Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:14:49 (15161): wrapper (7.7.26015): starting
22:14:49 (15161): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 22:14:49] Arguments: --nthreads 8
[2025-06-04 22:14:49] Threads: 8
[2025-06-04 22:14:49] Checking for CVMFS
[2025-06-04 22:14:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 22:14:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 22:14:50] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 22:14:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 22:14:51] 2.11.2.0 20118 33687 90664 146792 3 60 17680354 25165825 3134 130560 0 17084000 99.808 19405189 2024 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-04 22:14:51] CVMFS is ok
[2025-06-04 22:14:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 22:14:51] Checking for apptainer binary...
[2025-06-04 22:14:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 22:14:51] Running /usr/bin/apptainer --version
[2025-06-04 22:14:51] apptainer version 1.3.2-1.el7
[2025-06-04 22:14:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 22:15:02] cg-vwn344.simple-grid.lan
[2025-06-04 22:15:02] apptainer works
[2025-06-04 22:15:02] Set ATHENA_PROC_NUMBER=8
[2025-06-04 22:15:02] Set ATHENA_CORE_NUMBER=8
[2025-06-04 22:15:02] Starting ATLAS job with PandaID=6678244494
[2025-06-04 22:15:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 02:20:20]  *** The last 200 lines of the pilot log: ***
[2025-06-05 02:20:20] 2025-06-05 00:15:22,115 | INFO     | extracted standard info from prmon json
[2025-06-05 02:20:20] 2025-06-05 00:15:22,115 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 02:20:20] 2025-06-05 00:15:22,116 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 02:20:20] 2025-06-05 00:15:22,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 02:20:20] 2025-06-05 00:15:22,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 02:20:20] 2025-06-05 00:15:22,147 | INFO     | fitting pss+swap vs Time
[2025-06-05 02:20:20] 2025-06-05 00:15:22,148 | INFO     | sum of square deviations: 3485088600.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,150 | INFO     | sum of deviations: 37058062755.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,150 | INFO     | mean x: 1749075582.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,150 | INFO     | mean y: 2461041.28125
[2025-06-05 02:20:20] 2025-06-05 00:15:22,150 | INFO     | -- intersect: -18596019554.132515
[2025-06-05 02:20:20] 2025-06-05 00:15:22,150 | INFO     | intersect: -18596019554.132515
[2025-06-05 02:20:20] 2025-06-05 00:15:22,151 | INFO     | chi2: 6.296829295789709
[2025-06-05 02:20:20] 2025-06-05 00:15:22,151 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,153 | INFO     | sum of deviations: 51353649283.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,153 | INFO     | mean x: 1749075430.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,153 | INFO     | mean y: 2470413.1232876712
[2025-06-05 02:20:20] 2025-06-05 00:15:22,153 | INFO     | -- intersect: -27576505570.88426
[2025-06-05 02:20:20] 2025-06-05 00:15:22,153 | INFO     | intersect: -27576505570.88426
[2025-06-05 02:20:20] 2025-06-05 00:15:22,154 | INFO     | chi2: 5.562750213111408
[2025-06-05 02:20:20] 2025-06-05 00:15:22,154 | INFO     | current chi2=5.562750213111408 (change=11.657916201875334 %)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,154 | INFO     | right removable region: 218
[2025-06-05 02:20:20] 2025-06-05 00:15:22,154 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,156 | INFO     | sum of deviations: -38304975559.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,156 | INFO     | mean x: 1749075735.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,156 | INFO     | mean y: 2511339.5388127854
[2025-06-05 02:20:20] 2025-06-05 00:15:22,156 | INFO     | -- intersect: 20573828080.883133
[2025-06-05 02:20:20] 2025-06-05 00:15:22,156 | INFO     | intersect: 20573828080.883133
[2025-06-05 02:20:20] 2025-06-05 00:15:22,157 | INFO     | chi2: 1.7987962806240425
[2025-06-05 02:20:20] 2025-06-05 00:15:22,157 | INFO     | current chi2=1.7987962806240425 (change=71.43330085465738 %)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,157 | INFO     | sum of square deviations: 3038856977.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,166 | INFO     | sum of deviations: -63924885858.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,166 | INFO     | mean x: 1749075887.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,167 | INFO     | mean y: 2529099.714953271
[2025-06-05 02:20:20] 2025-06-05 00:15:22,167 | INFO     | -- intersect: 36795796204.465385
[2025-06-05 02:20:20] 2025-06-05 00:15:22,167 | INFO     | intersect: 36795796204.465385
[2025-06-05 02:20:20] 2025-06-05 00:15:22,167 | INFO     | chi2: 1.0153633154104977
[2025-06-05 02:20:20] 2025-06-05 00:15:22,167 | INFO     | current chi2=1.0153633154104977 (change=43.55317907049232 %)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,168 | INFO     | sum of square deviations: 2830787960.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,169 | INFO     | sum of deviations: -60022110281.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,169 | INFO     | mean x: 1749076040.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | mean y: 2526210.210526316
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | -- intersect: 37088749709.173965
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | intersect: 37088749709.173965
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | chi2: 1.0056564202642098
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | current chi2=1.0056564202642098 (change=0.9560021520339848 %)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,170 | INFO     | left removable region: 30
[2025-06-05 02:20:20] 2025-06-05 00:15:22,171 | INFO     | sum of square deviations: 2060343747.0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,172 | INFO     | sum of deviations: -24457006604.500008
[2025-06-05 02:20:20] 2025-06-05 00:15:22,172 | INFO     | mean x: 1749076314.5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,172 | INFO     | mean y: 2520934.962765957
[2025-06-05 02:20:20] 2025-06-05 00:15:22,172 | INFO     | -- intersect: 20764673385.391235
[2025-06-05 02:20:20] 2025-06-05 00:15:22,172 | INFO     | intersect: 20764673385.391235
[2025-06-05 02:20:20] 2025-06-05 00:15:22,173 | INFO     | chi2: 0.1500500991282867
[2025-06-05 02:20:20] 2025-06-05 00:15:22,173 | INFO     | -- intersect: 20764673385.391235
[2025-06-05 02:20:20] 2025-06-05 00:15:22,173 | INFO     | current memory leak: -11.87 B/s (using 188 data points, chi2=0.15)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | ..............................
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . Timing measurements:
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . get job = 0 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . initial setup = 9 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . payload setup = 139 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . stage-in = 0 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . payload execution = 13795 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . stage-out = 3 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,174 | INFO     | . log creation = 1 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,175 | INFO     | ..............................
[2025-06-05 02:20:20] 2025-06-05 00:15:22,356 | INFO     | 
[2025-06-05 02:20:20] 2025-06-05 00:15:22,356 | INFO     | job summary report
[2025-06-05 02:20:20] 2025-06-05 00:15:22,356 | INFO     | --------------------------------------------------
[2025-06-05 02:20:20] 2025-06-05 00:15:22,356 | INFO     | PanDA job id: 6678244494
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | task id: 45006595
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | errors: (none)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | pilot state: finished 
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | transexitcode: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | exeerrorcode: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | exeerrordiag: 
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | exitcode: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | exitmsg: OK
[2025-06-05 02:20:20] 2025-06-05 00:15:22,357 | INFO     | cpuconsumptiontime: 50986 s
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | nevents: 400
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | neventsw: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | pid: 1865
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | pgrp: 1865
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | corecount: 8
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | event service: False
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | sizes: {0: 2397113, 1: 2397368, 12: 2397368, 23: 2397396, 33: 2397424, 44: 2397480, 55: 2397636, 66: 2397664, 76: 2397692, 87: 2397748, 92: 2397982, 98: 2398290, 1
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | --------------------------------------------------
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | 
[2025-06-05 02:20:20] 2025-06-05 00:15:22,358 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-06-05 02:20:20] 2025-06-05 00:15:22,627 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,628 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,629 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 02:20:20] 2025-06-05 00:15:22,630 | INFO     | job 6678244494 has completed (purged errors)
[2025-06-05 02:20:20] 2025-06-05 00:15:22,630 | INFO     | overall cleanup function is called
[2025-06-05 02:20:20] 2025-06-05 00:15:23,638 | INFO     | --- collectZombieJob: --- 10, [1865]
[2025-06-05 02:20:20] 2025-06-05 00:15:23,638 | INFO     | zombie collector waiting for pid 1865
[2025-06-05 02:20:20] 2025-06-05 00:15:23,638 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 02:20:20] 2025-06-05 00:15:23,638 | INFO     | collected zombie processes
[2025-06-05 02:20:20] 2025-06-05 00:15:23,638 | INFO     | will attempt to kill all subprocesses of pid=1865
[2025-06-05 02:20:20] 2025-06-05 00:15:23,778 | INFO     | process IDs to be killed: [1865] (in reverse order)
[2025-06-05 02:20:20] 2025-06-05 00:15:24,379 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 02:20:20] 2025-06-05 00:15:24,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 02:20:20] 2025-06-05 00:15:24,383 | INFO     | did not find any defunct processes belonging to 1865
[2025-06-05 02:20:20] 2025-06-05 00:15:24,386 | INFO     | did not find any defunct processes belonging to 1865
[2025-06-05 02:20:20] 2025-06-05 00:15:24,387 | INFO     | ready for new job
[2025-06-05 02:20:20] 2025-06-05 00:15:24,387 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 02:20:20] 2025-06-05 00:15:24,389 | INFO     | **************************************
[2025-06-05 02:20:20] 2025-06-05 00:15:24,389 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 02:20:20] 2025-06-05 00:15:24,389 | INFO     | **************************************
[2025-06-05 02:20:20] 2025-06-05 00:15:24,389 | INFO     | 
[2025-06-05 02:20:20] 2025-06-05 00:15:24,390 | INFO     | pilot is running in a VM
[2025-06-05 02:20:20] 2025-06-05 00:15:24,390 | INFO     | architecture information:
[2025-06-05 02:20:20] 2025-06-05 00:15:24,401 | INFO     | executing command: cat /etc/os-release
[2025-06-05 02:20:20] 2025-06-05 00:15:24,594 | INFO     | cat /etc/os-release:
[2025-06-05 02:20:20] NAME="CentOS Linux"
[2025-06-05 02:20:20] VERSION="7 (Core)"
[2025-06-05 02:20:20] ID="centos"
[2025-06-05 02:20:20] ID_LIKE="rhel fedora"
[2025-06-05 02:20:20] VERSION_ID="7"
[2025-06-05 02:20:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 02:20:20] ANSI_COLOR="0;31"
[2025-06-05 02:20:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 02:20:20] HOME_URL="https://www.centos.org/"
[2025-06-05 02:20:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 02:20:20] 
[2025-06-05 02:20:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 02:20:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 02:20:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 02:20:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 02:20:20] 
[2025-06-05 02:20:20] 2025-06-05 00:15:24,594 | INFO     | **************************************
[2025-06-05 02:20:20] 2025-06-05 00:15:25,098 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-06-05 02:20:20] 2025-06-05 00:15:25,313 | INFO     | sufficient remaining disk space (497245224960 B)
[2025-06-05 02:20:20] 2025-06-05 00:15:25,314 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 02:20:20] 2025-06-05 00:15:25,314 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 02:20:20] 2025-06-05 00:15:25,314 | INFO     | update_server=False
[2025-06-05 02:20:20] 2025-06-05 00:15:25,314 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 02:20:20] 2025-06-05 00:15:25,315 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 02:20:20] 2025-06-05 00:15:25,315 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 02:20:20] 2025-06-05 00:15:25,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 02:20:20] 2025-06-05 00:15:25,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 02:20:20] 2025-06-05 00:15:25,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:20:20] 2025-06-05 00:15:25,319 | INFO     | aborting loop
[2025-06-05 02:20:20] 2025-06-05 00:15:25,373 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 02:20:20] 2025-06-05 00:15:25,778 | INFO     | all job control threads have been joined
[2025-06-05 02:20:20] 2025-06-05 00:15:25,818 | INFO     | all data control threads have been joined
[2025-06-05 02:20:20] 2025-06-05 00:15:26,001 | INFO     | all payload control threads have been joined
[2025-06-05 02:20:20] 2025-06-05 00:15:26,320 | INFO     | [job] retrieve thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,325 | INFO     | [job] job monitor thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,425 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,548 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 02:20:20] 2025-06-05 00:15:26,784 | INFO     | [job] control thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,824 | INFO     | [data] control thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,840 | INFO     | [job] validate thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:26,890 | INFO     | [payload] validate_post thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,008 | INFO     | [payload] control thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,032 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,335 | INFO     | [payload] failed_post thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,365 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,373 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 02:20:20] 2025-06-05 00:15:27,380 | INFO     | [data] copytool_out thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:27,659 | INFO     | [data] copytool_in thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:28,380 | INFO     | [job] queue monitor thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:30,785 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 02:20:20] 2025-06-05 00:15:31,196 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591114372928)>', '<ExcThread(monitor, started 140590385723136)>']
[2025-06-05 02:20:20] 2025-06-05 00:15:31,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 02:20:20] 2025-06-05 00:15:31,352 | INFO     | [monitor] control thread has ended
[2025-06-05 02:20:20] 2025-06-05 00:15:36,222 | INFO     | all workflow threads have been joined
[2025-06-05 02:20:20] 2025-06-05 00:15:36,222 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 02:20:20] 2025-06-05 00:15:36,222 | INFO     | traces error code: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:36,223 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 02:20:20] 2025-06-05 00:15:36,670 [wrapper] ==== pilot stdout END ====
[2025-06-05 02:20:20] 2025-06-05 00:15:36,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 02:20:20] 2025-06-05 00:15:36,864 [wrapper] pilotpid: 25642
[2025-06-05 02:20:20] 2025-06-05 00:15:36,973 [wrapper] Pilot exit status: 0
[2025-06-05 02:20:20] 2025-06-05 00:15:37,366 [wrapper] pandaids: 6678244494
[2025-06-05 02:20:20] 2025-06-05 00:15:38,224 [wrapper] cleanup supervisor_pilot  9797 25643
[2025-06-05 02:20:20] 2025-06-05 00:15:38,311 [wrapper] Test setup, not cleaning
[2025-06-05 02:20:20] 2025-06-05 00:15:38,403 [wrapper] apfmon messages muted
[2025-06-05 02:20:20] 2025-06-05 00:15:38,507 [wrapper] ==== wrapper stdout END ====
[2025-06-05 02:20:20] 2025-06-05 00:15:38,635 [wrapper] ==== wrapper stderr END ====
[2025-06-05 02:20:20]  *** Error codes and diagnostics ***
[2025-06-05 02:20:20]     "exeErrorCode": 0,
[2025-06-05 02:20:20]     "exeErrorDiag": "",
[2025-06-05 02:20:20]     "pilotErrorCode": 0,
[2025-06-05 02:20:20]     "pilotErrorDiag": "",
[2025-06-05 02:20:20]  *** Listing of results directory ***
[2025-06-05 02:20:20] total 391128
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc    495897 Jun  4 01:58 pilot3.tar.gz
[2025-06-05 02:20:20] -rwx------. 1 boinc boinc     37140 Jun  4 02:57 runpilot2-wrapper.sh
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc      5111 Jun  4 02:57 queuedata.json
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc       100 Jun  4 22:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 02:20:20] -rwxr-xr-x. 1 boinc boinc      7986 Jun  4 22:14 run_atlas
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc       105 Jun  4 22:14 job.xml
[2025-06-05 02:20:20] -rw-r--r--. 2 boinc boinc 215094398 Jun  4 22:14 EVNT.45006593._001985.pool.root.1
[2025-06-05 02:20:20] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:14 start_atlas.sh
[2025-06-05 02:20:20] drwxrwx--x. 2 boinc boinc        68 Jun  4 22:14 shared
[2025-06-05 02:20:20] -rw-r--r--. 2 boinc boinc    508879 Jun  4 22:14 input.tar.gz
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc      6391 Jun  4 22:14 init_data.xml
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc         0 Jun  4 22:14 boinc_lockfile
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc      2524 Jun  4 22:15 pandaJob.out
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc    991007 Jun  4 22:18 agis_schedconf.cvmfs.json
[2025-06-05 02:20:20] drwx------. 4 boinc boinc      4096 Jun  4 22:18 pilot3
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc 178440543 Jun  5 02:12 HITS.45006595._049499.pool.root.1
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc       531 Jun  5 02:13 boinc_task_state.xml
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc      1019 Jun  5 02:13 memory_monitor_summary.json
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc   1598969 Jun  5 02:13 agis_ddmendpoints.agis.ALL.json
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc    371775 Jun  5 02:13 log.45006595._049499.job.log.tgz.1
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc        95 Jun  5 02:14 pilot_heartbeat.json
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc      7696 Jun  5 02:15 heartbeat.json
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc      4539 Jun  5 02:15 pilotlog.txt
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc   1210532 Jun  5 02:15 log.45006595._049499.job.log.1
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc       357 Jun  5 02:15 output.list
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc       620 Jun  5 02:15 runtime_log
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc   1597440 Jun  5 02:15 result.tar.gz
[2025-06-05 02:20:20] -rw-------. 1 boinc boinc       657 Jun  5 02:15 Zo5MDmUcrg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpimKDmkJPqCn.diag
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc      8659 Jun  5 02:15 runtime_log.err
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc      8192 Jun  5 02:20 boinc_mmap_file
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc        28 Jun  5 02:20 wrapper_checkpoint.txt
[2025-06-05 02:20:20] -rw-r--r--. 1 boinc boinc     20493 Jun  5 02:20 stderr.txt
[2025-06-05 02:20:21] HITS file was successfully produced:
[2025-06-05 02:20:21] -rw-------. 1 boinc boinc 178440543 Jun  5 02:12 shared/HITS.pool.root.1
[2025-06-05 02:20:21]  *** Contents of shared directory: ***
[2025-06-05 02:20:21] total 386392
[2025-06-05 02:20:21] -rw-r--r--. 2 boinc boinc 215094398 Jun  4 22:14 ATLAS.root_0
[2025-06-05 02:20:21] -rw-r--r--. 2 boinc boinc     15093 Jun  4 22:14 start_atlas.sh
[2025-06-05 02:20:21] -rw-r--r--. 2 boinc boinc    508879 Jun  4 22:14 input.tar.gz
[2025-06-05 02:20:21] -rw-------. 1 boinc boinc 178440543 Jun  5 02:12 HITS.pool.root.1
[2025-06-05 02:20:21] -rw-------. 1 boinc boinc   1597440 Jun  5 02:15 result.tar.gz
02:20:22 (15161): run_atlas exited; CPU time 51177.518946
02:20:22 (15161): called boinc_finish(0)

</stderr_txt>
]]>

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