Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
11:03:42 (6249): wrapper (7.7.26015): starting
11:03:42 (6249): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 11:03:42] Arguments: --nthreads 12
[2025-06-04 11:03:42] Threads: 12
[2025-06-04 11:03:42] Checking for CVMFS
[2025-06-04 11:03:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 11:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 11:03:43] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 11:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 11:03:43] 2.10.0.0 29567 2725 113596 146786 2 187 15201524 16777216 922 130560 0 11113048 99.998 699220 7293 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-06-04 11:03:43] CVMFS is ok
[2025-06-04 11:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:03:43] Checking for apptainer binary...
[2025-06-04 11:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 11:03:43] Running /usr/bin/apptainer --version
[2025-06-04 11:03:43] apptainer version 1.3.6-150600.4.9.1
[2025-06-04 11:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:03:43] boinc-runner
[2025-06-04 11:03:43] apptainer works
[2025-06-04 11:03:43] Set ATHENA_PROC_NUMBER=12
[2025-06-04 11:03:43] Set ATHENA_CORE_NUMBER=12
[2025-06-04 11:03:43] Starting ATLAS job with PandaID=6678390191
[2025-06-04 11:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 11:32:45]  *** The last 200 lines of the pilot log: ***
[2025-06-04 11:32:45]  filetype=log
[2025-06-04 11:32:45]  guid=f82b3a20-f694-4a03-9f7d-654900bf5d36
[2025-06-04 11:32:45]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 11:32:45]  is_altstaged=None
[2025-06-04 11:32:45]  is_tar=False
[2025-06-04 11:32:45]  lfn=log.45006595._054642.job.log.tgz.1
[2025-06-04 11:32:45]  mtime=0
[2025-06-04 11:32:45]  protocol_id=None
[2025-06-04 11:32:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 11:32:45]  replicas=None
[2025-06-04 11:32:45]  scope=mc23_13p6TeV
[2025-06-04 11:32:45]  status=None
[2025-06-04 11:32:45]  status_code=0
[2025-06-04 11:32:45]  storage_token=
[2025-06-04 11:32:45]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6678390191/log.45006595._054642.job.log.tgz.1
[2025-06-04 11:32:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/79/log.45006595._054642.job.log.tgz.1
[2025-06-04 11:32:45]  workdir=None
[2025-06-04 11:32:45] ]
[2025-06-04 11:32:45] 2025-06-04 16:32:22,317 | INFO     | transferring file log.45006595._054642.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6678390191/log.45006595._054642.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-06-04 11:32:45] 2025-06-04 16:32:22,317 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6678390191/log.45006595._054642.job.log.tgz.1 /var/lib/boinc/slots/0/log.45006595._054642.job
[2025-06-04 11:32:45] 2025-06-04 16:32:22,329 | INFO     | adding to output.list: log.45006595._054642.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/79/log.45006595._054642.job.log.tg
[2025-06-04 11:32:45] 2025-06-04 16:32:22,329 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 11:32:45] 2025-06-04 16:32:22,329 | INFO     | summary of transferred files:
[2025-06-04 11:32:45] 2025-06-04 16:32:22,329 | INFO     |  -- lfn=log.45006595._054642.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 11:32:45] 2025-06-04 16:32:22,329 | INFO     | stage-out finished correctly
[2025-06-04 11:32:45] 2025-06-04 16:32:23,774 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 11:32:45] 2025-06-04 16:32:23,797 | INFO     | job 6678390191 has state=finished
[2025-06-04 11:32:45] 2025-06-04 16:32:23,797 | INFO     | preparing for final server update for job 6678390191 in state='finished'
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | this job has now completed (state=finished)
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | log transfer has been attempted: DONE
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | job 6678390191 has finished - writing final server update
[2025-06-04 11:32:45] 2025-06-04 16:32:24,082 | INFO     | total number of processed events: 400 (read)
[2025-06-04 11:32:45] 2025-06-04 16:32:24,085 | INFO     | executing command: lscpu
[2025-06-04 11:32:45] 2025-06-04 16:32:24,108 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 11:32:45] 2025-06-04 16:32:25,826 | WARNING  | process 17141 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 11:32:45] 2025-06-04 16:32:25,826 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678390191/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:32:45] 2025-06-04 16:32:25,858 | INFO     | number of running child processes to parent process 17141: 1
[2025-06-04 11:32:45] 2025-06-04 16:32:25,858 | INFO     | maximum number of monitored processes: 6
[2025-06-04 11:32:45] 2025-06-04 16:32:26,193 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678390191/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | INFO     | extracted standard info from prmon json
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 11:32:45] 2025-06-04 16:32:26,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | fitting pss+swap vs Time
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | sum of square deviations: 2865170.0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | sum of deviations: -126331488.00000006
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | mean x: 1749053963.0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | mean y: 2718611.761904762
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | -- intersect: 77122257675.09393
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | intersect: 77122257675.09393
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | chi2: 0.007232144928689581
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | -- intersect: 77122257675.09393
[2025-06-04 11:32:45] 2025-06-04 16:32:26,195 | INFO     | current memory leak: -44.09 B/s (using 21 data points, chi2=0.01)
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | ..............................
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . Timing measurements:
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . get job = 0 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . initial setup = 2 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . payload setup = 3 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . stage-in = 0 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . payload execution = 1693 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . stage-out = 0 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | . log creation = 0 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,196 | INFO     | ..............................
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | 
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | job summary report
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | --------------------------------------------------
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | PanDA job id: 6678390191
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | task id: 45006595
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | errors: (none)
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | pilot state: finished 
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | transexitcode: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | exeerrorcode: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | exeerrordiag: 
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | exitcode: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | exitmsg: OK
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | cpuconsumptiontime: 18321 s
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | nevents: 400
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | neventsw: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | pid: 17141
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | pgrp: 17141
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | corecount: 12
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | event service: False
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | sizes: {0: 2397170, 1: 2397369, 3: 2397575, 11: 2397603, 1700: 2431359, 1702: 2431359, 1704: 2431657}
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | --------------------------------------------------
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | 
[2025-06-04 11:32:45] 2025-06-04 16:32:26,239 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | job 6678390191 has completed (purged errors)
[2025-06-04 11:32:45] 2025-06-04 16:32:26,252 | INFO     | overall cleanup function is called
[2025-06-04 11:32:45] 2025-06-04 16:32:27,261 | INFO     | --- collectZombieJob: --- 10, [17141]
[2025-06-04 11:32:45] 2025-06-04 16:32:27,261 | INFO     | zombie collector waiting for pid 17141
[2025-06-04 11:32:45] 2025-06-04 16:32:27,261 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 11:32:45] 2025-06-04 16:32:27,261 | INFO     | collected zombie processes
[2025-06-04 11:32:45] 2025-06-04 16:32:27,261 | INFO     | will attempt to kill all subprocesses of pid=17141
[2025-06-04 11:32:45] 2025-06-04 16:32:27,301 | INFO     | process IDs to be killed: [17141] (in reverse order)
[2025-06-04 11:32:45] 2025-06-04 16:32:27,325 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 11:32:45] 2025-06-04 16:32:27,325 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 11:32:45] 2025-06-04 16:32:27,328 | INFO     | did not find any defunct processes belonging to 17141
[2025-06-04 11:32:45] 2025-06-04 16:32:27,331 | INFO     | did not find any defunct processes belonging to 17141
[2025-06-04 11:32:45] 2025-06-04 16:32:27,331 | INFO     | ready for new job
[2025-06-04 11:32:45] 2025-06-04 16:32:27,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 11:32:45] 2025-06-04 16:32:27,332 | INFO     | **************************************
[2025-06-04 11:32:45] 2025-06-04 16:32:27,332 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 11:32:45] 2025-06-04 16:32:27,332 | INFO     | **************************************
[2025-06-04 11:32:45] 2025-06-04 16:32:27,332 | INFO     | 
[2025-06-04 11:32:45] 2025-06-04 16:32:27,332 | INFO     | architecture information:
[2025-06-04 11:32:45] 2025-06-04 16:32:27,333 | INFO     | executing command: cat /etc/os-release
[2025-06-04 11:32:45] 2025-06-04 16:32:27,343 | INFO     | cat /etc/os-release:
[2025-06-04 11:32:45] NAME="CentOS Linux"
[2025-06-04 11:32:45] VERSION="7 (Core)"
[2025-06-04 11:32:45] ID="centos"
[2025-06-04 11:32:45] ID_LIKE="rhel fedora"
[2025-06-04 11:32:45] VERSION_ID="7"
[2025-06-04 11:32:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 11:32:45] ANSI_COLOR="0;31"
[2025-06-04 11:32:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 11:32:45] HOME_URL="https://www.centos.org/"
[2025-06-04 11:32:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 11:32:45] 
[2025-06-04 11:32:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 11:32:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 11:32:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 11:32:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 11:32:45] 
[2025-06-04 11:32:45] 2025-06-04 16:32:27,343 | INFO     | **************************************
[2025-06-04 11:32:45] 2025-06-04 16:32:27,846 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-04 11:32:45] 2025-06-04 16:32:27,856 | INFO     | sufficient remaining disk space (3890105810944 B)
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | INFO     | update_server=False
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 11:32:45] 2025-06-04 16:32:27,857 | INFO     | aborting loop
[2025-06-04 11:32:45] 2025-06-04 16:32:27,858 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 11:32:45] 2025-06-04 16:32:27,998 | INFO     | all data control threads have been joined
[2025-06-04 11:32:45] 2025-06-04 16:32:28,016 | INFO     | all job control threads have been joined
[2025-06-04 11:32:45] 2025-06-04 16:32:28,188 | INFO     | all payload control threads have been joined
[2025-06-04 11:32:45] 2025-06-04 16:32:28,808 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 11:32:45] 2025-06-04 16:32:28,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 11:32:45] 2025-06-04 16:32:28,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 11:32:45] 2025-06-04 16:32:28,862 | INFO     | [job] retrieve thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:28,862 | INFO     | [job] queue monitor thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:28,862 | INFO     | [job] job monitor thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,003 | INFO     | [data] control thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,021 | INFO     | [job] control thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,036 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,128 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,193 | INFO     | [payload] control thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,427 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,466 | INFO     | [payload] validate_post thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,563 | INFO     | [data] copytool_in thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,610 | INFO     | [payload] failed_post thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,801 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 11:32:45] 2025-06-04 16:32:29,862 | INFO     | [data] copytool_out thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:29,926 | INFO     | [job] validate thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:33,806 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:38,039 | INFO     | job.realtimelogging is not enabled
[2025-06-04 11:32:45] 2025-06-04 16:32:39,044 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 11:32:45] 2025-06-04 16:32:40,646 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140220839921472)>', '<ExcThread(monitor, started 140220079011584)>']
[2025-06-04 11:32:45] 2025-06-04 16:32:40,858 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 11:32:45] 2025-06-04 16:32:40,858 | INFO     | [monitor] control thread has ended
[2025-06-04 11:32:45] 2025-06-04 16:32:45,651 | INFO     | all workflow threads have been joined
[2025-06-04 11:32:45] 2025-06-04 16:32:45,651 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 11:32:45] 2025-06-04 16:32:45,651 | INFO     | traces error code: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:45,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 11:32:45] 2025-06-04 16:32:45,693 [wrapper] ==== pilot stdout END ====
[2025-06-04 11:32:45] 2025-06-04 16:32:45,696 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 11:32:45] 2025-06-04 16:32:45,698 [wrapper] pilotpid: 10083
[2025-06-04 11:32:45] 2025-06-04 16:32:45,699 [wrapper] Pilot exit status: 0
[2025-06-04 11:32:45] 2025-06-04 16:32:45,706 [wrapper] pandaids: 6678390191
[2025-06-04 11:32:45] 2025-06-04 16:32:45,724 [wrapper] cleanup supervisor_pilot   587 10084
[2025-06-04 11:32:45] 2025-06-04 16:32:45,727 [wrapper] Test setup, not cleaning
[2025-06-04 11:32:45] 2025-06-04 16:32:45,729 [wrapper] apfmon messages muted
[2025-06-04 11:32:45] 2025-06-04 16:32:45,730 [wrapper] ==== wrapper stdout END ====
[2025-06-04 11:32:45] 2025-06-04 16:32:45,732 [wrapper] ==== wrapper stderr END ====
[2025-06-04 11:32:45]  *** Error codes and diagnostics ***
[2025-06-04 11:32:45]     "exeErrorCode": 0,
[2025-06-04 11:32:45]     "exeErrorDiag": "",
[2025-06-04 11:32:45]     "pilotErrorCode": 0,
[2025-06-04 11:32:45]     "pilotErrorDiag": "",
[2025-06-04 11:32:45]  *** Listing of results directory ***
[2025-06-04 11:32:45] total 392976
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc    495897 Jun  4 00:59 pilot3.tar.gz
[2025-06-04 11:32:45] -rwx------ 1 boinc boinc     37140 Jun  4 01:45 runpilot2-wrapper.sh
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc      5111 Jun  4 01:45 queuedata.json
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc       100 Jun  4 11:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 11:32:45] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 11:03 run_atlas
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc       105 Jun  4 11:03 job.xml
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:03 start_atlas.sh
[2025-06-04 11:32:45] drwxrwx--x 1 boinc boinc        76 Jun  4 11:03 shared
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc    508878 Jun  4 11:03 input.tar.gz
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc     10044 Jun  4 11:03 init_data.xml
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc 214248470 Jun  4 11:03 EVNT.45006593._002186.pool.root.1
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc         0 Jun  4 11:03 boinc_lockfile
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc      2524 Jun  4 11:03 pandaJob.out
[2025-06-04 11:32:45] -rw------- 1 boinc boinc    990989 Jun  4 11:03 agis_schedconf.cvmfs.json
[2025-06-04 11:32:45] -rw------- 1 boinc boinc   1598969 Jun  4 11:03 agis_ddmendpoints.agis.ALL.json
[2025-06-04 11:32:45] drwx------ 1 boinc boinc       368 Jun  4 11:03 pilot3
[2025-06-04 11:32:45] -rw------- 1 boinc boinc        95 Jun  4 11:31 pilot_heartbeat.json
[2025-06-04 11:32:45] -rw------- 1 boinc boinc 183250013 Jun  4 11:32 HITS.45006595._054642.pool.root.1
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc       529 Jun  4 11:32 boinc_task_state.xml
[2025-06-04 11:32:45] -rw------- 1 boinc boinc      1024 Jun  4 11:32 memory_monitor_summary.json
[2025-06-04 11:32:45] -rw------- 1 boinc boinc    341293 Jun  4 11:32 log.45006595._054642.job.log.tgz.1
[2025-06-04 11:32:45] -rw------- 1 boinc boinc      7684 Jun  4 11:32 heartbeat.json
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc      8192 Jun  4 11:32 boinc_mmap_file
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc        27 Jun  4 11:32 wrapper_checkpoint.txt
[2025-06-04 11:32:45] -rw------- 1 boinc boinc      4427 Jun  4 11:32 pilotlog.txt
[2025-06-04 11:32:45] -rw------- 1 boinc boinc    203774 Jun  4 11:32 log.45006595._054642.job.log.1
[2025-06-04 11:32:45] -rw------- 1 boinc boinc       357 Jun  4 11:32 output.list
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc       620 Jun  4 11:32 runtime_log
[2025-06-04 11:32:45] -rw------- 1 boinc boinc    563200 Jun  4 11:32 result.tar.gz
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc      8683 Jun  4 11:32 runtime_log.err
[2025-06-04 11:32:45] -rw------- 1 boinc boinc       653 Jun  4 11:32 BknLDmh3wg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLanKDmPCi3Fn.diag
[2025-06-04 11:32:45] -rw-r--r-- 1 boinc boinc     20853 Jun  4 11:32 stderr.txt
[2025-06-04 11:32:45] HITS file was successfully produced:
[2025-06-04 11:32:45] -rw------- 1 boinc boinc 183250013 Jun  4 11:32 shared/HITS.pool.root.1
[2025-06-04 11:32:45]  *** Contents of shared directory: ***
[2025-06-04 11:32:45] total 389252
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc     15093 Jun  4 11:03 start_atlas.sh
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc    508878 Jun  4 11:03 input.tar.gz
[2025-06-04 11:32:45] -rw-r--r-- 2 boinc boinc 214248470 Jun  4 11:03 ATLAS.root_0
[2025-06-04 11:32:45] -rw------- 1 boinc boinc 183250013 Jun  4 11:32 HITS.pool.root.1
[2025-06-04 11:32:45] -rw------- 1 boinc boinc    563200 Jun  4 11:32 result.tar.gz
11:32:46 (6249): run_atlas exited; CPU time 18329.313779
11:32:46 (6249): called boinc_finish(0)

</stderr_txt>
]]>

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