Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:06:06 (11730): wrapper (7.7.26015): starting
00:06:06 (11730): wrapper: running run_atlas (--nthreads 8)
[2025-06-05 00:06:06] Arguments: --nthreads 8
[2025-06-05 00:06:06] Threads: 8
[2025-06-05 00:06:06] Checking for CVMFS
[2025-06-05 00:06:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 00:06:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 00:06:07] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 00:06:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 00:06:08] 2.11.2.0 22848 33912 101312 146795 2 158 20759407 25165825 3568 130560 0 18227973 99.831 18515755 2538 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-06-05 00:06:08] CVMFS is ok
[2025-06-05 00:06:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:06:08] Checking for apptainer binary...
[2025-06-05 00:06:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-05 00:06:08] Running /usr/bin/apptainer --version
[2025-06-05 00:06:08] apptainer version 1.3.2-1.el7
[2025-06-05 00:06:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:06:21] cg-vwn482.simple-grid.lan
[2025-06-05 00:06:21] apptainer works
[2025-06-05 00:06:21] Set ATHENA_PROC_NUMBER=8
[2025-06-05 00:06:21] Set ATHENA_CORE_NUMBER=8
[2025-06-05 00:06:21] Starting ATLAS job with PandaID=6678363827
[2025-06-05 00:06:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 04:43:58]  *** The last 200 lines of the pilot log: ***
[2025-06-05 04:43:58] 2025-06-05 01:35:47,378 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 04:43:58] 2025-06-05 01:35:47,378 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 04:43:58] 2025-06-05 01:35:47,378 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 04:43:58] 2025-06-05 01:35:47,378 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 04:43:58] 2025-06-05 01:35:47,382 | INFO     | fitting pss+swap vs Time
[2025-06-05 04:43:58] 2025-06-05 01:35:47,383 | INFO     | sum of square deviations: 2632440055.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,384 | INFO     | sum of deviations: 36342374643.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,384 | INFO     | mean x: 1749081049.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,385 | INFO     | mean y: 2437022.681372549
[2025-06-05 04:43:58] 2025-06-05 01:35:47,385 | INFO     | -- intersect: -24144649883.263447
[2025-06-05 04:43:58] 2025-06-05 01:35:47,385 | INFO     | intersect: -24144649883.263447
[2025-06-05 04:43:58] 2025-06-05 01:35:47,385 | INFO     | chi2: 2.4553438721786325
[2025-06-05 04:43:58] 2025-06-05 01:35:47,385 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | sum of deviations: 48462986894.99999
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | mean x: 1749080897.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | mean y: 2446594.7085427134
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | -- intersect: -34686681777.27681
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | intersect: -34686681777.27681
[2025-06-05 04:43:58] 2025-06-05 01:35:47,387 | INFO     | chi2: 1.6826728082436753
[2025-06-05 04:43:58] 2025-06-05 01:35:47,388 | INFO     | current chi2=1.6826728082436753 (change=31.46895523230171 %)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,393 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | sum of deviations: 46958467828.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | mean x: 1749080744.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | mean y: 2445316.9896907215
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | -- intersect: -36276253541.92547
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | intersect: -36276253541.92547
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | chi2: 1.682782321766408
[2025-06-05 04:43:58] 2025-06-05 01:35:47,395 | INFO     | current chi2=1.682782321766408 (change=-0.006508307627969754 %)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,396 | INFO     | right removable region: 193
[2025-06-05 04:43:58] 2025-06-05 01:35:47,396 | INFO     | sum of square deviations: 2443580700.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,397 | INFO     | sum of deviations: 1689295691.999998
[2025-06-05 04:43:58] 2025-06-05 01:35:47,397 | INFO     | mean x: 1749081202.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,397 | INFO     | mean y: 2464732.7788944724
[2025-06-05 04:43:58] 2025-06-05 01:35:47,397 | INFO     | -- intersect: -1206709713.3512368
[2025-06-05 04:43:58] 2025-06-05 01:35:47,398 | INFO     | intersect: -1206709713.3512368
[2025-06-05 04:43:58] 2025-06-05 01:35:47,398 | INFO     | chi2: 0.8563384066462559
[2025-06-05 04:43:58] 2025-06-05 01:35:47,398 | INFO     | current chi2=0.8563384066462559 (change=65.12348366559245 %)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,398 | INFO     | sum of square deviations: 2263977332.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | sum of deviations: -5682688508.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | mean x: 1749081354.5
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | mean y: 2470997.783505155
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | -- intersect: 4392746629.120563
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | intersect: 4392746629.120563
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | chi2: 0.795872617370361
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | current chi2=0.795872617370361 (change=7.060968982192659 %)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,400 | INFO     | left removable region: 20
[2025-06-05 04:43:58] 2025-06-05 01:35:47,401 | INFO     | sum of square deviations: 1605470102.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | sum of deviations: 3489202135.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | mean x: 1749081324.0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | mean y: 2484456.12716763
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | -- intersect: -3798830985.6159053
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | intersect: -3798830985.6159053
[2025-06-05 04:43:58] 2025-06-05 01:35:47,402 | INFO     | chi2: 0.00031163425566990173
[2025-06-05 04:43:58] 2025-06-05 01:35:47,403 | INFO     | -- intersect: -3798830985.6159053
[2025-06-05 04:43:58] 2025-06-05 01:35:47,403 | INFO     | current memory leak: 2.17 B/s (using 173 data points, chi2=0.00)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | ..............................
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . Timing measurements:
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . get job = 0 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . initial setup = 2 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . payload setup = 14 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . stage-in = 0 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . payload execution = 12413 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . stage-out = 3 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | . log creation = 1 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,404 | INFO     | ..............................
[2025-06-05 04:43:58] 2025-06-05 01:35:47,539 | INFO     | 
[2025-06-05 04:43:58] 2025-06-05 01:35:47,539 | INFO     | job summary report
[2025-06-05 04:43:58] 2025-06-05 01:35:47,539 | INFO     | --------------------------------------------------
[2025-06-05 04:43:58] 2025-06-05 01:35:47,539 | INFO     | PanDA job id: 6678363827
[2025-06-05 04:43:58] 2025-06-05 01:35:47,539 | INFO     | task id: 45006595
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | errors: (none)
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | pilot state: finished 
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | transexitcode: 0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | exeerrorcode: 0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | exeerrordiag: 
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | exitcode: 0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | exitmsg: OK
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | cpuconsumptiontime: 45988 s
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | nevents: 400
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | neventsw: 0
[2025-06-05 04:43:58] 2025-06-05 01:35:47,540 | INFO     | pid: 24034
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | pgrp: 24034
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | corecount: 8
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | event service: False
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | sizes: {0: 2397171, 1: 2397370, 9: 2397576, 12: 2397604, 12431: 2426672, 12432: 2426671, 12436: 2435796, 12438: 2435852, 12525: 2436022}
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | --------------------------------------------------
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | 
[2025-06-05 04:43:58] 2025-06-05 01:35:47,541 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-06-05 04:43:58] 2025-06-05 01:35:48,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | job 6678363827 has completed (purged errors)
[2025-06-05 04:43:58] 2025-06-05 01:35:48,029 | INFO     | overall cleanup function is called
[2025-06-05 04:43:58] 2025-06-05 01:35:49,039 | INFO     | --- collectZombieJob: --- 10, [24034]
[2025-06-05 04:43:58] 2025-06-05 01:35:49,039 | INFO     | zombie collector waiting for pid 24034
[2025-06-05 04:43:58] 2025-06-05 01:35:49,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 04:43:58] 2025-06-05 01:35:49,039 | INFO     | collected zombie processes
[2025-06-05 04:43:58] 2025-06-05 01:35:49,039 | INFO     | will attempt to kill all subprocesses of pid=24034
[2025-06-05 04:43:58] 2025-06-05 01:35:49,134 | INFO     | process IDs to be killed: [24034] (in reverse order)
[2025-06-05 04:43:58] 2025-06-05 01:35:49,462 | INFO     | 12552s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-05 04:43:58] 2025-06-05 01:35:49,779 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 04:43:58] 2025-06-05 01:35:49,779 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 04:43:58] 2025-06-05 01:35:49,782 | INFO     | did not find any defunct processes belonging to 24034
[2025-06-05 04:43:58] 2025-06-05 01:35:49,785 | INFO     | did not find any defunct processes belonging to 24034
[2025-06-05 04:43:58] 2025-06-05 01:35:49,786 | INFO     | ready for new job
[2025-06-05 04:43:58] 2025-06-05 01:35:49,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 04:43:58] 2025-06-05 01:35:49,794 | INFO     | **************************************
[2025-06-05 04:43:58] 2025-06-05 01:35:49,794 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 04:43:58] 2025-06-05 01:35:49,794 | INFO     | **************************************
[2025-06-05 04:43:58] 2025-06-05 01:35:49,794 | INFO     | 
[2025-06-05 04:43:58] 2025-06-05 01:35:49,795 | INFO     | pilot is running in a VM
[2025-06-05 04:43:58] 2025-06-05 01:35:49,795 | INFO     | architecture information:
[2025-06-05 04:43:58] 2025-06-05 01:35:49,796 | INFO     | executing command: cat /etc/os-release
[2025-06-05 04:43:58] 2025-06-05 01:35:50,064 | INFO     | cat /etc/os-release:
[2025-06-05 04:43:58] NAME="CentOS Linux"
[2025-06-05 04:43:58] VERSION="7 (Core)"
[2025-06-05 04:43:58] ID="centos"
[2025-06-05 04:43:58] ID_LIKE="rhel fedora"
[2025-06-05 04:43:58] VERSION_ID="7"
[2025-06-05 04:43:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 04:43:58] ANSI_COLOR="0;31"
[2025-06-05 04:43:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 04:43:58] HOME_URL="https://www.centos.org/"
[2025-06-05 04:43:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 04:43:58] 
[2025-06-05 04:43:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 04:43:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 04:43:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 04:43:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 04:43:58] 
[2025-06-05 04:43:58] 2025-06-05 01:35:50,064 | INFO     | **************************************
[2025-06-05 04:43:58] 2025-06-05 01:35:50,568 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-06-05 04:43:58] 2025-06-05 01:35:50,795 | INFO     | sufficient remaining disk space (497274585088 B)
[2025-06-05 04:43:58] 2025-06-05 01:35:50,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 04:43:58] 2025-06-05 01:35:50,796 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 04:43:58] 2025-06-05 01:35:50,796 | INFO     | update_server=False
[2025-06-05 04:43:58] 2025-06-05 01:35:50,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 04:43:58] 2025-06-05 01:35:50,797 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:43:58] 2025-06-05 01:35:50,797 | INFO     | aborting loop
[2025-06-05 04:43:58] 2025-06-05 01:35:50,797 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 04:43:58] 2025-06-05 01:35:50,798 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 04:43:58] 2025-06-05 01:35:50,798 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 04:43:58] 2025-06-05 01:35:50,798 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 04:43:58] 2025-06-05 01:35:50,822 | INFO     | all payload control threads have been joined
[2025-06-05 04:43:58] 2025-06-05 01:35:51,112 | INFO     | all data control threads have been joined
[2025-06-05 04:43:58] 2025-06-05 01:35:51,368 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 04:43:58] 2025-06-05 01:35:51,802 | INFO     | [job] retrieve thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:51,803 | INFO     | [job] job monitor thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:51,827 | INFO     | [payload] control thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,054 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,118 | INFO     | [data] control thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,242 | INFO     | [job] validate thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,360 | INFO     | all job control threads have been joined
[2025-06-05 04:43:58] 2025-06-05 01:35:52,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 04:43:58] 2025-06-05 01:35:52,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 04:43:58] 2025-06-05 01:35:52,685 | INFO     | [data] copytool_in thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,721 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,742 | INFO     | [payload] failed_post thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:52,841 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:53,090 | INFO     | [payload] validate_post thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:53,185 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:53,366 | INFO     | [job] control thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:53,375 | INFO     | [data] copytool_out thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:53,561 | INFO     | [job] queue monitor thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:56,516 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 04:43:58] 2025-06-05 01:35:58,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140481195915072)>', '<ExcThread(monitor, started 140480461403904)>']
[2025-06-05 04:43:58] 2025-06-05 01:35:58,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 04:43:58] 2025-06-05 01:35:58,845 | INFO     | [monitor] control thread has ended
[2025-06-05 04:43:58] 2025-06-05 01:36:03,469 | INFO     | all workflow threads have been joined
[2025-06-05 04:43:58] 2025-06-05 01:36:03,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 04:43:58] 2025-06-05 01:36:03,469 | INFO     | traces error code: 0
[2025-06-05 04:43:58] 2025-06-05 01:36:03,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 04:43:58] 2025-06-05 01:36:03,925 [wrapper] ==== pilot stdout END ====
[2025-06-05 04:43:58] 2025-06-05 01:36:04,024 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 04:43:58] 2025-06-05 01:36:04,075 [wrapper] pilotpid: 15411
[2025-06-05 04:43:58] 2025-06-05 01:36:04,176 [wrapper] Pilot exit status: 0
[2025-06-05 04:43:58] 2025-06-05 01:36:04,558 [wrapper] pandaids: 6678363827
[2025-06-05 04:43:58] 2025-06-05 01:36:05,415 [wrapper] cleanup supervisor_pilot 16729 15412
[2025-06-05 04:43:58] 2025-06-05 01:36:05,531 [wrapper] Test setup, not cleaning
[2025-06-05 04:43:58] 2025-06-05 01:36:05,596 [wrapper] apfmon messages muted
[2025-06-05 04:43:58] 2025-06-05 01:36:05,633 [wrapper] ==== wrapper stdout END ====
[2025-06-05 04:43:58] 2025-06-05 01:36:05,695 [wrapper] ==== wrapper stderr END ====
[2025-06-05 04:43:58]  *** Error codes and diagnostics ***
[2025-06-05 04:43:58]     "exeErrorCode": 0,
[2025-06-05 04:43:58]     "exeErrorDiag": "",
[2025-06-05 04:43:58]     "pilotErrorCode": 0,
[2025-06-05 04:43:58]     "pilotErrorDiag": "",
[2025-06-05 04:43:58]  *** Listing of results directory ***
[2025-06-05 04:43:58] total 390648
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc    495897 Jun  4 06:58 pilot3.tar.gz
[2025-06-05 04:43:58] -rwx------. 1 boinc boinc     37140 Jun  4 07:55 runpilot2-wrapper.sh
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc      5111 Jun  4 07:55 queuedata.json
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc       100 Jun  5 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 04:43:58] -rwxr-xr-x. 1 boinc boinc      7986 Jun  5 00:06 run_atlas
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc       105 Jun  5 00:06 job.xml
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc 214829038 Jun  5 00:06 EVNT.45006593._002149.pool.root.1
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc    508881 Jun  5 00:06 input.tar.gz
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc      6391 Jun  5 00:06 init_data.xml
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:06 start_atlas.sh
[2025-06-05 04:43:58] drwxrwx--x. 2 boinc boinc        68 Jun  5 00:06 shared
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc         0 Jun  5 00:06 boinc_lockfile
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc      2525 Jun  5 00:06 pandaJob.out
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc    987032 Jun  5 00:06 agis_schedconf.cvmfs.json
[2025-06-05 04:43:58] drwx------. 4 boinc boinc      4096 Jun  5 00:06 pilot3
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc 178401567 Jun  5 03:33 HITS.45006595._053702.pool.root.1
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc       531 Jun  5 03:33 boinc_task_state.xml
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc      1017 Jun  5 03:34 memory_monitor_summary.json
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc   1598969 Jun  5 03:34 agis_ddmendpoints.agis.ALL.json
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc    383300 Jun  5 03:34 log.45006595._053702.job.log.tgz.1
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc        95 Jun  5 03:35 pilot_heartbeat.json
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc      7686 Jun  5 03:35 heartbeat.json
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc      4539 Jun  5 03:36 pilotlog.txt
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc   1104254 Jun  5 03:36 log.45006595._053702.job.log.1
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc       357 Jun  5 03:36 output.list
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc       620 Jun  5 03:36 runtime_log
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc   1505280 Jun  5 03:36 result.tar.gz
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc      8659 Jun  5 03:36 runtime_log.err
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc       657 Jun  5 03:36 Do1KDmiGwg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmdoaKDm91aYNn.diag
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc      8192 Jun  5 04:43 boinc_mmap_file
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc        28 Jun  5 04:43 wrapper_checkpoint.txt
[2025-06-05 04:43:58] -rw-r--r--. 1 boinc boinc     20522 Jun  5 04:43 stderr.txt
[2025-06-05 04:43:58] HITS file was successfully produced:
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc 178401567 Jun  5 03:33 shared/HITS.pool.root.1
[2025-06-05 04:43:58]  *** Contents of shared directory: ***
[2025-06-05 04:43:58] total 386008
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc 214829038 Jun  5 00:06 ATLAS.root_0
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc    508881 Jun  5 00:06 input.tar.gz
[2025-06-05 04:43:58] -rw-r--r--. 2 boinc boinc     15093 Jun  5 00:06 start_atlas.sh
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc 178401567 Jun  5 03:33 HITS.pool.root.1
[2025-06-05 04:43:58] -rw-------. 1 boinc boinc   1505280 Jun  5 03:36 result.tar.gz
04:44:00 (11730): run_atlas exited; CPU time 46131.538098
04:44:00 (11730): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN