Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:05:01 (9016): wrapper (7.7.26015): starting
07:05:01 (9016): wrapper: running run_atlas (--nthreads 12)
[2025-06-04 07:05:01] Arguments: --nthreads 12
[2025-06-04 07:05:01] Threads: 12
[2025-06-04 07:05:01] Checking for CVMFS
[2025-06-04 07:05:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:05:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:05:01] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:05:02] 2.11.2.0 2933 35599 87076 146777 2 58 18562367 20275200 1 130560 0 15915575 99.983 6219033 7625 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:05:02] CVMFS is ok
[2025-06-04 07:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:05:02] Further information can be found at the LHC@home message board.
[2025-06-04 07:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:05:02] Checking for apptainer binary...
[2025-06-04 07:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:05:02] Running /usr/bin/apptainer --version
[2025-06-04 07:05:02] apptainer version 1.3.2-1.el7
[2025-06-04 07:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:05:03] c-205-15.aglt2.org
[2025-06-04 07:05:03] apptainer works
[2025-06-04 07:05:03] Set ATHENA_PROC_NUMBER=12
[2025-06-04 07:05:03] Set ATHENA_CORE_NUMBER=12
[2025-06-04 07:05:03] Starting ATLAS job with PandaID=6678364647
[2025-06-04 07:05:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:10:07]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:10:07]  lfn=log.45006595._054131.job.log.tgz.1
[2025-06-04 08:10:07]  mtime=0
[2025-06-04 08:10:07]  protocol_id=None
[2025-06-04 08:10:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:10:07]  replicas=None
[2025-06-04 08:10:07]  scope=mc23_13p6TeV
[2025-06-04 08:10:07]  status=None
[2025-06-04 08:10:07]  status_code=0
[2025-06-04 08:10:07]  storage_token=
[2025-06-04 08:10:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678364647/log.45006595._054131.job.log.tgz.1
[2025-06-04 08:10:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/3f/log.45006595._054131.job.log.tgz.1
[2025-06-04 08:10:07]  workdir=None
[2025-06-04 08:10:07] ]
[2025-06-04 08:10:07] 2025-06-04 12:09:37,871 | INFO     | transferring file log.45006595._054131.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678364647/log.45006595._054131.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:10:07] 2025-06-04 12:09:37,871 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678364647/log.45006595._054131.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._054131.job
[2025-06-04 08:10:07] 2025-06-04 12:09:37,892 | INFO     | adding to output.list: log.45006595._054131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/84/3f/log.45006595._054131.job.log.tg
[2025-06-04 08:10:07] 2025-06-04 12:09:37,893 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:10:07] 2025-06-04 12:09:37,893 | INFO     | summary of transferred files:
[2025-06-04 08:10:07] 2025-06-04 12:09:37,893 | INFO     |  -- lfn=log.45006595._054131.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:10:07] 2025-06-04 12:09:37,894 | INFO     | stage-out finished correctly
[2025-06-04 08:10:07] 2025-06-04 12:09:38,869 | INFO     | monitor loop #288: job 0:6678364647 is in state 'finished'
[2025-06-04 08:10:07] 2025-06-04 12:09:38,869 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:10:07] 2025-06-04 12:09:40,077 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:10:07] 2025-06-04 12:09:41,372 | INFO     | monitor loop #289: job 0:6678364647 is in state 'finished'
[2025-06-04 08:10:07] 2025-06-04 12:09:41,372 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:10:07] 2025-06-04 12:09:42,338 | INFO     | job 6678364647 has state=finished
[2025-06-04 08:10:07] 2025-06-04 12:09:42,338 | INFO     | preparing for final server update for job 6678364647 in state='finished'
[2025-06-04 08:10:07] 2025-06-04 12:09:42,339 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:10:07] 2025-06-04 12:09:42,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:10:07] 2025-06-04 12:09:42,339 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:10:07] 2025-06-04 12:09:42,339 | INFO     | job 6678364647 has finished - writing final server update
[2025-06-04 08:10:07] 2025-06-04 12:09:42,340 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:10:07] 2025-06-04 12:09:42,343 | INFO     | executing command: lscpu
[2025-06-04 08:10:07] 2025-06-04 12:09:42,390 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:10:07] 2025-06-04 12:09:43,886 | INFO     | monitor loop #290: job 0:6678364647 is in state 'finished'
[2025-06-04 08:10:07] 2025-06-04 12:09:43,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:10:07] 2025-06-04 12:09:46,389 | INFO     | monitor loop #291: job 0:6678364647 is in state 'finished'
[2025-06-04 08:10:07] 2025-06-04 12:09:46,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:10:07] 2025-06-04 12:09:46,905 | INFO     | CPU arch script returned: x86-64-v2
[2025-06-04 08:10:07] 2025-06-04 12:09:46,906 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678364647/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:10:07] 2025-06-04 12:09:46,907 | INFO     | extracted standard info from prmon json
[2025-06-04 08:10:07] 2025-06-04 12:09:46,907 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:10:07] 2025-06-04 12:09:46,907 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:10:07] 2025-06-04 12:09:46,907 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:10:07] 2025-06-04 12:09:46,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:10:07] 2025-06-04 12:09:46,910 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:10:07] 2025-06-04 12:09:46,910 | INFO     | sum of square deviations: 54438230.0
[2025-06-04 08:10:07] 2025-06-04 12:09:46,911 | INFO     | sum of deviations: 405919803.00000006
[2025-06-04 08:10:07] 2025-06-04 12:09:46,911 | INFO     | mean x: 1749037130.5
[2025-06-04 08:10:07] 2025-06-04 12:09:46,911 | INFO     | mean y: 2656409.1785714286
[2025-06-04 08:10:07] 2025-06-04 12:09:46,911 | INFO     | -- intersect: -13039075613.560694
[2025-06-04 08:10:07] 2025-06-04 12:09:46,911 | INFO     | intersect: -13039075613.560694
[2025-06-04 08:10:07] 2025-06-04 12:09:46,912 | INFO     | chi2: 0.0015622251955754094
[2025-06-04 08:10:07] 2025-06-04 12:09:46,912 | INFO     | -- intersect: -13039075613.560694
[2025-06-04 08:10:07] 2025-06-04 12:09:46,912 | INFO     | current memory leak: 7.46 B/s (using 56 data points, chi2=0.00)
[2025-06-04 08:10:07] 2025-06-04 12:09:46,913 | INFO     | ..............................
[2025-06-04 08:10:07] 2025-06-04 12:09:46,913 | INFO     | . Timing measurements:
[2025-06-04 08:10:07] 2025-06-04 12:09:46,913 | INFO     | . get job = 0 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,913 | INFO     | . initial setup = 3 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,913 | INFO     | . payload setup = 9 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,914 | INFO     | . stage-in = 0 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,914 | INFO     | . payload execution = 3830 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,914 | INFO     | . stage-out = 0 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,914 | INFO     | . log creation = 0 s
[2025-06-04 08:10:07] 2025-06-04 12:09:46,914 | INFO     | ..............................
[2025-06-04 08:10:07] 2025-06-04 12:09:47,160 | INFO     | 
[2025-06-04 08:10:07] 2025-06-04 12:09:47,160 | INFO     | job summary report
[2025-06-04 08:10:07] 2025-06-04 12:09:47,160 | INFO     | --------------------------------------------------
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | PanDA job id: 6678364647
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | task id: 45006595
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | errors: (none)
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | pilot state: finished 
[2025-06-04 08:10:07] 2025-06-04 12:09:47,161 | INFO     | transexitcode: 0
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | exeerrorcode: 0
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | exeerrordiag: 
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | exitcode: 0
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | exitmsg: OK
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | cpuconsumptiontime: 41600 s
[2025-06-04 08:10:07] 2025-06-04 12:09:47,162 | INFO     | nevents: 400
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | neventsw: 0
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | pid: 19710
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | pgrp: 19710
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | corecount: 12
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | event service: False
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | sizes: {0: 2405184, 5: 2405390, 11: 2405446, 3844: 2431070, 3845: 2440011, 3847: 2440067, 3854: 2440365}
[2025-06-04 08:10:07] 2025-06-04 12:09:47,163 | INFO     | --------------------------------------------------
[2025-06-04 08:10:07] 2025-06-04 12:09:47,164 | INFO     | 
[2025-06-04 08:10:07] 2025-06-04 12:09:47,164 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:10:07] 2025-06-04 12:09:47,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:10:07] 2025-06-04 12:09:47,190 | INFO     | job 6678364647 has completed (purged errors)
[2025-06-04 08:10:07] 2025-06-04 12:09:47,190 | INFO     | overall cleanup function is called
[2025-06-04 08:10:07] 2025-06-04 12:09:48,198 | INFO     | --- collectZombieJob: --- 10, [19710]
[2025-06-04 08:10:07] 2025-06-04 12:09:48,199 | INFO     | zombie collector waiting for pid 19710
[2025-06-04 08:10:07] 2025-06-04 12:09:48,199 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:10:07] 2025-06-04 12:09:48,199 | INFO     | collected zombie processes
[2025-06-04 08:10:07] 2025-06-04 12:09:48,199 | INFO     | will attempt to kill all subprocesses of pid=19710
[2025-06-04 08:10:07] 2025-06-04 12:09:48,290 | INFO     | process IDs to be killed: [19710] (in reverse order)
[2025-06-04 08:10:07] 2025-06-04 12:09:48,339 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:10:07] 2025-06-04 12:09:48,339 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:10:07] 2025-06-04 12:09:48,343 | INFO     | did not find any defunct processes belonging to 19710
[2025-06-04 08:10:07] 2025-06-04 12:09:48,346 | INFO     | did not find any defunct processes belonging to 19710
[2025-06-04 08:10:07] 2025-06-04 12:09:48,346 | INFO     | ready for new job
[2025-06-04 08:10:07] 2025-06-04 12:09:48,346 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:10:07] 2025-06-04 12:09:48,347 | INFO     | **************************************
[2025-06-04 08:10:07] 2025-06-04 12:09:48,347 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:10:07] 2025-06-04 12:09:48,347 | INFO     | **************************************
[2025-06-04 08:10:07] 2025-06-04 12:09:48,347 | INFO     | 
[2025-06-04 08:10:07] 2025-06-04 12:09:48,348 | INFO     | architecture information:
[2025-06-04 08:10:07] 2025-06-04 12:09:48,348 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:10:07] 2025-06-04 12:09:48,362 | INFO     | cat /etc/os-release:
[2025-06-04 08:10:07] NAME="CentOS Linux"
[2025-06-04 08:10:07] VERSION="7 (Core)"
[2025-06-04 08:10:07] ID="centos"
[2025-06-04 08:10:07] ID_LIKE="rhel fedora"
[2025-06-04 08:10:07] VERSION_ID="7"
[2025-06-04 08:10:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:10:07] ANSI_COLOR="0;31"
[2025-06-04 08:10:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:10:07] HOME_URL="https://www.centos.org/"
[2025-06-04 08:10:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:10:07] 
[2025-06-04 08:10:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:10:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:10:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:10:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:10:07] 
[2025-06-04 08:10:07] 2025-06-04 12:09:48,362 | INFO     | **************************************
[2025-06-04 08:10:07] 2025-06-04 12:09:48,865 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:10:07] 2025-06-04 12:09:48,881 | INFO     | sufficient remaining disk space (29423042560 B)
[2025-06-04 08:10:07] 2025-06-04 12:09:48,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:10:07] 2025-06-04 12:09:48,882 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:10:07] 2025-06-04 12:09:48,882 | INFO     | update_server=False
[2025-06-04 08:10:07] 2025-06-04 12:09:48,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:10:07] 2025-06-04 12:09:48,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:10:07] 2025-06-04 12:09:48,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:10:07] 2025-06-04 12:09:48,897 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 08:10:07] 2025-06-04 12:09:48,897 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 08:10:07] 2025-06-04 12:09:48,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:10:07] 2025-06-04 12:09:48,898 | INFO     | will abort loop
[2025-06-04 08:10:07] 2025-06-04 12:09:49,037 | INFO     | all payload control threads have been joined
[2025-06-04 08:10:07] 2025-06-04 12:09:49,066 | INFO     | all job control threads have been joined
[2025-06-04 08:10:07] 2025-06-04 12:09:49,734 | INFO     | all data control threads have been joined
[2025-06-04 08:10:07] 2025-06-04 12:09:49,807 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:10:07] 2025-06-04 12:09:49,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:10:07] 2025-06-04 12:09:49,808 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:10:07] 2025-06-04 12:09:49,885 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:49,888 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:49,903 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:49,929 | INFO     | [job] validate thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,043 | INFO     | [payload] control thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,072 | INFO     | [job] control thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,180 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,386 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,423 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,629 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,667 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:10:07] 2025-06-04 12:09:50,740 | INFO     | [data] control thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,888 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:50,976 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:51,277 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:54,673 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:09:59,592 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:10:07] 2025-06-04 12:10:00,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:10:07] 2025-06-04 12:10:01,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140171601626944)>', '<ExcThread(monitor, started 140170779141888)>']
[2025-06-04 08:10:07] 2025-06-04 12:10:02,866 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:10:07] 2025-06-04 12:10:02,866 | INFO     | [monitor] control thread has ended
[2025-06-04 08:10:07] 2025-06-04 12:10:06,979 | INFO     | all workflow threads have been joined
[2025-06-04 08:10:07] 2025-06-04 12:10:06,979 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:10:07] 2025-06-04 12:10:06,979 | INFO     | traces error code: 0
[2025-06-04 08:10:07] 2025-06-04 12:10:06,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:10:07] 2025-06-04 12:10:07,066 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:10:07] 2025-06-04 12:10:07,069 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:10:07] 2025-06-04 12:10:07,073 [wrapper] pilotpid: 13270
[2025-06-04 08:10:07] 2025-06-04 12:10:07,076 [wrapper] Pilot exit status: 0
[2025-06-04 08:10:07] 2025-06-04 12:10:07,091 [wrapper] pandaids: 6678364647
[2025-06-04 08:10:07] 2025-06-04 12:10:07,129 [wrapper] cleanup supervisor_pilot 26676 13271
[2025-06-04 08:10:07] 2025-06-04 12:10:07,133 [wrapper] Test setup, not cleaning
[2025-06-04 08:10:07] 2025-06-04 12:10:07,136 [wrapper] apfmon messages muted
[2025-06-04 08:10:07] 2025-06-04 12:10:07,140 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:10:07] 2025-06-04 12:10:07,143 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:10:07]  *** Error codes and diagnostics ***
[2025-06-04 08:10:07]     "exeErrorCode": 0,
[2025-06-04 08:10:07]     "exeErrorDiag": "",
[2025-06-04 08:10:07]     "pilotErrorCode": 0,
[2025-06-04 08:10:07]     "pilotErrorDiag": "",
[2025-06-04 08:10:07]  *** Listing of results directory ***
[2025-06-04 08:10:07] total 387460
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 02:29 queuedata.json
[2025-06-04 08:10:07] -rwx------ 1 boincer umatlas     37140 Jun  4 02:30 runpilot2-wrapper.sh
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas       100 Jun  4 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:10:07] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 07:05 run_atlas
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas       105 Jun  4 07:05 job.xml
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas 213750168 Jun  4 07:05 EVNT.45006593._002166.pool.root.1
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:05 start_atlas.sh
[2025-06-04 08:10:07] drwxrwx--x 2 boincer umatlas      4096 Jun  4 07:05 shared
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:05 input.tar.gz
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas         0 Jun  4 07:05 boinc_lockfile
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas      2525 Jun  4 07:05 pandaJob.out
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas    986812 Jun  4 07:05 agis_schedconf.cvmfs.json
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas   1603667 Jun  4 07:05 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:10:07] drwx------ 4 boincer umatlas      4096 Jun  4 07:05 pilot3
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas        95 Jun  4 08:09 pilot_heartbeat.json
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas 177675787 Jun  4 08:09 HITS.45006595._054131.pool.root.1
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas       530 Jun  4 08:09 boinc_task_state.xml
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas      1047 Jun  4 08:09 memory_monitor_summary.json
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas    368554 Jun  4 08:09 log.45006595._054131.job.log.tgz.1
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas      7742 Jun  4 08:09 heartbeat.json
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas        27 Jun  4 08:09 wrapper_checkpoint.txt
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas      4611 Jun  4 08:10 pilotlog.txt
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas    377530 Jun  4 08:10 log.45006595._054131.job.log.1
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas       357 Jun  4 08:10 output.list
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas      5868 Jun  4 08:10 init_data.xml
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:10 boinc_mmap_file
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:10 runtime_log
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas    768000 Jun  4 08:10 result.tar.gz
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas      8661 Jun  4 08:10 runtime_log.err
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas       659 Jun  4 08:10 FV2LDmxowg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhVnKDmPwMTLo.diag
[2025-06-04 08:10:07] -rw-r--r-- 1 boincer umatlas     21525 Jun  4 08:10 stderr.txt
[2025-06-04 08:10:07] HITS file was successfully produced:
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas 177675787 Jun  4 08:09 shared/HITS.pool.root.1
[2025-06-04 08:10:07]  *** Contents of shared directory: ***
[2025-06-04 08:10:07] total 383532
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas 213750168 Jun  4 07:05 ATLAS.root_0
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:05 start_atlas.sh
[2025-06-04 08:10:07] -rw-r--r-- 2 boincer umatlas    508881 Jun  4 07:05 input.tar.gz
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas 177675787 Jun  4 08:09 HITS.pool.root.1
[2025-06-04 08:10:07] -rw------- 1 boincer umatlas    768000 Jun  4 08:10 result.tar.gz
08:10:09 (9016): run_atlas exited; CPU time 41583.662333
08:10:09 (9016): called boinc_finish(0)

</stderr_txt>
]]>

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