Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
13:38:07 (1398771): wrapper (7.7.26015): starting
13:38:07 (1398771): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 13:38:07] Arguments: --nthreads 4
[2025-06-04 13:38:07] Threads: 4
[2025-06-04 13:38:07] Checking for CVMFS
[2025-06-04 13:38:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 13:38:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 13:38:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 13:38:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 13:38:07] 2.12.7.0 1381383 6 44236 146778 1 187 9738459 10240001 902 130560 0 49636 99.967 70155 24895 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2025-06-04 13:38:07] CVMFS is ok
[2025-06-04 13:38:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 13:38:07] Checking for apptainer binary...
[2025-06-04 13:38:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 13:38:07] Running /usr/bin/apptainer --version
[2025-06-04 13:38:07] apptainer version 1.3.4
[2025-06-04 13:38:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 13:38:07] peachesvl
[2025-06-04 13:38:07] apptainer works
[2025-06-04 13:38:07] Set ATHENA_PROC_NUMBER=4
[2025-06-04 13:38:07] Set ATHENA_CORE_NUMBER=4
[2025-06-04 13:38:07] Starting ATLAS job with PandaID=6678364713
[2025-06-04 13:38:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 14:59:00]  *** The last 200 lines of the pilot log: ***
[2025-06-04 14:59:00]  lfn=log.45006595._054197.job.log.tgz.1
[2025-06-04 14:59:00]  mtime=0
[2025-06-04 14:59:00]  protocol_id=None
[2025-06-04 14:59:00]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 14:59:00]  replicas=None
[2025-06-04 14:59:00]  scope=mc23_13p6TeV
[2025-06-04 14:59:00]  status=None
[2025-06-04 14:59:00]  status_code=0
[2025-06-04 14:59:00]  storage_token=
[2025-06-04 14:59:00]  surl=/var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6678364713/log.45006595._054197.job.log.tgz.1
[2025-06-04 14:59:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/de/log.45006595._054197.job.log.tgz.1
[2025-06-04 14:59:00]  workdir=None
[2025-06-04 14:59:00] ]
[2025-06-04 14:59:00] 2025-06-04 12:58:25,194 | INFO     | transferring file log.45006595._054197.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6678364713/log.45006595._054197.job.log.tgz.1 to /var/li
[2025-06-04 14:59:00] 2025-06-04 12:58:25,194 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6678364713/log.45006595._054197.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2025-06-04 14:59:00] 2025-06-04 12:58:25,208 | INFO     | adding to output.list: log.45006595._054197.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3c/de/log.45006595._054197.job.log.tg
[2025-06-04 14:59:00] 2025-06-04 12:58:25,209 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 14:59:00] 2025-06-04 12:58:25,209 | INFO     | summary of transferred files:
[2025-06-04 14:59:00] 2025-06-04 12:58:25,209 | INFO     |  -- lfn=log.45006595._054197.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 14:59:00] 2025-06-04 12:58:25,209 | INFO     | stage-out finished correctly
[2025-06-04 14:59:00] 2025-06-04 12:58:25,240 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 14:59:00] 2025-06-04 12:58:25,780 | INFO     | job 6678364713 has state=finished
[2025-06-04 14:59:00] 2025-06-04 12:58:25,780 | INFO     | preparing for final server update for job 6678364713 in state='finished'
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | this job has now completed (state=finished)
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | log transfer has been attempted: DONE
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | job 6678364713 has finished - writing final server update
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | total number of processed events: 400 (read)
[2025-06-04 14:59:00] 2025-06-04 12:58:25,781 | INFO     | executing command: lscpu
[2025-06-04 14:59:00] 2025-06-04 12:58:25,797 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 14:59:00] 2025-06-04 12:58:28,304 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 14:59:00] 2025-06-04 12:58:28,305 | INFO     | found 24 cores (12 cores per socket, 2 sockets) , CPU MHz: 3699.998000000002
[2025-06-04 14:59:00] 2025-06-04 12:58:28,306 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/4/PanDA_Pilot-6678364713/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,307 | INFO     | extracted standard info from prmon json
[2025-06-04 14:59:00] 2025-06-04 12:58:28,307 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 14:59:00] 2025-06-04 12:58:28,307 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 14:59:00] 2025-06-04 12:58:28,307 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 14:59:00] 2025-06-04 12:58:28,307 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | fitting pss+swap vs Time
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | sum of square deviations: 115715658.0
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | sum of deviations: -5616077758.5
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | mean x: 1749039588.5
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | mean y: 2385517.347222222
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | -- intersect: 84889275515.50842
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | intersect: 84889275515.50842
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | chi2: 0.022970842077309036
[2025-06-04 14:59:00] 2025-06-04 12:58:28,308 | INFO     | -- intersect: 84889275515.50842
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | current memory leak: -48.53 B/s (using 72 data points, chi2=0.02)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | could have reported an average CPU frequency of 3699 MHz (6 samples)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | ..............................
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . Timing measurements:
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . get job = 0 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . initial setup = 1 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . payload setup = 5 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . stage-in = 0 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . payload execution = 4786 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . stage-out = 0 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | . log creation = 0 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,309 | INFO     | ..............................
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | 
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | job summary report
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | --------------------------------------------------
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | PanDA job id: 6678364713
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | task id: 45006595
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | errors: (none)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | pilot state: finished 
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | transexitcode: 0
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | exeerrorcode: 0
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | exeerrordiag: 
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | exitcode: 0
[2025-06-04 14:59:00] 2025-06-04 12:58:28,368 | INFO     | exitmsg: OK
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | cpuconsumptiontime: 18136 s
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | nevents: 400
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | neventsw: 0
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | pid: 1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | pgrp: 1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | corecount: 4
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | event service: False
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | sizes: {0: 2397697, 1: 2397697, 3: 2397987, 11: 2398015, 4795: 2433335, 4796: 2433335, 4799: 2433657}
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | --------------------------------------------------
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | 
[2025-06-04 14:59:00] 2025-06-04 12:58:28,369 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/4
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | job 6678364713 has completed (purged errors)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,383 | INFO     | overall cleanup function is called
[2025-06-04 14:59:00] 2025-06-04 12:58:28,567 | WARNING  | process 1409298 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 14:59:00] 2025-06-04 12:58:28,632 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/4/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 14:59:00] 2025-06-04 12:58:28,732 | INFO     | number of running child processes to parent process 1409298: 1
[2025-06-04 14:59:00] 2025-06-04 12:58:28,732 | INFO     | maximum number of monitored processes: 6
[2025-06-04 14:59:00] 2025-06-04 12:58:28,732 | INFO     | aborting job monitoring since job object (job id=6678364713) has expired
[2025-06-04 14:59:00] 2025-06-04 12:58:29,389 | INFO     | --- collectZombieJob: --- 10, [1409298]
[2025-06-04 14:59:00] 2025-06-04 12:58:29,390 | INFO     | zombie collector waiting for pid 1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:29,390 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 14:59:00] 2025-06-04 12:58:29,390 | INFO     | collected zombie processes
[2025-06-04 14:59:00] 2025-06-04 12:58:29,390 | INFO     | will attempt to kill all subprocesses of pid=1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:29,474 | INFO     | process IDs to be killed: [1409298] (in reverse order)
[2025-06-04 14:59:00] 2025-06-04 12:58:29,513 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 14:59:00] 2025-06-04 12:58:29,514 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 14:59:00] 2025-06-04 12:58:29,516 | INFO     | did not find any defunct processes belonging to 1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:29,519 | INFO     | did not find any defunct processes belonging to 1409298
[2025-06-04 14:59:00] 2025-06-04 12:58:29,519 | INFO     | ready for new job
[2025-06-04 14:59:00] 2025-06-04 12:58:29,519 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 14:59:00] 2025-06-04 12:58:29,520 | INFO     | ***************************************
[2025-06-04 14:59:00] 2025-06-04 12:58:29,520 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 14:59:00] 2025-06-04 12:58:29,520 | INFO     | ***************************************
[2025-06-04 14:59:00] 2025-06-04 12:58:29,520 | INFO     | 
[2025-06-04 14:59:00] 2025-06-04 12:58:29,521 | INFO     | pilot is running in a VM
[2025-06-04 14:59:00] 2025-06-04 12:58:29,521 | INFO     | architecture information:
[2025-06-04 14:59:00] 2025-06-04 12:58:29,521 | INFO     | executing command: cat /etc/os-release
[2025-06-04 14:59:00] 2025-06-04 12:58:29,532 | INFO     | cat /etc/os-release:
[2025-06-04 14:59:00] NAME="CentOS Linux"
[2025-06-04 14:59:00] VERSION="7 (Core)"
[2025-06-04 14:59:00] ID="centos"
[2025-06-04 14:59:00] ID_LIKE="rhel fedora"
[2025-06-04 14:59:00] VERSION_ID="7"
[2025-06-04 14:59:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 14:59:00] ANSI_COLOR="0;31"
[2025-06-04 14:59:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 14:59:00] HOME_URL="https://www.centos.org/"
[2025-06-04 14:59:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 14:59:00] 
[2025-06-04 14:59:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 14:59:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 14:59:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 14:59:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 14:59:00] 
[2025-06-04 14:59:00] 2025-06-04 12:58:29,532 | INFO     | ***************************************
[2025-06-04 14:59:00] 2025-06-04 12:58:30,035 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/4
[2025-06-04 14:59:00] 2025-06-04 12:58:30,046 | INFO     | sufficient remaining disk space (24361566208 B)
[2025-06-04 14:59:00] 2025-06-04 12:58:30,046 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 14:59:00] 2025-06-04 12:58:30,046 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 14:59:00] 2025-06-04 12:58:30,046 | INFO     | update_server=False
[2025-06-04 14:59:00] 2025-06-04 12:58:30,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 14:59:00] 2025-06-04 12:58:30,047 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:59:00] 2025-06-04 12:58:30,047 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 14:59:00] 2025-06-04 12:58:30,047 | INFO     | aborting loop
[2025-06-04 14:59:00] 2025-06-04 12:58:30,297 | INFO     | all data control threads have been joined
[2025-06-04 14:59:00] 2025-06-04 12:58:30,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 14:59:00] 2025-06-04 12:58:31,051 | INFO     | [job] queue monitor thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:31,052 | INFO     | [job] job monitor thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:31,052 | INFO     | [job] retrieve thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:31,083 | INFO     | all payload control threads have been joined
[2025-06-04 14:59:00] 2025-06-04 12:58:31,278 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 14:59:00] 2025-06-04 12:58:31,303 | INFO     | [data] control thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:31,318 | INFO     | all job control threads have been joined
[2025-06-04 14:59:00] 2025-06-04 12:58:31,434 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:31,732 | INFO     | [payload] failed_post thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,088 | INFO     | [payload] control thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,088 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,100 | INFO     | [job] validate thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,263 | INFO     | [data] copytool_in thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,299 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,315 | INFO     | [payload] validate_post thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,324 | INFO     | [job] control thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:32,756 | INFO     | [data] copytool_out thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:35,283 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:40,441 | INFO     | job.realtimelogging is not enabled
[2025-06-04 14:59:00] 2025-06-04 12:58:41,447 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 14:59:00] 2025-06-04 12:58:42,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130861042280256)>', '<ExcThread(monitor, started 130860393170688)>']
[2025-06-04 14:59:00] 2025-06-04 12:58:47,811 | INFO     | all workflow threads have been joined
[2025-06-04 14:59:00] 2025-06-04 12:58:47,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 14:59:00] 2025-06-04 12:58:47,812 | INFO     | traces error code: 0
[2025-06-04 14:59:00] 2025-06-04 12:58:47,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 14:59:00] 2025-06-04 12:59:00,604 | INFO     | PID=1402672 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 14:59:00] 2025-06-04 12:59:00,604 | INFO     | .. there are 3 such processes running
[2025-06-04 14:59:00] 2025-06-04 12:59:00,605 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 14:59:00] 2025-06-04 12:59:00,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 14:59:00] 2025-06-04 12:59:00,605 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 14:59:00] 2025-06-04 12:59:00,605 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 14:59:00] 2025-06-04 12:59:00,605 | INFO     | [monitor] control thread has ended
[2025-06-04 14:59:00] 2025-06-04 12:59:00,661 [wrapper] ==== pilot stdout END ====
[2025-06-04 14:59:00] 2025-06-04 12:59:00,663 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 14:59:00] 2025-06-04 12:59:00,665 [wrapper] pilotpid: 1402672
[2025-06-04 14:59:00] 2025-06-04 12:59:00,667 [wrapper] Pilot exit status: 0
[2025-06-04 14:59:00] 2025-06-04 12:59:00,675 [wrapper] pandaids: 6678364713
[2025-06-04 14:59:00] 2025-06-04 12:59:00,700 [wrapper] cleanup supervisor_pilot 1442630 1402673
[2025-06-04 14:59:00] 2025-06-04 12:59:00,702 [wrapper] Test setup, not cleaning
[2025-06-04 14:59:00] 2025-06-04 12:59:00,705 [wrapper] apfmon messages muted
[2025-06-04 14:59:00] 2025-06-04 12:59:00,707 [wrapper] ==== wrapper stdout END ====
[2025-06-04 14:59:00] 2025-06-04 12:59:00,709 [wrapper] ==== wrapper stderr END ====
[2025-06-04 14:59:00]  *** Error codes and diagnostics ***
[2025-06-04 14:59:00]     "exeErrorCode": 0,
[2025-06-04 14:59:00]     "exeErrorDiag": "",
[2025-06-04 14:59:00]     "pilotErrorCode": 0,
[2025-06-04 14:59:00]     "pilotErrorDiag": "",
[2025-06-04 14:59:00]  *** Listing of results directory ***
[2025-06-04 14:59:00] insgesamt 391272
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc    549845 Jun  2 11:40 pilot3.tar.gz
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc      5111 Jun  4 08:29 queuedata.json
[2025-06-04 14:59:00] -rwx------ 1 yeti boinc     37140 Jun  4 08:30 runpilot2-wrapper.sh
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc       100 Jun  4 13:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 14:59:00] -rwxr-xr-x 1 yeti boinc      7986 Jun  4 13:38 run_atlas
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc       105 Jun  4 13:38 job.xml
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc 213479454 Jun  4 13:38 EVNT.45006593._002169.pool.root.1
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc      6708 Jun  4 13:38 init_data.xml
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc     15093 Jun  4 13:38 start_atlas.sh
[2025-06-04 14:59:00] drwxrwx--x 2 yeti boinc      4096 Jun  4 13:38 shared
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc    564122 Jun  4 13:38 input.tar.gz
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc         0 Jun  4 13:38 boinc_lockfile
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc      2525 Jun  4 13:38 pandaJob.out
[2025-06-04 14:59:00] -rw------- 1 yeti boinc    986812 Jun  4 13:38 agis_schedconf.cvmfs.json
[2025-06-04 14:59:00] -rw------- 1 yeti boinc   1598969 Jun  4 13:38 agis_ddmendpoints.agis.ALL.json
[2025-06-04 14:59:00] drwx------ 6 yeti boinc      4096 Jun  4 13:38 pilot3
[2025-06-04 14:59:00] -rw------- 1 yeti boinc 181724224 Jun  4 14:58 HITS.45006595._054197.pool.root.1
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc       529 Jun  4 14:58 boinc_task_state.xml
[2025-06-04 14:59:00] -rw------- 1 yeti boinc      1017 Jun  4 14:58 memory_monitor_summary.json
[2025-06-04 14:59:00] -rw------- 1 yeti boinc    245333 Jun  4 14:58 log.45006595._054197.job.log.tgz.1
[2025-06-04 14:59:00] -rw------- 1 yeti boinc      7657 Jun  4 14:58 heartbeat.json
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc      8192 Jun  4 14:58 boinc_mmap_file
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc        27 Jun  4 14:59 wrapper_checkpoint.txt
[2025-06-04 14:59:00] -rw------- 1 yeti boinc       822 Jun  4 14:59 pilotlog.txt
[2025-06-04 14:59:00] -rw------- 1 yeti boinc        95 Jun  4 14:59 pilot_heartbeat.json
[2025-06-04 14:59:00] -rw------- 1 yeti boinc    516966 Jun  4 14:59 log.45006595._054197.job.log.1
[2025-06-04 14:59:00] -rw------- 1 yeti boinc       357 Jun  4 14:59 output.list
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc       620 Jun  4 14:59 runtime_log
[2025-06-04 14:59:00] -rw------- 1 yeti boinc    778240 Jun  4 14:59 result.tar.gz
[2025-06-04 14:59:00] -rw------- 1 yeti boinc       641 Jun  4 14:59 ukwMDmyowg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBWnKDmXXMo5m.diag
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc      8833 Jun  4 14:59 runtime_log.err
[2025-06-04 14:59:00] -rw-r--r-- 1 yeti boinc     21342 Jun  4 14:59 stderr.txt
[2025-06-04 14:59:00] HITS file was successfully produced:
[2025-06-04 14:59:00] -rw------- 1 yeti boinc 181724224 Jun  4 14:58 shared/HITS.pool.root.1
[2025-06-04 14:59:00]  *** Contents of shared directory: ***
[2025-06-04 14:59:00] insgesamt 387284
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc 213479454 Jun  4 13:38 ATLAS.root_0
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc     15093 Jun  4 13:38 start_atlas.sh
[2025-06-04 14:59:00] -rw-r--r-- 2 yeti boinc    564122 Jun  4 13:38 input.tar.gz
[2025-06-04 14:59:00] -rw------- 1 yeti boinc 181724224 Jun  4 14:58 HITS.pool.root.1
[2025-06-04 14:59:00] -rw------- 1 yeti boinc    778240 Jun  4 14:59 result.tar.gz
14:59:02 (1398771): run_atlas exited; CPU time 18133.637161
14:59:02 (1398771): called boinc_finish(0)

</stderr_txt>
]]>

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