Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-04 13:22:06 (2651718): Detected: vboxwrapper 26206
2025-06-04 13:22:06 (2651718): Detected: BOINC client v8.2.2
2025-06-04 13:22:06 (2651718): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-06-04 13:22:06 (2651718): Successfully copied 'init_data.xml' to the shared directory.
2025-06-04 13:22:06 (2651718): Create VM. (boinc_0d646d30d3bb3415, slot#7)
2025-06-04 13:22:06 (2651718): Setting Memory Size for VM. (4096MB)
2025-06-04 13:22:06 (2651718): Setting CPU Count for VM. (1)
2025-06-04 13:22:07 (2651718): Setting Chipset Options for VM.
2025-06-04 13:22:07 (2651718): Setting Graphics Controller Options for VM.
2025-06-04 13:22:07 (2651718): Setting Boot Options for VM.
2025-06-04 13:22:07 (2651718): Setting Network Configuration for NAT.
2025-06-04 13:22:07 (2651718): Enabling VM Network Access.
2025-06-04 13:22:07 (2651718): Disabling USB Support for VM.
2025-06-04 13:22:07 (2651718): Disabling COM Port Support for VM.
2025-06-04 13:22:07 (2651718): Disabling LPT Port Support for VM.
2025-06-04 13:22:07 (2651718): Disabling Audio Support for VM.
2025-06-04 13:22:07 (2651718): Disabling Clipboard Support for VM.
2025-06-04 13:22:07 (2651718): Disabling Drag and Drop Support for VM.
2025-06-04 13:22:08 (2651718): Adding storage controller(s) to VM.
2025-06-04 13:22:08 (2651718): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-04 13:22:08 (2651718): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-04 13:22:08 (2651718): forwarding host port 54445 to guest port 80
2025-06-04 13:22:08 (2651718): Enabling remote desktop for VM.
2025-06-04 13:22:08 (2651718): Enabling shared directory for VM.
2025-06-04 13:22:09 (2651718): Starting VM using VBoxManage interface. (boinc_0d646d30d3bb3415, slot#7)
2025-06-04 13:22:10 (2651718): Successfully started VM. (PID = '2652107')
2025-06-04 13:22:10 (2651718): Reporting VM Process ID to BOINC.
2025-06-04 13:22:10 (2651718): Guest Log: BIOS: VirtualBox 7.0.20
2025-06-04 13:22:10 (2651718): Guest Log: CPUID EDX: 0x178bfbff
2025-06-04 13:22:10 (2651718): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-04 13:22:10 (2651718): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-04 13:22:10 (2651718): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-04 13:22:10 (2651718): Detected: Web Application Enabled (http://localhost:54445)
2025-06-04 13:22:10 (2651718): Detected: Remote Desktop Enabled (localhost:41861)
2025-06-04 13:22:10 (2651718): Preference change detected
2025-06-04 13:22:10 (2651718): Setting CPU throttle for VM. (100%)
2025-06-04 13:22:10 (2651718): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-04 13:22:12 (2651718): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-04 13:22:12 (2651718): Guest Log: BIOS: Booting from Hard Disk...
2025-06-04 13:22:15 (2651718): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-04 13:22:15 (2651718): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-04 13:22:15 (2651718): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-04 13:22:21 (2651718): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-04 13:22:21 (2651718): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-04 13:22:34 (2651718): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000258 main     Log opened 2025-06-04T11:22:32.770673000Z
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000485 main     OS Product: Linux
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000545 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000591 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000636 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000637 main     Process ID: 1237
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.000638 main     Package type: LINUX_64BITS_GENERIC
2025-06-04 13:22:34 (2651718): Guest Log: 00:00:00.003682 main     5.2.32 r132073 started. Verbose level = 0
2025-06-04 13:22:34 (2651718): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-04 13:22:34 (2651718): Guest Log: [INFO] Mounting shared directory
2025-06-04 13:22:34 (2651718): Guest Log: [INFO] Checking for init_data.xml
2025-06-04 13:22:41 (2651718): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-04 13:22:41 (2651718): Guest Log: [INFO] Detected branch: prod
2025-06-04 13:22:41 (2651718): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-04 13:22:41 (2651718): Guest Log: Copying input files
2025-06-04 13:22:42 (2651718): Guest Log: Copied input files into RunAtlas.
2025-06-04 13:22:42 (2651718): Guest Log: Detected user-configured HTTP proxy at http://localhost:3128 - will set in /etc/cvmfs/default.local
2025-06-04 13:23:14 (2651718): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-04 13:23:14 (2651718): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-04 13:23:14 (2651718): Guest Log: 2.6.3.0 1510 0 31544 146778 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-06-04 13:23:15 (2651718): Guest Log: copied the webapp to /var/www
2025-06-04 13:23:15 (2651718): Guest Log: core_number=1
2025-06-04 13:23:15 (2651718): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-04 13:23:15 (2651718): Guest Log:  *** Starting ATLAS job. (PandaID=6678365385 taskID=45006595) ***
2025-06-04 15:01:10 (2651718): Status Report: Elapsed Time: '6000.000000'
2025-06-04 15:01:10 (2651718): Status Report: CPU Time: '5344.200000'
2025-06-04 16:40:11 (2651718): Status Report: Elapsed Time: '12000.000000'
2025-06-04 16:40:11 (2651718): Status Report: CPU Time: '11293.390000'
2025-06-04 18:19:12 (2651718): Status Report: Elapsed Time: '18000.000000'
2025-06-04 18:19:12 (2651718): Status Report: CPU Time: '17244.180000'
2025-06-04 19:58:12 (2651718): Status Report: Elapsed Time: '24000.000000'
2025-06-04 19:58:12 (2651718): Status Report: CPU Time: '23193.490000'
2025-06-04 21:37:13 (2651718): Status Report: Elapsed Time: '30000.000000'
2025-06-04 21:37:13 (2651718): Status Report: CPU Time: '29141.930000'
2025-06-04 22:21:57 (2651718): Guest Log:  *** Job finished ***
2025-06-04 22:21:57 (2651718): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:32,207 | INFO     | [data] queue_monitor thread has finished
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:35,823 | INFO     | job.realtimelogging is not enabled
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:36,825 | INFO     | [payload] run_realtimelog thread has finished
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:37,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140713889146688)>', '<ExcThread(monitor, started 140713438201600)>']
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:38,696 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:38,697 | INFO     | [monitor] control thread has ended
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:42,893 | INFO     | all workflow threads have been joined
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:42,893 | INFO     | end of generic workflow (traces error code: 0)
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:42,894 | INFO     | traces error code: 0
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:42,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:43,014 [wrapper] ==== pilot stdout END ====
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:43,019 [wrapper] ==== wrapper stdout RESUME ====
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:43,025 [wrapper] pilotpid: 5787
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:43,030 [wrapper] Pilot exit status: 0
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,633 [wrapper] pandaids: 6678365385
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,663 [wrapper] cleanup supervisor_pilot  9893 5788
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,669 [wrapper] Test setup, not cleaning
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,674 [wrapper] apfmon messages muted
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,679 [wrapper] ==== wrapper stdout END ====
2025-06-04 22:21:57 (2651718): Guest Log: 2025-06-04 20:21:56,684 [wrapper] ==== wrapper stderr END ====
2025-06-04 22:21:57 (2651718): Guest Log:  *** Error codes and diagnostics ***
2025-06-04 22:21:57 (2651718): Guest Log:     "exeErrorCode": 0,
2025-06-04 22:21:57 (2651718): Guest Log:     "exeErrorDiag": "",
2025-06-04 22:21:57 (2651718): Guest Log:     "pilotErrorCode": 0,
2025-06-04 22:21:57 (2651718): Guest Log:     "pilotErrorDiag": "",
2025-06-04 22:21:57 (2651718): Guest Log:  *** Listing of results directory ***
2025-06-04 22:21:57 (2651718): Guest Log: total 189720
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas    495897 Jun  4 05:59 pilot3.tar.gz
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Jun  4 06:35 queuedata.json
2025-06-04 22:21:57 (2651718): Guest Log: -rwx------. 1 atlas atlas     37140 Jun  4 06:36 runpilot2-wrapper.sh
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas      9817 Jun  4 11:22 init_data.xml
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas    508882 Jun  4 11:22 input.tar.gz
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas     15093 Jun  4 11:22 start_atlas.sh
2025-06-04 22:21:57 (2651718): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  4 11:22 EVNT.45006593._002178.pool.root.1 -> /data/./ATLAS.root_0
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas      2525 Jun  4 11:23 pandaJob.out
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas    986812 Jun  4 11:24 agis_schedconf.cvmfs.json
2025-06-04 22:21:57 (2651718): Guest Log: drwx------. 4 atlas atlas      4096 Jun  4 11:24 pilot3
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas 184011913 Jun  4 20:20 HITS.45006595._054416.pool.root.1
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas        95 Jun  4 20:21 pilot_heartbeat.json
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas      1021 Jun  4 20:21 memory_monitor_summary.json
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas   1598969 Jun  4 20:21 agis_ddmendpoints.agis.ALL.json
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas    447525 Jun  4 20:21 log.45006595._054416.job.log.tgz.1
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas      7708 Jun  4 20:21 heartbeat.json
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas      4608 Jun  4 20:21 pilotlog.txt
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas   2798185 Jun  4 20:21 log.45006595._054416.job.log.1
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas       357 Jun  4 20:21 output.list
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  4 20:21 runtime_log
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas   3266560 Jun  4 20:21 result.tar.gz
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas       657 Jun  4 20:21 ujnLDmouwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmBYnKDmOQJHBo.diag
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 atlas atlas      8472 Jun  4 20:21 runtime_log.err
2025-06-04 22:21:57 (2651718): Guest Log: Looking for outputfile HITS.45006595._054416.pool.root.1
2025-06-04 22:21:57 (2651718): Guest Log: HITS file was successfully produced
2025-06-04 22:21:57 (2651718): Guest Log: -rw-------. 1 atlas atlas 184011913 Jun  4 20:20 /home/atlas/RunAtlas/HITS.45006595._054416.pool.root.1
2025-06-04 22:21:57 (2651718): Guest Log: Successfully finished the ATLAS job!
2025-06-04 22:21:57 (2651718): Guest Log: Copying the results back to the shared directory!
2025-06-04 22:21:57 (2651718): Guest Log:  *** Contents of shared directory: ***
2025-06-04 22:21:57 (2651718): Guest Log: total 214984
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 root root 216328110 Jun  4 11:22 ATLAS.root_0
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 root root      9817 Jun  4 11:22 init_data.xml
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 root root    508882 Jun  4 11:22 input.tar.gz
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 root root   3266560 Jun  4 20:21 result.tar.gz
2025-06-04 22:21:57 (2651718): Guest Log: -rw-r--r--. 1 root root     15093 Jun  4 11:22 start_atlas.sh
2025-06-04 22:21:57 (2651718): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-04 22:21:57 (2651718): VM Completion File Detected.
2025-06-04 22:21:57 (2651718): Powering off VM.
2025-06-04 22:21:58 (2651718): Successfully stopped VM.
2025-06-04 22:21:58 (2651718): Deregistering VM. (boinc_0d646d30d3bb3415, slot#7)
2025-06-04 22:21:58 (2651718): Removing network bandwidth throttle group from VM.
2025-06-04 22:21:58 (2651718): Removing VM from VirtualBox.
22:22:03 (2651718): called boinc_finish(0)

</stderr_txt>
]]>

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