Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:01 (2832818): wrapper (7.7.26015): starting
00:51:01 (2832818): wrapper: running run_atlas (--nthreads 6)
[2025-06-05 00:51:01] Arguments: --nthreads 6
[2025-06-05 00:51:01] Threads: 6
[2025-06-05 00:51:01] Checking for CVMFS
[2025-06-05 00:51:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:51:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:51:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:51:02] 2.11.5.0 1253570 2673 87332 146786 3 56 14841861 20971521 929 130560 0 4352086 99.996 675245 94 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-06-05 00:51:02] CVMFS is ok
[2025-06-05 00:51:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:51:02] Checking for apptainer binary...
[2025-06-05 00:51:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:51:02] Running /usr/bin/apptainer --version
[2025-06-05 00:51:02] apptainer version 1.3.6-1.el9
[2025-06-05 00:51:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:51:02] testio006
[2025-06-05 00:51:02] apptainer works
[2025-06-05 00:51:02] Set ATHENA_PROC_NUMBER=6
[2025-06-05 00:51:02] Set ATHENA_CORE_NUMBER=6
[2025-06-05 00:51:02] Starting ATLAS job with PandaID=6678390107
[2025-06-05 00:51:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:18:26]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:18:26] 2025-06-04 17:17:29,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:32,050 | INFO     | monitor loop #394: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:32,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:34,553 | INFO     | monitor loop #395: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:34,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:37,056 | INFO     | monitor loop #396: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:37,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:39,559 | INFO     | monitor loop #397: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:39,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:42,062 | INFO     | monitor loop #398: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:42,062 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:44,565 | INFO     | monitor loop #399: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:44,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:47,068 | INFO     | monitor loop #400: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:47,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:49,571 | INFO     | monitor loop #401: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:49,571 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:51,299 | INFO     | PID=2836517 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 02:18:26] 2025-06-04 17:17:51,300 | INFO     | .. there are 2 such processes running
[2025-06-05 02:18:26] 2025-06-04 17:17:52,074 | INFO     | monitor loop #402: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:52,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:54,577 | INFO     | monitor loop #403: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:54,577 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:57,080 | INFO     | monitor loop #404: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:57,080 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:17:59,583 | INFO     | monitor loop #405: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:17:59,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:02,086 | INFO     | monitor loop #406: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:18:02,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:04,589 | INFO     | monitor loop #407: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:18:04,589 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:06,337 | INFO     | 5217s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 02:18:26] 2025-06-04 17:18:07,092 | INFO     | monitor loop #408: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:18:07,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:09,595 | INFO     | monitor loop #409: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:18:09,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,098 | INFO     | monitor loop #410: job 0:6678390107 is in state 'finished'
[2025-06-05 02:18:26] 2025-06-04 17:18:12,098 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,177 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 02:18:26] 2025-06-04 17:18:12,178 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6678390107/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,178 | INFO     | extracted standard info from prmon json
[2025-06-05 02:18:26] 2025-06-04 17:18:12,178 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:18:26] 2025-06-04 17:18:12,178 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:18:26] 2025-06-04 17:18:12,179 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:18:26] 2025-06-04 17:18:12,179 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:18:26] 2025-06-04 17:18:12,180 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:18:26] 2025-06-04 17:18:12,180 | INFO     | sum of square deviations: 141539398.0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | sum of deviations: 9284873074.0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | mean x: 1749054918.0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | mean y: 2404746.6363636362
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | -- intersect: -114734220832.94592
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | intersect: -114734220832.94592
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | chi2: 0.960020478344495
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | -- intersect: -114734220832.94592
[2025-06-05 02:18:26] 2025-06-04 17:18:12,181 | INFO     | current memory leak: 65.60 B/s (using 77 data points, chi2=0.96)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | ..............................
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . Timing measurements:
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . get job = 0 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . initial setup = 4 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . payload setup = 4 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . stage-in = 0 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . payload execution = 5105 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . stage-out = 0 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | . log creation = 0 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,182 | INFO     | ..............................
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | 
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | job summary report
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | --------------------------------------------------
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | PanDA job id: 6678390107
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | task id: 45006595
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | errors: (none)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | pilot state: finished 
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | transexitcode: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,259 | INFO     | exeerrorcode: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | exeerrordiag: 
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | exitcode: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | exitmsg: OK
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | cpuconsumptiontime: 26099 s
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | nevents: 400
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | neventsw: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | pid: 2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | pgrp: 2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | corecount: 6
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | event service: False
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | sizes: {0: 2396514, 1: 2397370, 4: 2397576, 12: 2397604, 5110: 2423864, 5112: 2432805, 5113: 2432989, 5205: 2433159}
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | --------------------------------------------------
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | 
[2025-06-05 02:18:26] 2025-06-04 17:18:12,260 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-06-05 02:18:26] 2025-06-04 17:18:12,276 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,276 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,276 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,276 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,277 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | job 6678390107 has completed (purged errors)
[2025-06-05 02:18:26] 2025-06-04 17:18:12,278 | INFO     | overall cleanup function is called
[2025-06-05 02:18:26] 2025-06-04 17:18:13,285 | INFO     | --- collectZombieJob: --- 10, [2843043]
[2025-06-05 02:18:26] 2025-06-04 17:18:13,285 | INFO     | zombie collector waiting for pid 2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:13,285 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:18:26] 2025-06-04 17:18:13,285 | INFO     | collected zombie processes
[2025-06-05 02:18:26] 2025-06-04 17:18:13,285 | INFO     | will attempt to kill all subprocesses of pid=2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:13,419 | INFO     | process IDs to be killed: [2843043] (in reverse order)
[2025-06-05 02:18:26] 2025-06-04 17:18:13,461 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:18:26] 2025-06-04 17:18:13,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:18:26] 2025-06-04 17:18:13,469 | INFO     | did not find any defunct processes belonging to 2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:13,478 | INFO     | did not find any defunct processes belonging to 2843043
[2025-06-05 02:18:26] 2025-06-04 17:18:13,478 | INFO     | ready for new job
[2025-06-05 02:18:26] 2025-06-04 17:18:13,478 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:18:26] 2025-06-04 17:18:13,479 | INFO     | **************************************
[2025-06-05 02:18:26] 2025-06-04 17:18:13,479 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:18:26] 2025-06-04 17:18:13,479 | INFO     | **************************************
[2025-06-05 02:18:26] 2025-06-04 17:18:13,479 | INFO     | 
[2025-06-05 02:18:26] 2025-06-04 17:18:13,480 | INFO     | architecture information:
[2025-06-05 02:18:26] 2025-06-04 17:18:13,481 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:18:26] 2025-06-04 17:18:13,493 | INFO     | cat /etc/os-release:
[2025-06-05 02:18:26] NAME="CentOS Linux"
[2025-06-05 02:18:26] VERSION="7 (Core)"
[2025-06-05 02:18:26] ID="centos"
[2025-06-05 02:18:26] ID_LIKE="rhel fedora"
[2025-06-05 02:18:26] VERSION_ID="7"
[2025-06-05 02:18:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:18:26] ANSI_COLOR="0;31"
[2025-06-05 02:18:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:18:26] HOME_URL="https://www.centos.org/"
[2025-06-05 02:18:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:18:26] 
[2025-06-05 02:18:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:18:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:18:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:18:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:18:26] 
[2025-06-05 02:18:26] 2025-06-04 17:18:13,493 | INFO     | **************************************
[2025-06-05 02:18:26] 2025-06-04 17:18:13,507 | INFO     | PID=2836517 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-05 02:18:26] 2025-06-04 17:18:13,507 | INFO     | .. there are 2 such processes running
[2025-06-05 02:18:26] 2025-06-04 17:18:13,995 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-06-05 02:18:26] 2025-06-04 17:18:14,006 | INFO     | sufficient remaining disk space (83106988032 B)
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | INFO     | update_server=False
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:18:26] 2025-06-04 17:18:14,007 | INFO     | aborting loop
[2025-06-05 02:18:26] 2025-06-04 17:18:14,008 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 02:18:26] 2025-06-04 17:18:14,008 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:18:26] 2025-06-04 17:18:14,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:18:26] 2025-06-04 17:18:14,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:18:26] 2025-06-04 17:18:14,016 | INFO     | all job control threads have been joined
[2025-06-05 02:18:26] 2025-06-04 17:18:14,315 | INFO     | all data control threads have been joined
[2025-06-05 02:18:26] 2025-06-04 17:18:14,628 | INFO     | all payload control threads have been joined
[2025-06-05 02:18:26] 2025-06-04 17:18:15,012 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,013 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,013 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,013 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,021 | INFO     | [job] control thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,083 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:18:26] 2025-06-04 17:18:15,320 | INFO     | [data] control thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,631 | INFO     | [payload] control thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:15,883 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:18:26] 2025-06-04 17:18:16,134 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:16,166 | INFO     | [job] validate thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:16,325 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:16,405 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:16,481 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:17,209 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:19,888 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:18:26] 2025-06-04 17:18:20,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311590786880)>', '<ExcThread(monitor, started 140311237994240)>']
[2025-06-05 02:18:26] 2025-06-04 17:18:21,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:18:26] 2025-06-04 17:18:21,040 | INFO     | [monitor] control thread has ended
[2025-06-05 02:18:26] 2025-06-04 17:18:25,930 | INFO     | all workflow threads have been joined
[2025-06-05 02:18:26] 2025-06-04 17:18:25,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:18:26] 2025-06-04 17:18:25,931 | INFO     | traces error code: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:25,931 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:18:26] 2025-06-04 17:18:26,026 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:18:26] 2025-06-04 17:18:26,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:18:26] 2025-06-04 17:18:26,031 [wrapper] pilotpid: 2836517
[2025-06-05 02:18:26] 2025-06-04 17:18:26,033 [wrapper] Pilot exit status: 0
[2025-06-05 02:18:26] 2025-06-04 17:18:26,041 [wrapper] pandaids: 6678390107
[2025-06-05 02:18:26] 2025-06-04 17:18:26,069 [wrapper] cleanup supervisor_pilot 2876639 2836518
[2025-06-05 02:18:26] 2025-06-04 17:18:26,071 [wrapper] Test setup, not cleaning
[2025-06-05 02:18:26] 2025-06-04 17:18:26,073 [wrapper] apfmon messages muted
[2025-06-05 02:18:26] 2025-06-04 17:18:26,075 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:18:26] 2025-06-04 17:18:26,077 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:18:26]  *** Error codes and diagnostics ***
[2025-06-05 02:18:26]     "exeErrorCode": 0,
[2025-06-05 02:18:26]     "exeErrorDiag": "",
[2025-06-05 02:18:26]     "pilotErrorCode": 0,
[2025-06-05 02:18:26]     "pilotErrorDiag": "",
[2025-06-05 02:18:26]  *** Listing of results directory ***
[2025-06-05 02:18:26] total 389740
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc    495897 Jun  4 14:59 pilot3.tar.gz
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc      5111 Jun  4 15:35 queuedata.json
[2025-06-05 02:18:26] -rwx------. 1 boinc boinc     37140 Jun  4 15:39 runpilot2-wrapper.sh
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:18:26] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:51 run_atlas
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:51 job.xml
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc 213960893 Jun  5 00:51 EVNT.45006593._002183.pool.root.1
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:51 start_atlas.sh
[2025-06-05 02:18:26] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:51 shared
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc    508888 Jun  5 00:51 input.tar.gz
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc      9464 Jun  5 00:51 init_data.xml
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:51 boinc_lockfile
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:51 pandaJob.out
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc    990989 Jun  5 00:51 agis_schedconf.cvmfs.json
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc   1598969 Jun  5 00:51 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:18:26] drwx------. 4 boinc boinc      4096 Jun  5 00:51 pilot3
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc 179745955 Jun  5 02:16 HITS.45006595._054558.pool.root.1
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc      1016 Jun  5 02:16 memory_monitor_summary.json
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc    274387 Jun  5 02:16 log.45006595._054558.job.log.tgz.1
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc       529 Jun  5 02:16 boinc_task_state.xml
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc        95 Jun  5 02:17 pilot_heartbeat.json
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc      7667 Jun  5 02:18 heartbeat.json
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc      8192 Jun  5 02:18 boinc_mmap_file
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc        27 Jun  5 02:18 wrapper_checkpoint.txt
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc      4870 Jun  5 02:18 pilotlog.txt
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc    505976 Jun  5 02:18 log.45006595._054558.job.log.1
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc       357 Jun  5 02:18 output.list
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:18 runtime_log
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc    798720 Jun  5 02:18 result.tar.gz
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc       643 Jun  5 02:18 S8SMDmuxwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZZnKDmNoJ8xn.diag
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc      8617 Jun  5 02:18 runtime_log.err
[2025-06-05 02:18:26] -rw-r--r--. 1 boinc boinc     22153 Jun  5 02:18 stderr.txt
[2025-06-05 02:18:26] HITS file was successfully produced:
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc 179745955 Jun  5 02:16 shared/HITS.pool.root.1
[2025-06-05 02:18:26]  *** Contents of shared directory: ***
[2025-06-05 02:18:26] total 385784
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc 213960893 Jun  5 00:51 ATLAS.root_0
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:51 start_atlas.sh
[2025-06-05 02:18:26] -rw-r--r--. 2 boinc boinc    508888 Jun  5 00:51 input.tar.gz
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc 179745955 Jun  5 02:16 HITS.pool.root.1
[2025-06-05 02:18:26] -rw-------. 1 boinc boinc    798720 Jun  5 02:18 result.tar.gz
02:18:27 (2832818): run_atlas exited; CPU time 26146.773057
02:18:27 (2832818): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN