Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:36:55 (1525504): wrapper (7.7.26015): starting
07:36:55 (1525504): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:36:55] Arguments: --nthreads 8
[2025-06-04 07:36:55] Threads: 8
[2025-06-04 07:36:55] Checking for CVMFS
[2025-06-04 07:36:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:36:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:36:55] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:36:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:36:55] 2.12.6.0 311205 23241 533716 146779 1 66 31904135 40960001 13852 16776704 1 126199204 99.726 88339150 24931 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:36:55] CVMFS is ok
[2025-06-04 07:36:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:36:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:36:55] Further information can be found at the LHC@home message board.
[2025-06-04 07:36:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:36:55] Checking for apptainer binary...
[2025-06-04 07:36:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:36:55] Running /usr/bin/apptainer --version
[2025-06-04 07:36:55] apptainer version 1.4.1-1.el9
[2025-06-04 07:36:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:36:55] c7-10-13.aglt2.org
[2025-06-04 07:36:55] apptainer works
[2025-06-04 07:36:55] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:36:55] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:36:55] Starting ATLAS job with PandaID=6678285607
[2025-06-04 07:36:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:40:23]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:40:23]  domain=
[2025-06-04 08:40:23]  filesize=296994
[2025-06-04 08:40:23]  filetype=log
[2025-06-04 08:40:23]  guid=c1231d2a-3d72-4627-ab17-f5adf0b39a4f
[2025-06-04 08:40:23]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 08:40:23]  is_altstaged=None
[2025-06-04 08:40:23]  is_tar=False
[2025-06-04 08:40:23]  lfn=log.45006595._050816.job.log.tgz.1
[2025-06-04 08:40:23]  mtime=0
[2025-06-04 08:40:23]  protocol_id=None
[2025-06-04 08:40:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:40:23]  replicas=None
[2025-06-04 08:40:23]  scope=mc23_13p6TeV
[2025-06-04 08:40:23]  status=None
[2025-06-04 08:40:23]  status_code=0
[2025-06-04 08:40:23]  storage_token=
[2025-06-04 08:40:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678285607/log.45006595._050816.job.log.tgz.1
[2025-06-04 08:40:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/3f/log.45006595._050816.job.log.tgz.1
[2025-06-04 08:40:23]  workdir=None
[2025-06-04 08:40:23] ]
[2025-06-04 08:40:23] 2025-06-04 12:40:05,206 | INFO     | transferring file log.45006595._050816.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678285607/log.45006595._050816.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:40:23] 2025-06-04 12:40:05,206 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678285607/log.45006595._050816.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._050816.job
[2025-06-04 08:40:23] 2025-06-04 12:40:05,229 | INFO     | adding to output.list: log.45006595._050816.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/3f/log.45006595._050816.job.log.tg
[2025-06-04 08:40:23] 2025-06-04 12:40:05,230 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:40:23] 2025-06-04 12:40:05,230 | INFO     | summary of transferred files:
[2025-06-04 08:40:23] 2025-06-04 12:40:05,230 | INFO     |  -- lfn=log.45006595._050816.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:40:23] 2025-06-04 12:40:05,230 | INFO     | stage-out finished correctly
[2025-06-04 08:40:23] 2025-06-04 12:40:07,037 | INFO     | monitor loop #283: job 0:6678285607 is in state 'finished'
[2025-06-04 08:40:23] 2025-06-04 12:40:07,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:40:23] 2025-06-04 12:40:07,252 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:40:23] 2025-06-04 12:40:07,325 | INFO     | job 6678285607 has state=finished
[2025-06-04 08:40:23] 2025-06-04 12:40:07,326 | INFO     | preparing for final server update for job 6678285607 in state='finished'
[2025-06-04 08:40:23] 2025-06-04 12:40:07,326 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:40:23] 2025-06-04 12:40:07,326 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:40:23] 2025-06-04 12:40:07,326 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:40:23] 2025-06-04 12:40:07,327 | INFO     | job 6678285607 has finished - writing final server update
[2025-06-04 08:40:23] 2025-06-04 12:40:07,327 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:40:23] 2025-06-04 12:40:07,343 | INFO     | executing command: lscpu
[2025-06-04 08:40:23] 2025-06-04 12:40:07,402 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:40:23] 2025-06-04 12:40:09,540 | INFO     | monitor loop #284: job 0:6678285607 is in state 'finished'
[2025-06-04 08:40:23] 2025-06-04 12:40:09,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,025 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 08:40:23] 2025-06-04 12:40:11,025 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678285607/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,026 | INFO     | extracted standard info from prmon json
[2025-06-04 08:40:23] 2025-06-04 12:40:11,026 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:40:23] 2025-06-04 12:40:11,026 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:40:23] 2025-06-04 12:40:11,026 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:40:23] 2025-06-04 12:40:11,026 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | sum of square deviations: 51573060.0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | sum of deviations: -1115965048.9999998
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | mean x: 1749039004.0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | mean y: 2404014.8
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | -- intersect: 37849031649.49476
[2025-06-04 08:40:23] 2025-06-04 12:40:11,028 | INFO     | intersect: 37849031649.49476
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | chi2: 0.6984522477931087
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | -- intersect: 37849031649.49476
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | current memory leak: -21.64 B/s (using 55 data points, chi2=0.70)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | ..............................
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . Timing measurements:
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . get job = 0 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . initial setup = 2 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . payload setup = 5 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . stage-in = 0 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . payload execution = 3753 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . stage-out = 0 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | . log creation = 0 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,029 | INFO     | ..............................
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | 
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | job summary report
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | --------------------------------------------------
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | PanDA job id: 6678285607
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | task id: 45006595
[2025-06-04 08:40:23] 2025-06-04 12:40:11,094 | INFO     | errors: (none)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | pilot state: finished 
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | transexitcode: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | exeerrorcode: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | exeerrordiag: 
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | exitcode: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | exitmsg: OK
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | cpuconsumptiontime: 24745 s
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | nevents: 400
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | neventsw: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | pid: 1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:11,095 | INFO     | pgrp: 1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | corecount: 8
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | event service: False
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | sizes: {0: 2397341, 4: 2397547, 11: 2397575, 3762: 2423373, 3763: 2432314, 3765: 2432370, 3769: 2432668}
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | --------------------------------------------------
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | 
[2025-06-04 08:40:23] 2025-06-04 12:40:11,096 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:40:23] 2025-06-04 12:40:11,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,115 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | job 6678285607 has completed (purged errors)
[2025-06-04 08:40:23] 2025-06-04 12:40:11,116 | INFO     | overall cleanup function is called
[2025-06-04 08:40:23] 2025-06-04 12:40:12,125 | INFO     | --- collectZombieJob: --- 10, [1535511]
[2025-06-04 08:40:23] 2025-06-04 12:40:12,125 | INFO     | zombie collector waiting for pid 1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:12,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:40:23] 2025-06-04 12:40:12,125 | INFO     | collected zombie processes
[2025-06-04 08:40:23] 2025-06-04 12:40:12,125 | INFO     | will attempt to kill all subprocesses of pid=1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:12,400 | INFO     | process IDs to be killed: [1535511] (in reverse order)
[2025-06-04 08:40:23] 2025-06-04 12:40:12,510 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:40:23] 2025-06-04 12:40:12,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:40:23] 2025-06-04 12:40:12,525 | INFO     | did not find any defunct processes belonging to 1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:12,539 | INFO     | did not find any defunct processes belonging to 1535511
[2025-06-04 08:40:23] 2025-06-04 12:40:12,539 | INFO     | ready for new job
[2025-06-04 08:40:23] 2025-06-04 12:40:12,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:40:23] 2025-06-04 12:40:12,541 | INFO     | **************************************
[2025-06-04 08:40:23] 2025-06-04 12:40:12,541 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:40:23] 2025-06-04 12:40:12,541 | INFO     | **************************************
[2025-06-04 08:40:23] 2025-06-04 12:40:12,541 | INFO     | 
[2025-06-04 08:40:23] 2025-06-04 12:40:12,556 | INFO     | architecture information:
[2025-06-04 08:40:23] 2025-06-04 12:40:12,556 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:40:23] 2025-06-04 12:40:12,577 | INFO     | cat /etc/os-release:
[2025-06-04 08:40:23] NAME="CentOS Linux"
[2025-06-04 08:40:23] VERSION="7 (Core)"
[2025-06-04 08:40:23] ID="centos"
[2025-06-04 08:40:23] ID_LIKE="rhel fedora"
[2025-06-04 08:40:23] VERSION_ID="7"
[2025-06-04 08:40:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:40:23] ANSI_COLOR="0;31"
[2025-06-04 08:40:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:40:23] HOME_URL="https://www.centos.org/"
[2025-06-04 08:40:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:40:23] 
[2025-06-04 08:40:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:40:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:40:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:40:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:40:23] 
[2025-06-04 08:40:23] 2025-06-04 12:40:12,578 | INFO     | **************************************
[2025-06-04 08:40:23] 2025-06-04 12:40:13,081 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:40:23] 2025-06-04 12:40:13,099 | INFO     | sufficient remaining disk space (85977989120 B)
[2025-06-04 08:40:23] 2025-06-04 12:40:13,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:40:23] 2025-06-04 12:40:13,100 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:40:23] 2025-06-04 12:40:13,100 | INFO     | update_server=False
[2025-06-04 08:40:23] 2025-06-04 12:40:13,100 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:40:23] 2025-06-04 12:40:13,100 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:23] 2025-06-04 12:40:13,101 | INFO     | aborting loop
[2025-06-04 08:40:23] 2025-06-04 12:40:13,179 | INFO     | all data control threads have been joined
[2025-06-04 08:40:23] 2025-06-04 12:40:13,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:40:23] 2025-06-04 12:40:13,331 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:40:23] 2025-06-04 12:40:13,488 | INFO     | all job control threads have been joined
[2025-06-04 08:40:23] 2025-06-04 12:40:13,689 | INFO     | all payload control threads have been joined
[2025-06-04 08:40:23] 2025-06-04 12:40:13,704 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:40:23] 2025-06-04 12:40:13,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:40:23] 2025-06-04 12:40:13,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:40:23] 2025-06-04 12:40:14,105 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,106 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,125 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,166 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,185 | INFO     | [data] control thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,493 | INFO     | [job] control thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,500 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,695 | INFO     | [payload] control thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,698 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,721 | INFO     | [job] validate thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:14,814 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:15,064 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:15,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:15,327 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:16,102 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:40:23] 2025-06-04 12:40:17,107 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:17,338 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:40:23] 2025-06-04 12:40:17,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140207436990272)>', '<ExcThread(monitor, started 140207085037312)>']
[2025-06-04 08:40:23] 2025-06-04 12:40:18,721 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:40:23] 2025-06-04 12:40:18,722 | INFO     | [monitor] control thread has ended
[2025-06-04 08:40:23] 2025-06-04 12:40:22,849 | INFO     | all workflow threads have been joined
[2025-06-04 08:40:23] 2025-06-04 12:40:22,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:40:23] 2025-06-04 12:40:22,850 | INFO     | traces error code: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:22,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:40:23] 2025-06-04 12:40:22,967 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:40:23] 2025-06-04 12:40:22,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:40:23] 2025-06-04 12:40:22,971 [wrapper] pilotpid: 1529094
[2025-06-04 08:40:23] 2025-06-04 12:40:22,975 [wrapper] Pilot exit status: 0
[2025-06-04 08:40:23] 2025-06-04 12:40:22,987 [wrapper] pandaids: 6678285607
[2025-06-04 08:40:23] 2025-06-04 12:40:23,068 [wrapper] cleanup supervisor_pilot 1715225 1529095
[2025-06-04 08:40:23] 2025-06-04 12:40:23,072 [wrapper] Test setup, not cleaning
[2025-06-04 08:40:23] 2025-06-04 12:40:23,075 [wrapper] apfmon messages muted
[2025-06-04 08:40:23] 2025-06-04 12:40:23,078 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:40:23] 2025-06-04 12:40:23,082 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:40:23]  *** Error codes and diagnostics ***
[2025-06-04 08:40:23]     "exeErrorCode": 0,
[2025-06-04 08:40:23]     "exeErrorDiag": "",
[2025-06-04 08:40:23]     "pilotErrorCode": 0,
[2025-06-04 08:40:23]     "pilotErrorDiag": "",
[2025-06-04 08:40:23]  *** Listing of results directory ***
[2025-06-04 08:40:23] total 386356
[2025-06-04 08:40:23] -rwx------. 1 boincer umatlas     37140 Jun  3 22:52 runpilot2-wrapper.sh
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 22:52 queuedata.json
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas    495897 Jun  3 22:52 pilot3.tar.gz
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:40:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:36 run_atlas
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:36 job.xml
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas 215727196 Jun  4 07:36 EVNT.45006593._002036.pool.root.1
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:36 start_atlas.sh
[2025-06-04 08:40:23] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:36 shared
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas    508867 Jun  4 07:36 input.tar.gz
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:36 boinc_lockfile
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas      2524 Jun  4 07:36 pandaJob.out
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas    986812 Jun  4 07:37 agis_schedconf.cvmfs.json
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas   1598969 Jun  4 07:37 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:40:23] drwx------. 4 boincer umatlas      4096 Jun  4 07:37 pilot3
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas        95 Jun  4 08:39 pilot_heartbeat.json
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas 174710889 Jun  4 08:39 HITS.45006595._050816.pool.root.1
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas       529 Jun  4 08:39 boinc_task_state.xml
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas      6897 Jun  4 08:39 init_data.xml
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas      1023 Jun  4 08:40 memory_monitor_summary.json
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas    296994 Jun  4 08:40 log.45006595._050816.job.log.tgz.1
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas      7683 Jun  4 08:40 heartbeat.json
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas        27 Jun  4 08:40 wrapper_checkpoint.txt
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:40 boinc_mmap_file
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas      4353 Jun  4 08:40 pilotlog.txt
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas    382747 Jun  4 08:40 log.45006595._050816.job.log.1
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas       357 Jun  4 08:40 output.list
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:40 runtime_log
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas    696320 Jun  4 08:40 result.tar.gz
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 08:40 runtime_log.err
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas       651 Jun  4 08:40 rEVKDmPQtg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmvmKDm3XyKpm.diag
[2025-06-04 08:40:23] -rw-r--r--. 1 boincer umatlas     21030 Jun  4 08:40 stderr.txt
[2025-06-04 08:40:23] HITS file was successfully produced:
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas 174710889 Jun  4 08:39 shared/HITS.pool.root.1
[2025-06-04 08:40:23]  *** Contents of shared directory: ***
[2025-06-04 08:40:23] total 382496
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas 215727196 Jun  4 07:36 ATLAS.root_0
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:36 start_atlas.sh
[2025-06-04 08:40:23] -rw-r--r--. 2 boincer umatlas    508867 Jun  4 07:36 input.tar.gz
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas 174710889 Jun  4 08:39 HITS.pool.root.1
[2025-06-04 08:40:23] -rw-------. 1 boincer umatlas    696320 Jun  4 08:40 result.tar.gz
08:40:25 (1525504): run_atlas exited; CPU time 24733.426722
08:40:25 (1525504): called boinc_finish(0)

</stderr_txt>
]]>

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