Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:29 (1192618): wrapper (7.7.26015): starting
07:04:29 (1192618): wrapper: running run_atlas (--nthreads 10)
[2025-06-04 07:04:29] Arguments: --nthreads 10
[2025-06-04 07:04:29] Threads: 10
[2025-06-04 07:04:29] Checking for CVMFS
[2025-06-04 07:04:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:04:30] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:04:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:04:30] 2.12.6.0 551375 178919 306700 146777 3 282 26528884 32935936 14655 130560 1 377844001 99.659 344480715 26813 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:04:30] CVMFS is ok
[2025-06-04 07:04:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:04:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:04:30] Further information can be found at the LHC@home message board.
[2025-06-04 07:04:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:04:30] Checking for apptainer binary...
[2025-06-04 07:04:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:04:30] Running /usr/bin/apptainer --version
[2025-06-04 07:04:30] apptainer version 1.4.1-1.el9
[2025-06-04 07:04:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:04:30] c-4-40.aglt2.org
[2025-06-04 07:04:30] apptainer works
[2025-06-04 07:04:30] Set ATHENA_PROC_NUMBER=10
[2025-06-04 07:04:30] Set ATHENA_CORE_NUMBER=10
[2025-06-04 07:04:30] Starting ATLAS job with PandaID=6678364482
[2025-06-04 07:04:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:29:39]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:29:39]  guid=7c78a1da-2c6e-4412-be65-45d77b5d4026
[2025-06-04 08:29:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 08:29:39]  is_altstaged=None
[2025-06-04 08:29:39]  is_tar=False
[2025-06-04 08:29:39]  lfn=log.45006595._053982.job.log.tgz.1
[2025-06-04 08:29:39]  mtime=0
[2025-06-04 08:29:39]  protocol_id=None
[2025-06-04 08:29:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:29:39]  replicas=None
[2025-06-04 08:29:39]  scope=mc23_13p6TeV
[2025-06-04 08:29:39]  status=None
[2025-06-04 08:29:39]  status_code=0
[2025-06-04 08:29:39]  storage_token=
[2025-06-04 08:29:39]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678364482/log.45006595._053982.job.log.tgz.1
[2025-06-04 08:29:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/a6/log.45006595._053982.job.log.tgz.1
[2025-06-04 08:29:39]  workdir=None
[2025-06-04 08:29:39] ]
[2025-06-04 08:29:39] 2025-06-04 12:29:15,179 | INFO     | transferring file log.45006595._053982.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678364482/log.45006595._053982.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:29:39] 2025-06-04 12:29:15,179 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678364482/log.45006595._053982.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._053982.job
[2025-06-04 08:29:39] 2025-06-04 12:29:15,195 | INFO     | adding to output.list: log.45006595._053982.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/de/a6/log.45006595._053982.job.log.tg
[2025-06-04 08:29:39] 2025-06-04 12:29:15,196 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:29:39] 2025-06-04 12:29:15,196 | INFO     | summary of transferred files:
[2025-06-04 08:29:39] 2025-06-04 12:29:15,196 | INFO     |  -- lfn=log.45006595._053982.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:29:39] 2025-06-04 12:29:15,196 | INFO     | stage-out finished correctly
[2025-06-04 08:29:39] 2025-06-04 12:29:15,302 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:29:39] 2025-06-04 12:29:15,625 | INFO     | monitor loop #370: job 0:6678364482 is in state 'finished'
[2025-06-04 08:29:39] 2025-06-04 12:29:15,626 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:29:39] 2025-06-04 12:29:15,797 | INFO     | job 6678364482 has state=finished
[2025-06-04 08:29:39] 2025-06-04 12:29:15,798 | INFO     | preparing for final server update for job 6678364482 in state='finished'
[2025-06-04 08:29:39] 2025-06-04 12:29:15,859 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-06-04 08:29:39] 2025-06-04 12:29:15,860 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:29:39] 2025-06-04 12:29:15,860 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:29:39] 2025-06-04 12:29:15,860 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:29:39] 2025-06-04 12:29:15,860 | INFO     | job 6678364482 has finished - writing final server update
[2025-06-04 08:29:39] 2025-06-04 12:29:15,860 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:29:39] 2025-06-04 12:29:15,876 | INFO     | executing command: lscpu
[2025-06-04 08:29:39] 2025-06-04 12:29:15,935 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:29:39] 2025-06-04 12:29:18,128 | INFO     | monitor loop #371: job 0:6678364482 is in state 'finished'
[2025-06-04 08:29:39] 2025-06-04 12:29:18,129 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:29:39] 2025-06-04 12:29:19,992 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 08:29:39] 2025-06-04 12:29:19,992 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678364482/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:29:39] 2025-06-04 12:29:19,993 | INFO     | extracted standard info from prmon json
[2025-06-04 08:29:39] 2025-06-04 12:29:19,993 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:29:39] 2025-06-04 12:29:19,993 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:29:39] 2025-06-04 12:29:19,993 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:29:39] 2025-06-04 12:29:19,993 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | sum of square deviations: 136095575.0
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | sum of deviations: 11761250973.0
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | mean x: 1749037700.5
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | mean y: 2214141.5
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | -- intersect: -151147970989.93655
[2025-06-04 08:29:39] 2025-06-04 12:29:19,995 | INFO     | intersect: -151147970989.93655
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | chi2: 1.0631871185000417
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | -- intersect: -151147970989.93655
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | current memory leak: 86.42 B/s (using 76 data points, chi2=1.06)
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | ..............................
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | . Timing measurements:
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | . get job = 0 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | . initial setup = 2 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,996 | INFO     | . payload setup = 6 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,997 | INFO     | . stage-in = 0 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,997 | INFO     | . payload execution = 5047 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,997 | INFO     | . stage-out = 0 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,997 | INFO     | . log creation = 0 s
[2025-06-04 08:29:39] 2025-06-04 12:29:19,997 | INFO     | ..............................
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | 
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | job summary report
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | --------------------------------------------------
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | PanDA job id: 6678364482
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | task id: 45006595
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | errors: (none)
[2025-06-04 08:29:39] 2025-06-04 12:29:20,060 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | pilot state: finished 
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | transexitcode: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | exeerrorcode: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | exeerrordiag: 
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | exitcode: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | exitmsg: OK
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | cpuconsumptiontime: 40864 s
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | nevents: 400
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | neventsw: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | pid: 1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:20,061 | INFO     | pgrp: 1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | corecount: 10
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | event service: False
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | sizes: {0: 2405184, 4: 2405390, 11: 2405418, 5057: 2431645, 5058: 2440642, 5063: 2440756}
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | --------------------------------------------------
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | 
[2025-06-04 08:29:39] 2025-06-04 12:29:20,062 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:29:39] 2025-06-04 12:29:20,083 | INFO     | job 6678364482 has completed (purged errors)
[2025-06-04 08:29:39] 2025-06-04 12:29:20,084 | INFO     | overall cleanup function is called
[2025-06-04 08:29:39] 2025-06-04 12:29:21,090 | INFO     | --- collectZombieJob: --- 10, [1203300]
[2025-06-04 08:29:39] 2025-06-04 12:29:21,090 | INFO     | zombie collector waiting for pid 1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:21,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:29:39] 2025-06-04 12:29:21,091 | INFO     | collected zombie processes
[2025-06-04 08:29:39] 2025-06-04 12:29:21,091 | INFO     | will attempt to kill all subprocesses of pid=1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:21,491 | INFO     | process IDs to be killed: [1203300] (in reverse order)
[2025-06-04 08:29:39] 2025-06-04 12:29:21,600 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:29:39] 2025-06-04 12:29:21,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:29:39] 2025-06-04 12:29:21,617 | INFO     | did not find any defunct processes belonging to 1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:21,630 | INFO     | did not find any defunct processes belonging to 1203300
[2025-06-04 08:29:39] 2025-06-04 12:29:21,631 | INFO     | ready for new job
[2025-06-04 08:29:39] 2025-06-04 12:29:21,631 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:29:39] 2025-06-04 12:29:21,633 | INFO     | **************************************
[2025-06-04 08:29:39] 2025-06-04 12:29:21,633 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:29:39] 2025-06-04 12:29:21,633 | INFO     | **************************************
[2025-06-04 08:29:39] 2025-06-04 12:29:21,633 | INFO     | 
[2025-06-04 08:29:39] 2025-06-04 12:29:21,647 | INFO     | architecture information:
[2025-06-04 08:29:39] 2025-06-04 12:29:21,648 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:29:39] 2025-06-04 12:29:21,663 | INFO     | cat /etc/os-release:
[2025-06-04 08:29:39] NAME="CentOS Linux"
[2025-06-04 08:29:39] VERSION="7 (Core)"
[2025-06-04 08:29:39] ID="centos"
[2025-06-04 08:29:39] ID_LIKE="rhel fedora"
[2025-06-04 08:29:39] VERSION_ID="7"
[2025-06-04 08:29:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:29:39] ANSI_COLOR="0;31"
[2025-06-04 08:29:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:29:39] HOME_URL="https://www.centos.org/"
[2025-06-04 08:29:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:29:39] 
[2025-06-04 08:29:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:29:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:29:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:29:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:29:39] 
[2025-06-04 08:29:39] 2025-06-04 12:29:21,664 | INFO     | **************************************
[2025-06-04 08:29:39] 2025-06-04 12:29:22,166 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:29:39] 2025-06-04 12:29:22,184 | INFO     | sufficient remaining disk space (76520882176 B)
[2025-06-04 08:29:39] 2025-06-04 12:29:22,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:29:39] 2025-06-04 12:29:22,185 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:29:39] 2025-06-04 12:29:22,185 | INFO     | update_server=False
[2025-06-04 08:29:39] 2025-06-04 12:29:22,185 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:29:39] 2025-06-04 12:29:22,185 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:29:39] 2025-06-04 12:29:22,185 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:29:39] 2025-06-04 12:29:22,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:29:39] 2025-06-04 12:29:22,186 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:29:39] 2025-06-04 12:29:22,186 | INFO     | aborting loop
[2025-06-04 08:29:39] 2025-06-04 12:29:22,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:29:39] 2025-06-04 12:29:22,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:29:39] 2025-06-04 12:29:22,409 | INFO     | all payload control threads have been joined
[2025-06-04 08:29:39] 2025-06-04 12:29:22,594 | INFO     | all job control threads have been joined
[2025-06-04 08:29:39] 2025-06-04 12:29:22,991 | INFO     | all data control threads have been joined
[2025-06-04 08:29:39] 2025-06-04 12:29:23,187 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,192 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:29:39] 2025-06-04 12:29:23,380 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,414 | INFO     | [payload] control thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,599 | INFO     | [job] control thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,724 | INFO     | [job] validate thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,904 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:23,996 | INFO     | [data] control thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:24,278 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:24,351 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:24,385 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:24,554 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:25,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:29:39] 2025-06-04 12:29:25,315 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:26,075 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:26,192 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:32,635 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:29:39] 2025-06-04 12:29:33,640 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:29:39] 2025-06-04 12:29:33,668 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182948366144)>', '<ExcThread(monitor, started 140182447691520)>']
[2025-06-04 08:29:39] 2025-06-04 12:29:34,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:29:39] 2025-06-04 12:29:34,247 | INFO     | [monitor] control thread has ended
[2025-06-04 08:29:39] 2025-06-04 12:29:38,683 | INFO     | all workflow threads have been joined
[2025-06-04 08:29:39] 2025-06-04 12:29:38,683 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:29:39] 2025-06-04 12:29:38,684 | INFO     | traces error code: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:38,684 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:29:39] 2025-06-04 12:29:38,849 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:29:39] 2025-06-04 12:29:38,852 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:29:39] 2025-06-04 12:29:38,855 [wrapper] pilotpid: 1196217
[2025-06-04 08:29:39] 2025-06-04 12:29:38,858 [wrapper] Pilot exit status: 0
[2025-06-04 08:29:39] 2025-06-04 12:29:38,869 [wrapper] pandaids: 6678364482
[2025-06-04 08:29:39] 2025-06-04 12:29:38,937 [wrapper] cleanup supervisor_pilot 1714390 1196218
[2025-06-04 08:29:39] 2025-06-04 12:29:38,940 [wrapper] Test setup, not cleaning
[2025-06-04 08:29:39] 2025-06-04 12:29:38,943 [wrapper] apfmon messages muted
[2025-06-04 08:29:39] 2025-06-04 12:29:38,946 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:29:39] 2025-06-04 12:29:38,949 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:29:39]  *** Error codes and diagnostics ***
[2025-06-04 08:29:39]     "exeErrorCode": 0,
[2025-06-04 08:29:39]     "exeErrorDiag": "",
[2025-06-04 08:29:39]     "pilotErrorCode": 0,
[2025-06-04 08:29:39]     "pilotErrorDiag": "",
[2025-06-04 08:29:39]  *** Listing of results directory ***
[2025-06-04 08:29:39] total 385912
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 01:59 pilot3.tar.gz
[2025-06-04 08:29:39] -rwx------. 1 boincer umatlas     37140 Jun  4 02:23 runpilot2-wrapper.sh
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 02:23 queuedata.json
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:29:39] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:04 run_atlas
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:04 job.xml
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas 213574718 Jun  4 07:04 EVNT.45006593._002160.pool.root.1
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:04 start_atlas.sh
[2025-06-04 08:29:39] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:04 shared
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 07:04 input.tar.gz
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:04 boinc_lockfile
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:04 pandaJob.out
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas    986812 Jun  4 07:04 agis_schedconf.cvmfs.json
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas   1603667 Jun  4 07:04 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:29:39] drwx------. 4 boincer umatlas      4096 Jun  4 07:04 pilot3
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas      6673 Jun  4 08:19 init_data.xml
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas        95 Jun  4 08:28 pilot_heartbeat.json
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas 176084047 Jun  4 08:28 HITS.45006595._053982.pool.root.1
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas       529 Jun  4 08:28 boinc_task_state.xml
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas      1042 Jun  4 08:29 memory_monitor_summary.json
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas    354087 Jun  4 08:29 log.45006595._053982.job.log.tgz.1
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas      7714 Jun  4 08:29 heartbeat.json
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:29 boinc_mmap_file
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas        27 Jun  4 08:29 wrapper_checkpoint.txt
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas      4548 Jun  4 08:29 pilotlog.txt
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas    490712 Jun  4 08:29 log.45006595._053982.job.log.1
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas       357 Jun  4 08:29 output.list
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:29 runtime_log
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas    860160 Jun  4 08:29 result.tar.gz
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas       652 Jun  4 08:29 zJEODmwhwg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmiSnKDmdz3sGm.diag
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas      8651 Jun  4 08:29 runtime_log.err
[2025-06-04 08:29:39] -rw-r--r--. 1 boincer umatlas     21274 Jun  4 08:29 stderr.txt
[2025-06-04 08:29:39] HITS file was successfully produced:
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas 176084047 Jun  4 08:28 shared/HITS.pool.root.1
[2025-06-04 08:29:39]  *** Contents of shared directory: ***
[2025-06-04 08:29:39] total 381888
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas 213574718 Jun  4 07:04 ATLAS.root_0
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:04 start_atlas.sh
[2025-06-04 08:29:39] -rw-r--r--. 2 boincer umatlas    508881 Jun  4 07:04 input.tar.gz
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas 176084047 Jun  4 08:28 HITS.pool.root.1
[2025-06-04 08:29:39] -rw-------. 1 boincer umatlas    860160 Jun  4 08:29 result.tar.gz
08:29:40 (1192618): run_atlas exited; CPU time 40988.790375
08:29:40 (1192618): called boinc_finish(0)

</stderr_txt>
]]>

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