Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:16:32 (34575): wrapper (7.7.26015): starting
07:16:32 (34575): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:16:32] Arguments: --nthreads 8
[2025-06-04 07:16:32] Threads: 8
[2025-06-04 07:16:32] Checking for CVMFS
[2025-06-04 07:16:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:16:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:16:32] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:16:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:16:32] 2.12.6.0 5013 37240 647316 146778 1 205 31787377 32935937 12216 16776704 1 531865406 99.687 415281426 36145 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:16:32] CVMFS is ok
[2025-06-04 07:16:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:16:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:16:32] Further information can be found at the LHC@home message board.
[2025-06-04 07:16:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:16:32] Checking for apptainer binary...
[2025-06-04 07:16:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:16:32] Running /usr/bin/apptainer --version
[2025-06-04 07:16:32] apptainer version 1.4.1-1.el9
[2025-06-04 07:16:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:16:32] c7-9-15.aglt2.org
[2025-06-04 07:16:32] apptainer works
[2025-06-04 07:16:33] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:16:33] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:16:33] Starting ATLAS job with PandaID=6678364714
[2025-06-04 07:16:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:54:21]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:54:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 07:54:21]  is_altstaged=None
[2025-06-04 07:54:21]  is_tar=False
[2025-06-04 07:54:21]  lfn=log.45006595._054198.job.log.tgz.1
[2025-06-04 07:54:21]  mtime=0
[2025-06-04 07:54:21]  protocol_id=None
[2025-06-04 07:54:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:54:21]  replicas=None
[2025-06-04 07:54:21]  scope=mc23_13p6TeV
[2025-06-04 07:54:21]  status=None
[2025-06-04 07:54:21]  status_code=0
[2025-06-04 07:54:21]  storage_token=
[2025-06-04 07:54:21]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6678364714/log.45006595._054198.job.log.tgz.1
[2025-06-04 07:54:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/07/log.45006595._054198.job.log.tgz.1
[2025-06-04 07:54:21]  workdir=None
[2025-06-04 07:54:21] ]
[2025-06-04 07:54:21] 2025-06-04 11:53:54,841 | INFO     | transferring file log.45006595._054198.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6678364714/log.45006595._054198.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 07:54:21] 2025-06-04 11:53:54,841 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6678364714/log.45006595._054198.job.log.tgz.1 /tmp/boinchome/slots/3/log.45006595._054198.job
[2025-06-04 07:54:21] 2025-06-04 11:53:54,854 | INFO     | adding to output.list: log.45006595._054198.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/44/07/log.45006595._054198.job.log.tg
[2025-06-04 07:54:21] 2025-06-04 11:53:54,855 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:54:21] 2025-06-04 11:53:54,855 | INFO     | summary of transferred files:
[2025-06-04 07:54:21] 2025-06-04 11:53:54,855 | INFO     |  -- lfn=log.45006595._054198.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:54:21] 2025-06-04 11:53:54,855 | INFO     | stage-out finished correctly
[2025-06-04 07:54:21] 2025-06-04 11:53:56,104 | INFO     | monitor loop #170: job 0:6678364714 is in state 'finished'
[2025-06-04 07:54:21] 2025-06-04 11:53:56,105 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:54:21] 2025-06-04 11:53:56,293 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:54:21] 2025-06-04 11:53:57,922 | INFO     | job 6678364714 has state=finished
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | preparing for final server update for job 6678364714 in state='finished'
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | job 6678364714 has finished - writing final server update
[2025-06-04 07:54:21] 2025-06-04 11:53:57,923 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:54:21] 2025-06-04 11:53:57,940 | INFO     | executing command: lscpu
[2025-06-04 07:54:21] 2025-06-04 11:53:58,011 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:54:21] 2025-06-04 11:53:58,608 | INFO     | monitor loop #171: job 0:6678364714 is in state 'finished'
[2025-06-04 07:54:21] 2025-06-04 11:53:58,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,210 | INFO     | PID=38690 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,210 | INFO     | .. there are 20 such processes running
[2025-06-04 07:54:21] 2025-06-04 11:54:00,547 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 07:54:21] 2025-06-04 11:54:00,547 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6678364714/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,547 | INFO     | extracted standard info from prmon json
[2025-06-04 07:54:21] 2025-06-04 11:54:00,547 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:54:21] 2025-06-04 11:54:00,548 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:54:21] 2025-06-04 11:54:00,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:54:21] 2025-06-04 11:54:00,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | sum of square deviations: 8362947.5
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | sum of deviations: 1151491662.4999998
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | mean x: 1749037011.5
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | mean y: 2315742.433333333
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | -- intersect: -240822051042.86172
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | intersect: -240822051042.86172
[2025-06-04 07:54:21] 2025-06-04 11:54:00,549 | INFO     | chi2: 0.6196905694074768
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | -- intersect: -240822051042.86172
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | current memory leak: 137.69 B/s (using 30 data points, chi2=0.62)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | ..............................
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . Timing measurements:
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . get job = 0 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . initial setup = 2 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . payload setup = 4 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . stage-in = 0 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . payload execution = 2212 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . stage-out = 0 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | . log creation = 0 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,550 | INFO     | ..............................
[2025-06-04 07:54:21] 2025-06-04 11:54:00,599 | INFO     | 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,599 | INFO     | job summary report
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | --------------------------------------------------
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | PanDA job id: 6678364714
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | task id: 45006595
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | errors: (none)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | pilot state: finished 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | transexitcode: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | exeerrorcode: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | exeerrordiag: 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | exitcode: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | exitmsg: OK
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | cpuconsumptiontime: 13406 s
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | nevents: 400
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | neventsw: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | pid: 45310
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | pgrp: 45310
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | corecount: 8
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | event service: False
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | sizes: {0: 2405184, 3: 2405390, 11: 2405418, 2219: 2430461, 2220: 2439402, 2221: 2439458, 2226: 2439756}
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | --------------------------------------------------
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | 
[2025-06-04 07:54:21] 2025-06-04 11:54:00,600 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,615 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,616 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,616 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:54:21] 2025-06-04 11:54:00,616 | INFO     | job 6678364714 has completed (purged errors)
[2025-06-04 07:54:21] 2025-06-04 11:54:00,616 | INFO     | overall cleanup function is called
[2025-06-04 07:54:21] 2025-06-04 11:54:01,622 | INFO     | --- collectZombieJob: --- 10, [45310]
[2025-06-04 07:54:21] 2025-06-04 11:54:01,623 | INFO     | zombie collector waiting for pid 45310
[2025-06-04 07:54:21] 2025-06-04 11:54:01,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:54:21] 2025-06-04 11:54:01,623 | INFO     | collected zombie processes
[2025-06-04 07:54:21] 2025-06-04 11:54:01,623 | INFO     | will attempt to kill all subprocesses of pid=45310
[2025-06-04 07:54:21] 2025-06-04 11:54:01,814 | INFO     | process IDs to be killed: [45310] (in reverse order)
[2025-06-04 07:54:21] 2025-06-04 11:54:01,899 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:54:21] 2025-06-04 11:54:01,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:54:21] 2025-06-04 11:54:01,913 | INFO     | did not find any defunct processes belonging to 45310
[2025-06-04 07:54:21] 2025-06-04 11:54:01,924 | INFO     | did not find any defunct processes belonging to 45310
[2025-06-04 07:54:21] 2025-06-04 11:54:01,925 | INFO     | ready for new job
[2025-06-04 07:54:21] 2025-06-04 11:54:01,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:54:21] 2025-06-04 11:54:01,925 | INFO     | **************************************
[2025-06-04 07:54:21] 2025-06-04 11:54:01,925 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:54:21] 2025-06-04 11:54:01,925 | INFO     | **************************************
[2025-06-04 07:54:21] 2025-06-04 11:54:01,926 | INFO     | 
[2025-06-04 07:54:21] 2025-06-04 11:54:01,941 | INFO     | architecture information:
[2025-06-04 07:54:21] 2025-06-04 11:54:01,941 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:54:21] 2025-06-04 11:54:01,952 | INFO     | cat /etc/os-release:
[2025-06-04 07:54:21] NAME="CentOS Linux"
[2025-06-04 07:54:21] VERSION="7 (Core)"
[2025-06-04 07:54:21] ID="centos"
[2025-06-04 07:54:21] ID_LIKE="rhel fedora"
[2025-06-04 07:54:21] VERSION_ID="7"
[2025-06-04 07:54:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:54:21] ANSI_COLOR="0;31"
[2025-06-04 07:54:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:54:21] HOME_URL="https://www.centos.org/"
[2025-06-04 07:54:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:54:21] 
[2025-06-04 07:54:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:54:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:54:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:54:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:54:21] 
[2025-06-04 07:54:21] 2025-06-04 11:54:01,952 | INFO     | **************************************
[2025-06-04 07:54:21] 2025-06-04 11:54:02,455 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-06-04 07:54:21] 2025-06-04 11:54:02,470 | INFO     | sufficient remaining disk space (75219599360 B)
[2025-06-04 07:54:21] 2025-06-04 11:54:02,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | INFO     | update_server=False
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:54:21] 2025-06-04 11:54:02,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:54:21] 2025-06-04 11:54:02,472 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:54:21] 2025-06-04 11:54:02,472 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:54:21] 2025-06-04 11:54:02,473 | INFO     | aborting loop
[2025-06-04 07:54:21] 2025-06-04 11:54:02,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:54:21] 2025-06-04 11:54:02,473 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:54:21] 2025-06-04 11:54:02,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:54:21] 2025-06-04 11:54:03,211 | INFO     | all job control threads have been joined
[2025-06-04 07:54:21] 2025-06-04 11:54:03,245 | INFO     | all data control threads have been joined
[2025-06-04 07:54:21] 2025-06-04 11:54:03,476 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,478 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,478 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,555 | INFO     | [job] validate thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,846 | INFO     | all payload control threads have been joined
[2025-06-04 07:54:21] 2025-06-04 11:54:03,874 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,892 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,938 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:03,995 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:04,215 | INFO     | [job] control thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:04,251 | INFO     | [data] control thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:04,361 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:04,851 | INFO     | [payload] control thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:04,926 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:05,008 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:06,478 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:13,364 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:54:21] 2025-06-04 11:54:14,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:54:21] 2025-06-04 11:54:15,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139689285355328)>', '<ExcThread(monitor, started 139688560023296)>']
[2025-06-04 07:54:21] 2025-06-04 11:54:16,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:54:21] 2025-06-04 11:54:16,543 | INFO     | [monitor] control thread has ended
[2025-06-04 07:54:21] 2025-06-04 11:54:20,805 | INFO     | all workflow threads have been joined
[2025-06-04 07:54:21] 2025-06-04 11:54:20,805 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:54:21] 2025-06-04 11:54:20,806 | INFO     | traces error code: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:20,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:54:21] 2025-06-04 11:54:20,886 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:54:21] 2025-06-04 11:54:20,888 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:54:21] 2025-06-04 11:54:20,889 [wrapper] pilotpid: 38690
[2025-06-04 07:54:21] 2025-06-04 11:54:20,891 [wrapper] Pilot exit status: 0
[2025-06-04 07:54:21] 2025-06-04 11:54:20,898 [wrapper] pandaids: 6678364714
[2025-06-04 07:54:21] 2025-06-04 11:54:20,956 [wrapper] cleanup supervisor_pilot  176905 38691
[2025-06-04 07:54:21] 2025-06-04 11:54:20,958 [wrapper] Test setup, not cleaning
[2025-06-04 07:54:21] 2025-06-04 11:54:20,959 [wrapper] apfmon messages muted
[2025-06-04 07:54:21] 2025-06-04 11:54:20,960 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:54:21] 2025-06-04 11:54:20,962 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:54:21]  *** Error codes and diagnostics ***
[2025-06-04 07:54:21]     "exeErrorCode": 0,
[2025-06-04 07:54:21]     "exeErrorDiag": "",
[2025-06-04 07:54:21]     "pilotErrorCode": 0,
[2025-06-04 07:54:21]     "pilotErrorDiag": "",
[2025-06-04 07:54:21]  *** Listing of results directory ***
[2025-06-04 07:54:21] total 384428
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:29 queuedata.json
[2025-06-04 07:54:21] -rwx------. 1 boincer umatlas     37140 Jun  4 02:30 runpilot2-wrapper.sh
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:54:21] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:16 run_atlas
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:16 job.xml
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas 213479454 Jun  4 07:16 EVNT.45006593._002169.pool.root.1
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:16 start_atlas.sh
[2025-06-04 07:54:21] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:16 shared
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 07:16 input.tar.gz
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:16 boinc_lockfile
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:16 pandaJob.out
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas    986812 Jun  4 07:16 agis_schedconf.cvmfs.json
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas   1603667 Jun  4 07:16 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:54:21] drwx------. 4 boincer umatlas      4096 Jun  4 07:16 pilot3
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas      7159 Jun  4 07:49 init_data.xml
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas        95 Jun  4 07:53 pilot_heartbeat.json
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas 175273652 Jun  4 07:53 HITS.45006595._054198.pool.root.1
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas       529 Jun  4 07:53 boinc_task_state.xml
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas      1031 Jun  4 07:53 memory_monitor_summary.json
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas    282610 Jun  4 07:53 log.45006595._054198.job.log.tgz.1
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas      7687 Jun  4 07:54 heartbeat.json
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas        27 Jun  4 07:54 wrapper_checkpoint.txt
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 07:54 boinc_mmap_file
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas      4548 Jun  4 07:54 pilotlog.txt
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas    248355 Jun  4 07:54 log.45006595._054198.job.log.1
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas       357 Jun  4 07:54 output.list
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas       620 Jun  4 07:54 runtime_log
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas    552960 Jun  4 07:54 result.tar.gz
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 07:54 runtime_log.err
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas       648 Jun  4 07:54 6ByMDmyowg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCWnKDmgQfDsm.diag
[2025-06-04 07:54:21] -rw-r--r--. 1 boincer umatlas     21406 Jun  4 07:54 stderr.txt
[2025-06-04 07:54:21] HITS file was successfully produced:
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas 175273652 Jun  4 07:53 shared/HITS.pool.root.1
[2025-06-04 07:54:21]  *** Contents of shared directory: ***
[2025-06-04 07:54:21] total 380712
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas 213479454 Jun  4 07:16 ATLAS.root_0
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:16 start_atlas.sh
[2025-06-04 07:54:21] -rw-r--r--. 2 boincer umatlas    508885 Jun  4 07:16 input.tar.gz
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas 175273652 Jun  4 07:53 HITS.pool.root.1
[2025-06-04 07:54:21] -rw-------. 1 boincer umatlas    552960 Jun  4 07:54 result.tar.gz
07:54:22 (34575): run_atlas exited; CPU time 13438.398958
07:54:22 (34575): called boinc_finish(0)

</stderr_txt>
]]>

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