  4 11:03 output.list
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc       620 Jun  4 11:03 runtime_log
[2025-06-04 11:03:38] -rw------- 1 boinc boinc    552960 Jun  4 11:03 result.tar.gz
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc      8683 Jun  4 11:03 runtime_log.err
[2025-06-04 11:03:38] -rw------- 1 boinc boinc       651 Jun  4 11:03 MOaKDmw3wg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNanKDmJwFR1m.diag
[2025-06-04 11:03:38] -rw-r--r-- 1 boinc boinc     20876 Jun  4 11:03 stderr.txt
[2025-06-04 11:03:38] HITS file was successfully produced:
[2025-06-04 11:03:38] -rw------- 1 boinc boinc 181009607 Jun  4 11:02 shared/HITS.pool.root.1
[2025-06-04 11:03:38]  *** Contents of shared directory: ***
[2025-06-04 11:03:38] total 389872
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc     15093 Jun  4 10:33 start_atlas.sh
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc    508878 Jun  4 10:33 input.tar.gz
[2025-06-04 11:03:38] -rw-r--r-- 2 boinc boinc 217133782 Jun  4 10:33 ATLAS.root_0
[2025-06-04 11:03:38] -rw------- 1 boinc boinc 181009607 Jun  4 11:02 HITS.pool.root.1
[2025-06-04 11:03:38] -rw------- 1 boinc boinc    552960 Jun  4 11:03 result.tar.gz
11:03:39 (12667): run_atlas exited; CPU time 18665.808206
11:03:39 (12667): called boinc_finish(0)

</stderr_txt>
]]>

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