Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:08:08 (2822399): wrapper (7.7.26015): starting
07:08:08 (2822399): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 07:08:08] Arguments: --nthreads 8
[2025-06-04 07:08:08] Threads: 8
[2025-06-04 07:08:08] Checking for CVMFS
[2025-06-04 07:08:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:08:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:08:08] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:08:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:08:09] 2.12.6.0 1723263 23464 82976 146778 2 107 20806175 40960000 37011 16776704 0 308859292 99.767 180272476 37331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 07:08:09] CVMFS is ok
[2025-06-04 07:08:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:08:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:08:09] Further information can be found at the LHC@home message board.
[2025-06-04 07:08:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:08:09] Checking for apptainer binary...
[2025-06-04 07:08:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:08:09] Running /usr/bin/apptainer --version
[2025-06-04 07:08:10] apptainer version 1.4.1-1.el9
[2025-06-04 07:08:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:08:10] c8-16-2.aglt2.org
[2025-06-04 07:08:10] apptainer works
[2025-06-04 07:08:10] Set ATHENA_PROC_NUMBER=8
[2025-06-04 07:08:10] Set ATHENA_CORE_NUMBER=8
[2025-06-04 07:08:10] Starting ATLAS job with PandaID=6678363847
[2025-06-04 07:08:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:06:42]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:06:42]  is_altstaged=None
[2025-06-04 08:06:42]  is_tar=False
[2025-06-04 08:06:42]  lfn=log.45006595._053722.job.log.tgz.1
[2025-06-04 08:06:42]  mtime=0
[2025-06-04 08:06:42]  protocol_id=None
[2025-06-04 08:06:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:06:42]  replicas=None
[2025-06-04 08:06:42]  scope=mc23_13p6TeV
[2025-06-04 08:06:42]  status=None
[2025-06-04 08:06:42]  status_code=0
[2025-06-04 08:06:42]  storage_token=
[2025-06-04 08:06:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6678363847/log.45006595._053722.job.log.tgz.1
[2025-06-04 08:06:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/26/log.45006595._053722.job.log.tgz.1
[2025-06-04 08:06:42]  workdir=None
[2025-06-04 08:06:42] ]
[2025-06-04 08:06:42] 2025-06-04 12:06:13,701 | INFO     | transferring file log.45006595._053722.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6678363847/log.45006595._053722.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:06:42] 2025-06-04 12:06:13,701 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6678363847/log.45006595._053722.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._053722.job
[2025-06-04 08:06:42] 2025-06-04 12:06:13,718 | INFO     | adding to output.list: log.45006595._053722.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/10/26/log.45006595._053722.job.log.tg
[2025-06-04 08:06:42] 2025-06-04 12:06:13,719 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:06:42] 2025-06-04 12:06:13,720 | INFO     | summary of transferred files:
[2025-06-04 08:06:42] 2025-06-04 12:06:13,720 | INFO     |  -- lfn=log.45006595._053722.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:06:42] 2025-06-04 12:06:13,720 | INFO     | stage-out finished correctly
[2025-06-04 08:06:42] 2025-06-04 12:06:14,662 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:06:42] 2025-06-04 12:06:15,467 | INFO     | monitor loop #254: job 0:6678363847 is in state 'finished'
[2025-06-04 08:06:42] 2025-06-04 12:06:15,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:06:42] 2025-06-04 12:06:16,172 | INFO     | job 6678363847 has state=finished
[2025-06-04 08:06:42] 2025-06-04 12:06:16,172 | INFO     | preparing for final server update for job 6678363847 in state='finished'
[2025-06-04 08:06:42] 2025-06-04 12:06:16,172 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:06:42] 2025-06-04 12:06:16,172 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:06:42] 2025-06-04 12:06:16,172 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:06:42] 2025-06-04 12:06:16,173 | INFO     | job 6678363847 has finished - writing final server update
[2025-06-04 08:06:42] 2025-06-04 12:06:16,173 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:06:42] 2025-06-04 12:06:16,191 | INFO     | executing command: lscpu
[2025-06-04 08:06:42] 2025-06-04 12:06:16,251 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:06:42] 2025-06-04 12:06:17,970 | INFO     | monitor loop #255: job 0:6678363847 is in state 'finished'
[2025-06-04 08:06:42] 2025-06-04 12:06:17,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,476 | INFO     | monitor loop #256: job 0:6678363847 is in state 'finished'
[2025-06-04 08:06:42] 2025-06-04 12:06:20,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,786 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 08:06:42] 2025-06-04 12:06:20,787 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6678363847/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,787 | INFO     | extracted standard info from prmon json
[2025-06-04 08:06:42] 2025-06-04 12:06:20,787 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:06:42] 2025-06-04 12:06:20,789 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:06:42] 2025-06-04 12:06:20,789 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:06:42] 2025-06-04 12:06:20,789 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:06:42] 2025-06-04 12:06:20,790 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:06:42] 2025-06-04 12:06:20,790 | INFO     | sum of square deviations: 36465800.0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,790 | INFO     | sum of deviations: 7783965207.0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | mean x: 1749037176.0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | mean y: 2380901.714285714
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | -- intersect: -373345921445.5134
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | intersect: -373345921445.5134
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | chi2: 0.8883750883285106
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | -- intersect: -373345921445.5134
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | current memory leak: 213.46 B/s (using 49 data points, chi2=0.89)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | ..............................
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . Timing measurements:
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . get job = 0 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . initial setup = 4 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . payload setup = 24 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . stage-in = 0 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . payload execution = 3378 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . stage-out = 2 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | . log creation = 1 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,791 | INFO     | ..............................
[2025-06-04 08:06:42] 2025-06-04 12:06:20,844 | INFO     | 
[2025-06-04 08:06:42] 2025-06-04 12:06:20,844 | INFO     | job summary report
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | --------------------------------------------------
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | PanDA job id: 6678363847
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | task id: 45006595
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | errors: (none)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | pilot state: finished 
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | transexitcode: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | exeerrorcode: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | exeerrordiag: 
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | exitcode: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | exitmsg: OK
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | cpuconsumptiontime: 19659 s
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | nevents: 400
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | neventsw: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | pid: 2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | pgrp: 2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | corecount: 8
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | event service: False
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 15: 2405446, 22: 2405474, 3404: 2431175, 3407: 2440116, 3408: 2440172, 3414: 2440342}
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | --------------------------------------------------
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | 
[2025-06-04 08:06:42] 2025-06-04 12:06:20,845 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | job 6678363847 has completed (purged errors)
[2025-06-04 08:06:42] 2025-06-04 12:06:20,867 | INFO     | overall cleanup function is called
[2025-06-04 08:06:42] 2025-06-04 12:06:21,690 | INFO     | PID=2827194 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 08:06:42] 2025-06-04 12:06:21,690 | INFO     | .. there are 47 such processes running
[2025-06-04 08:06:42] 2025-06-04 12:06:21,875 | INFO     | --- collectZombieJob: --- 10, [2839455]
[2025-06-04 08:06:42] 2025-06-04 12:06:21,875 | INFO     | zombie collector waiting for pid 2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:21,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:06:42] 2025-06-04 12:06:21,875 | INFO     | collected zombie processes
[2025-06-04 08:06:42] 2025-06-04 12:06:21,875 | INFO     | will attempt to kill all subprocesses of pid=2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:22,250 | INFO     | process IDs to be killed: [2839455] (in reverse order)
[2025-06-04 08:06:42] 2025-06-04 12:06:22,416 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:06:42] 2025-06-04 12:06:22,416 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:06:42] 2025-06-04 12:06:22,442 | INFO     | did not find any defunct processes belonging to 2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:22,465 | INFO     | did not find any defunct processes belonging to 2839455
[2025-06-04 08:06:42] 2025-06-04 12:06:22,465 | INFO     | ready for new job
[2025-06-04 08:06:42] 2025-06-04 12:06:22,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:06:42] 2025-06-04 12:06:22,466 | INFO     | **************************************
[2025-06-04 08:06:42] 2025-06-04 12:06:22,466 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:06:42] 2025-06-04 12:06:22,466 | INFO     | **************************************
[2025-06-04 08:06:42] 2025-06-04 12:06:22,466 | INFO     | 
[2025-06-04 08:06:42] 2025-06-04 12:06:22,484 | INFO     | architecture information:
[2025-06-04 08:06:42] 2025-06-04 12:06:22,484 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:06:42] 2025-06-04 12:06:22,497 | INFO     | cat /etc/os-release:
[2025-06-04 08:06:42] NAME="CentOS Linux"
[2025-06-04 08:06:42] VERSION="7 (Core)"
[2025-06-04 08:06:42] ID="centos"
[2025-06-04 08:06:42] ID_LIKE="rhel fedora"
[2025-06-04 08:06:42] VERSION_ID="7"
[2025-06-04 08:06:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:06:42] ANSI_COLOR="0;31"
[2025-06-04 08:06:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:06:42] HOME_URL="https://www.centos.org/"
[2025-06-04 08:06:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:06:42] 
[2025-06-04 08:06:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:06:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:06:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:06:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:06:42] 
[2025-06-04 08:06:42] 2025-06-04 12:06:22,497 | INFO     | **************************************
[2025-06-04 08:06:42] 2025-06-04 12:06:23,000 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:06:42] 2025-06-04 12:06:23,018 | INFO     | sufficient remaining disk space (171516624896 B)
[2025-06-04 08:06:42] 2025-06-04 12:06:23,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:06:42] 2025-06-04 12:06:23,019 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:06:42] 2025-06-04 12:06:23,019 | INFO     | update_server=False
[2025-06-04 08:06:42] 2025-06-04 12:06:23,019 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:06:42] 2025-06-04 12:06:23,429 | INFO     | all payload control threads have been joined
[2025-06-04 08:06:42] 2025-06-04 12:06:23,560 | INFO     | all data control threads have been joined
[2025-06-04 08:06:42] 2025-06-04 12:06:23,695 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:06:42] 2025-06-04 12:06:23,696 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:06:42] 2025-06-04 12:06:23,696 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:06:42] 2025-06-04 12:06:23,729 | INFO     | all job control threads have been joined
[2025-06-04 08:06:42] 2025-06-04 12:06:23,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:06:42] 2025-06-04 12:06:23,985 | INFO     | aborting loop
[2025-06-04 08:06:42] 2025-06-04 12:06:24,024 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,113 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:06:42] 2025-06-04 12:06:24,434 | INFO     | [payload] control thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,565 | INFO     | [data] control thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,578 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,601 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,735 | INFO     | [job] control thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,826 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,906 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,989 | INFO     | [job] validate thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:24,990 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:25,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:06:42] 2025-06-04 12:06:25,461 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:25,854 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:06:42] 2025-06-04 12:06:26,296 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:26,860 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:29,224 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:33,720 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:06:42] 2025-06-04 12:06:34,725 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:06:42] 2025-06-04 12:06:36,186 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139716959430464)>', '<ExcThread(monitor, started 139715839760128)>']
[2025-06-04 08:06:42] 2025-06-04 12:06:36,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:06:42] 2025-06-04 12:06:36,766 | INFO     | [monitor] control thread has ended
[2025-06-04 08:06:42] 2025-06-04 12:06:41,210 | INFO     | all workflow threads have been joined
[2025-06-04 08:06:42] 2025-06-04 12:06:41,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:06:42] 2025-06-04 12:06:41,211 | INFO     | traces error code: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:41,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:06:42] 2025-06-04 12:06:41,328 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:06:42] 2025-06-04 12:06:41,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:06:42] 2025-06-04 12:06:41,332 [wrapper] pilotpid: 2827194
[2025-06-04 08:06:42] 2025-06-04 12:06:41,334 [wrapper] Pilot exit status: 0
[2025-06-04 08:06:42] 2025-06-04 12:06:41,382 [wrapper] pandaids: 6678363847
[2025-06-04 08:06:42] 2025-06-04 12:06:41,495 [wrapper] cleanup supervisor_pilot 3171480 2827195
[2025-06-04 08:06:42] 2025-06-04 12:06:41,497 [wrapper] Test setup, not cleaning
[2025-06-04 08:06:42] 2025-06-04 12:06:41,499 [wrapper] apfmon messages muted
[2025-06-04 08:06:42] 2025-06-04 12:06:41,501 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:06:42] 2025-06-04 12:06:41,502 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:06:42]  *** Error codes and diagnostics ***
[2025-06-04 08:06:42]     "exeErrorCode": 0,
[2025-06-04 08:06:42]     "exeErrorDiag": "",
[2025-06-04 08:06:42]     "pilotErrorCode": 0,
[2025-06-04 08:06:42]     "pilotErrorDiag": "",
[2025-06-04 08:06:42]  *** Listing of results directory ***
[2025-06-04 08:06:42] total 393736
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:58 pilot3.tar.gz
[2025-06-04 08:06:42] -rwx------. 1 boincer umatlas     37140 Jun  4 01:55 runpilot2-wrapper.sh
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 01:55 queuedata.json
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas       100 Jun  4 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:06:42] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 07:08 run_atlas
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas       105 Jun  4 07:08 job.xml
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas 218048813 Jun  4 07:08 EVNT.45006593._002150.pool.root.1
[2025-06-04 08:06:42] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 07:08 shared
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 07:08 input.tar.gz
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:08 start_atlas.sh
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas         0 Jun  4 07:08 boinc_lockfile
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 07:08 pandaJob.out
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas    986812 Jun  4 07:08 agis_schedconf.cvmfs.json
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas   1603667 Jun  4 07:08 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:06:42] drwx------. 4 boincer umatlas      4096 Jun  4 07:08 pilot3
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas      7160 Jun  4 08:02 init_data.xml
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas 180029802 Jun  4 08:05 HITS.45006595._053722.pool.root.1
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas       530 Jun  4 08:05 boinc_task_state.xml
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas        95 Jun  4 08:05 pilot_heartbeat.json
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas      1046 Jun  4 08:06 memory_monitor_summary.json
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas    291530 Jun  4 08:06 log.45006595._053722.job.log.tgz.1
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas      7720 Jun  4 08:06 heartbeat.json
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 08:06 boinc_mmap_file
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas        27 Jun  4 08:06 wrapper_checkpoint.txt
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas      4426 Jun  4 08:06 pilotlog.txt
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas    347133 Jun  4 08:06 log.45006595._053722.job.log.1
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas       357 Jun  4 08:06 output.list
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas       620 Jun  4 08:06 runtime_log
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas    655360 Jun  4 08:06 result.tar.gz
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas      8654 Jun  4 08:06 runtime_log.err
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas       656 Jun  4 08:06 loMLDmiGwg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtoaKDmVuIQFm.diag
[2025-06-04 08:06:42] -rw-r--r--. 1 boincer umatlas     21488 Jun  4 08:06 stderr.txt
[2025-06-04 08:06:42] HITS file was successfully produced:
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas 180029802 Jun  4 08:05 shared/HITS.pool.root.1
[2025-06-04 08:06:42]  *** Contents of shared directory: ***
[2025-06-04 08:06:42] total 389912
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas 218048813 Jun  4 07:08 ATLAS.root_0
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas    508884 Jun  4 07:08 input.tar.gz
[2025-06-04 08:06:42] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 07:08 start_atlas.sh
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas 180029802 Jun  4 08:05 HITS.pool.root.1
[2025-06-04 08:06:42] -rw-------. 1 boincer umatlas    655360 Jun  4 08:06 result.tar.gz
08:06:44 (2822399): run_atlas exited; CPU time 19748.375967
08:06:44 (2822399): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN