Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:11:16 (193829): wrapper (7.7.26015): starting
07:11:16 (193829): wrapper: running run_atlas (--nthreads 9)
[2025-06-04 07:11:16] Arguments: --nthreads 9
[2025-06-04 07:11:16] Threads: 9
[2025-06-04 07:11:16] Checking for CVMFS
[2025-06-04 07:11:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 07:11:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 07:11:16] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 07:11:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 07:11:17] 2.11.2.0 6489 28706 268396 146778 2 63 15595406 18432001 5579 130560 1 66400918 99.415 81223445 29372 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-06-04 07:11:17] CVMFS is ok
[2025-06-04 07:11:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 07:11:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 07:11:17] Further information can be found at the LHC@home message board.
[2025-06-04 07:11:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 07:11:17] Checking for apptainer binary...
[2025-06-04 07:11:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 07:11:17] Running /usr/bin/apptainer --version
[2025-06-04 07:11:17] apptainer version 1.3.2-1.el7
[2025-06-04 07:11:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 07:11:18] c-210-31-2.aglt2.org
[2025-06-04 07:11:18] apptainer works
[2025-06-04 07:11:18] Set ATHENA_PROC_NUMBER=9
[2025-06-04 07:11:18] Set ATHENA_CORE_NUMBER=9
[2025-06-04 07:11:18] Starting ATLAS job with PandaID=6679023377
[2025-06-04 07:11:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 08:18:29]  *** The last 200 lines of the pilot log: ***
[2025-06-04 08:18:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 08:18:29]  is_altstaged=None
[2025-06-04 08:18:29]  is_tar=False
[2025-06-04 08:18:29]  lfn=log.45006595._055782.job.log.tgz.1
[2025-06-04 08:18:29]  mtime=0
[2025-06-04 08:18:29]  protocol_id=None
[2025-06-04 08:18:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 08:18:29]  replicas=None
[2025-06-04 08:18:29]  scope=mc23_13p6TeV
[2025-06-04 08:18:29]  status=None
[2025-06-04 08:18:29]  status_code=0
[2025-06-04 08:18:29]  storage_token=
[2025-06-04 08:18:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6679023377/log.45006595._055782.job.log.tgz.1
[2025-06-04 08:18:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/4d/log.45006595._055782.job.log.tgz.1
[2025-06-04 08:18:29]  workdir=None
[2025-06-04 08:18:29] ]
[2025-06-04 08:18:29] 2025-06-04 12:18:06,338 | INFO     | transferring file log.45006595._055782.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6679023377/log.45006595._055782.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 08:18:29] 2025-06-04 12:18:06,338 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6679023377/log.45006595._055782.job.log.tgz.1 /tmp/boinchome/slots/0/log.45006595._055782.job
[2025-06-04 08:18:29] 2025-06-04 12:18:06,361 | INFO     | adding to output.list: log.45006595._055782.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/4d/log.45006595._055782.job.log.tg
[2025-06-04 08:18:29] 2025-06-04 12:18:06,362 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 08:18:29] 2025-06-04 12:18:06,362 | INFO     | summary of transferred files:
[2025-06-04 08:18:29] 2025-06-04 12:18:06,362 | INFO     |  -- lfn=log.45006595._055782.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 08:18:29] 2025-06-04 12:18:06,362 | INFO     | stage-out finished correctly
[2025-06-04 08:18:29] 2025-06-04 12:18:06,427 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 08:18:29] 2025-06-04 12:18:06,481 | INFO     | job 6679023377 has state=finished
[2025-06-04 08:18:29] 2025-06-04 12:18:06,481 | INFO     | preparing for final server update for job 6679023377 in state='finished'
[2025-06-04 08:18:29] 2025-06-04 12:18:06,482 | INFO     | this job has now completed (state=finished)
[2025-06-04 08:18:29] 2025-06-04 12:18:06,482 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 08:18:29] 2025-06-04 12:18:06,482 | INFO     | log transfer has been attempted: DONE
[2025-06-04 08:18:29] 2025-06-04 12:18:06,482 | INFO     | job 6679023377 has finished - writing final server update
[2025-06-04 08:18:29] 2025-06-04 12:18:06,482 | INFO     | total number of processed events: 400 (read)
[2025-06-04 08:18:29] 2025-06-04 12:18:06,485 | INFO     | executing command: lscpu
[2025-06-04 08:18:29] 2025-06-04 12:18:06,528 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 08:18:29] 2025-06-04 12:18:08,377 | WARNING  | process 203826 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 08:18:29] 2025-06-04 12:18:08,377 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679023377/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:18:29] 2025-06-04 12:18:08,493 | INFO     | number of running child processes to parent process 203826: 1
[2025-06-04 08:18:29] 2025-06-04 12:18:08,493 | INFO     | maximum number of monitored processes: 6
[2025-06-04 08:18:29] 2025-06-04 12:18:10,816 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-04 08:18:29] 2025-06-04 12:18:10,816 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6679023377/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 08:18:29] 2025-06-04 12:18:10,817 | INFO     | extracted standard info from prmon json
[2025-06-04 08:18:29] 2025-06-04 12:18:10,817 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 08:18:29] 2025-06-04 12:18:10,817 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 08:18:29] 2025-06-04 12:18:10,818 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 08:18:29] 2025-06-04 12:18:10,818 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 08:18:29] 2025-06-04 12:18:10,819 | INFO     | fitting pss+swap vs Time
[2025-06-04 08:18:29] 2025-06-04 12:18:10,819 | INFO     | sum of square deviations: 60482994.5
[2025-06-04 08:18:29] 2025-06-04 12:18:10,819 | INFO     | sum of deviations: 4488318.999999989
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | mean x: 1749037562.5
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | mean y: 2531537.724137931
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | -- intersect: -127260953.34510665
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | intersect: -127260953.34510665
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | chi2: 0.008259116462985562
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | -- intersect: -127260953.34510665
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | current memory leak: 0.07 B/s (using 58 data points, chi2=0.01)
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | ..............................
[2025-06-04 08:18:29] 2025-06-04 12:18:10,820 | INFO     | . Timing measurements:
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . get job = 0 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . initial setup = 2 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . payload setup = 8 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . stage-in = 0 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . payload execution = 3968 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . stage-out = 0 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | . log creation = 0 s
[2025-06-04 08:18:29] 2025-06-04 12:18:10,821 | INFO     | ..............................
[2025-06-04 08:18:29] 2025-06-04 12:18:11,345 | INFO     | 
[2025-06-04 08:18:29] 2025-06-04 12:18:11,345 | INFO     | job summary report
[2025-06-04 08:18:29] 2025-06-04 12:18:11,345 | INFO     | --------------------------------------------------
[2025-06-04 08:18:29] 2025-06-04 12:18:11,345 | INFO     | PanDA job id: 6679023377
[2025-06-04 08:18:29] 2025-06-04 12:18:11,345 | INFO     | task id: 45006595
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | errors: (none)
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | pilot state: finished 
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | transexitcode: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | exeerrorcode: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | exeerrordiag: 
[2025-06-04 08:18:29] 2025-06-04 12:18:11,346 | INFO     | exitcode: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | exitmsg: OK
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | cpuconsumptiontime: 32212 s
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | nevents: 400
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | neventsw: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | pid: 203826
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | pgrp: 203826
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | corecount: 9
[2025-06-04 08:18:29] 2025-06-04 12:18:11,347 | INFO     | event service: False
[2025-06-04 08:18:29] 2025-06-04 12:18:11,348 | INFO     | sizes: {0: 2405131, 5: 2405337, 11: 2405393, 3980: 2431094, 3981: 2440091, 3985: 2440205}
[2025-06-04 08:18:29] 2025-06-04 12:18:11,348 | INFO     | --------------------------------------------------
[2025-06-04 08:18:29] 2025-06-04 12:18:11,348 | INFO     | 
[2025-06-04 08:18:29] 2025-06-04 12:18:11,348 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,376 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 08:18:29] 2025-06-04 12:18:11,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 08:18:29] 2025-06-04 12:18:11,376 | INFO     | job 6679023377 has completed (purged errors)
[2025-06-04 08:18:29] 2025-06-04 12:18:11,376 | INFO     | overall cleanup function is called
[2025-06-04 08:18:29] 2025-06-04 12:18:12,384 | INFO     | --- collectZombieJob: --- 10, [203826]
[2025-06-04 08:18:29] 2025-06-04 12:18:12,384 | INFO     | zombie collector waiting for pid 203826
[2025-06-04 08:18:29] 2025-06-04 12:18:12,384 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 08:18:29] 2025-06-04 12:18:12,384 | INFO     | collected zombie processes
[2025-06-04 08:18:29] 2025-06-04 12:18:12,384 | INFO     | will attempt to kill all subprocesses of pid=203826
[2025-06-04 08:18:29] 2025-06-04 12:18:12,506 | INFO     | process IDs to be killed: [203826] (in reverse order)
[2025-06-04 08:18:29] 2025-06-04 12:18:12,572 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 08:18:29] 2025-06-04 12:18:12,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 08:18:29] 2025-06-04 12:18:12,577 | INFO     | did not find any defunct processes belonging to 203826
[2025-06-04 08:18:29] 2025-06-04 12:18:12,580 | INFO     | did not find any defunct processes belonging to 203826
[2025-06-04 08:18:29] 2025-06-04 12:18:12,580 | INFO     | ready for new job
[2025-06-04 08:18:29] 2025-06-04 12:18:12,580 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 08:18:29] 2025-06-04 12:18:12,581 | INFO     | **************************************
[2025-06-04 08:18:29] 2025-06-04 12:18:12,581 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 08:18:29] 2025-06-04 12:18:12,581 | INFO     | **************************************
[2025-06-04 08:18:29] 2025-06-04 12:18:12,581 | INFO     | 
[2025-06-04 08:18:29] 2025-06-04 12:18:12,583 | INFO     | architecture information:
[2025-06-04 08:18:29] 2025-06-04 12:18:12,583 | INFO     | executing command: cat /etc/os-release
[2025-06-04 08:18:29] 2025-06-04 12:18:12,602 | INFO     | cat /etc/os-release:
[2025-06-04 08:18:29] NAME="CentOS Linux"
[2025-06-04 08:18:29] VERSION="7 (Core)"
[2025-06-04 08:18:29] ID="centos"
[2025-06-04 08:18:29] ID_LIKE="rhel fedora"
[2025-06-04 08:18:29] VERSION_ID="7"
[2025-06-04 08:18:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 08:18:29] ANSI_COLOR="0;31"
[2025-06-04 08:18:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 08:18:29] HOME_URL="https://www.centos.org/"
[2025-06-04 08:18:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 08:18:29] 
[2025-06-04 08:18:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 08:18:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 08:18:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 08:18:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 08:18:29] 
[2025-06-04 08:18:29] 2025-06-04 12:18:12,602 | INFO     | **************************************
[2025-06-04 08:18:29] 2025-06-04 12:18:13,105 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-06-04 08:18:29] 2025-06-04 12:18:13,128 | INFO     | sufficient remaining disk space (56308531200 B)
[2025-06-04 08:18:29] 2025-06-04 12:18:13,129 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 08:18:29] 2025-06-04 12:18:13,129 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 08:18:29] 2025-06-04 12:18:13,129 | INFO     | update_server=False
[2025-06-04 08:18:29] 2025-06-04 12:18:13,129 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 08:18:29] 2025-06-04 12:18:13,130 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 08:18:29] 2025-06-04 12:18:13,130 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 08:18:29] 2025-06-04 12:18:13,131 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 08:18:29] 2025-06-04 12:18:13,131 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 08:18:29] 2025-06-04 12:18:13,131 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 08:18:29] 2025-06-04 12:18:13,491 | INFO     | all job control threads have been joined
[2025-06-04 08:18:29] 2025-06-04 12:18:13,500 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-04 08:18:29] 2025-06-04 12:18:13,500 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-04 08:18:29] 2025-06-04 12:18:13,500 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:18:29] 2025-06-04 12:18:13,500 | INFO     | will abort loop
[2025-06-04 08:18:29] 2025-06-04 12:18:14,077 | INFO     | all data control threads have been joined
[2025-06-04 08:18:29] 2025-06-04 12:18:14,131 | INFO     | [job] retrieve thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,136 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,217 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,416 | INFO     | all payload control threads have been joined
[2025-06-04 08:18:29] 2025-06-04 12:18:14,425 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 08:18:29] 2025-06-04 12:18:14,496 | INFO     | [job] control thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,505 | INFO     | [job] job monitor thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,532 | INFO     | [data] copytool_in thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:14,783 | INFO     | [payload] validate_post thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,079 | INFO     | [data] control thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,143 | INFO     | [payload] failed_post thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,315 | INFO     | [job] validate thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,394 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,420 | INFO     | [payload] control thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:15,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 08:18:29] 2025-06-04 12:18:16,430 | INFO     | [data] copytool_out thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:16,901 | INFO     | [job] queue monitor thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:17,136 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:23,290 | INFO     | job.realtimelogging is not enabled
[2025-06-04 08:18:29] 2025-06-04 12:18:24,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 08:18:29] 2025-06-04 12:18:24,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140444905338688)>', '<ExcThread(monitor, started 140444340049664)>']
[2025-06-04 08:18:29] 2025-06-04 12:18:25,188 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 08:18:29] 2025-06-04 12:18:25,188 | INFO     | [monitor] control thread has ended
[2025-06-04 08:18:29] 2025-06-04 12:18:29,634 | INFO     | all workflow threads have been joined
[2025-06-04 08:18:29] 2025-06-04 12:18:29,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 08:18:29] 2025-06-04 12:18:29,634 | INFO     | traces error code: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:29,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 08:18:29] 2025-06-04 12:18:29,725 [wrapper] ==== pilot stdout END ====
[2025-06-04 08:18:29] 2025-06-04 12:18:29,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 08:18:29] 2025-06-04 12:18:29,732 [wrapper] pilotpid: 197408
[2025-06-04 08:18:29] 2025-06-04 12:18:29,736 [wrapper] Pilot exit status: 0
[2025-06-04 08:18:29] 2025-06-04 12:18:29,745 [wrapper] pandaids: 6679023377
[2025-06-04 08:18:29] 2025-06-04 12:18:29,788 [wrapper] cleanup supervisor_pilot  16689 197409
[2025-06-04 08:18:29] 2025-06-04 12:18:29,791 [wrapper] Test setup, not cleaning
[2025-06-04 08:18:29] 2025-06-04 12:18:29,794 [wrapper] apfmon messages muted
[2025-06-04 08:18:29] 2025-06-04 12:18:29,797 [wrapper] ==== wrapper stdout END ====
[2025-06-04 08:18:29] 2025-06-04 12:18:29,800 [wrapper] ==== wrapper stderr END ====
[2025-06-04 08:18:29]  *** Error codes and diagnostics ***
[2025-06-04 08:18:29]     "exeErrorCode": 0,
[2025-06-04 08:18:29]     "exeErrorDiag": "",
[2025-06-04 08:18:29]     "pilotErrorCode": 0,
[2025-06-04 08:18:29]     "pilotErrorDiag": "",
[2025-06-04 08:18:29]  *** Listing of results directory ***
[2025-06-04 08:18:29] total 393364
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas    495897 Jun  4 04:31 pilot3.tar.gz
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas      5111 Jun  4 04:43 queuedata.json
[2025-06-04 08:18:29] -rwx------ 1 boincer umatlas     37140 Jun  4 04:43 runpilot2-wrapper.sh
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas       100 Jun  4 07:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 08:18:29] -rwxr-xr-x 1 boincer umatlas      7986 Jun  4 07:11 run_atlas
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas       105 Jun  4 07:11 job.xml
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas 215330264 Jun  4 07:11 EVNT.45006593._000883.pool.root.1
[2025-06-04 08:18:29] drwxrwx--x 2 boincer umatlas      4096 Jun  4 07:11 shared
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 07:11 input.tar.gz
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:11 start_atlas.sh
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas         0 Jun  4 07:11 boinc_lockfile
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas      2523 Jun  4 07:11 pandaJob.out
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas    986812 Jun  4 07:11 agis_schedconf.cvmfs.json
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas   1603667 Jun  4 07:11 agis_ddmendpoints.agis.ALL.json
[2025-06-04 08:18:29] drwx------ 4 boincer umatlas      4096 Jun  4 07:11 pilot3
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas      6355 Jun  4 08:12 init_data.xml
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas        95 Jun  4 08:17 pilot_heartbeat.json
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas 182183080 Jun  4 08:17 HITS.45006595._055782.pool.root.1
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas       530 Jun  4 08:17 boinc_task_state.xml
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas      1064 Jun  4 08:18 memory_monitor_summary.json
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas    326281 Jun  4 08:18 log.45006595._055782.job.log.tgz.1
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas      7741 Jun  4 08:18 heartbeat.json
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas        27 Jun  4 08:18 wrapper_checkpoint.txt
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas      8192 Jun  4 08:18 boinc_mmap_file
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas      4734 Jun  4 08:18 pilotlog.txt
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas    404542 Jun  4 08:18 log.45006595._055782.job.log.1
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas       357 Jun  4 08:18 output.list
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas       620 Jun  4 08:18 runtime_log
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas    747520 Jun  4 08:18 result.tar.gz
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas      8669 Jun  4 08:18 runtime_log.err
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas       659 Jun  4 08:18 aWQMDm0tyg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmyaKDm5FKDVn.diag
[2025-06-04 08:18:29] -rw-r--r-- 1 boincer umatlas     21312 Jun  4 08:18 stderr.txt
[2025-06-04 08:18:29] HITS file was successfully produced:
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas 182183080 Jun  4 08:17 shared/HITS.pool.root.1
[2025-06-04 08:18:29]  *** Contents of shared directory: ***
[2025-06-04 08:18:29] total 389452
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas 215330264 Jun  4 07:11 ATLAS.root_0
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas    508884 Jun  4 07:11 input.tar.gz
[2025-06-04 08:18:29] -rw-r--r-- 2 boincer umatlas     15093 Jun  4 07:11 start_atlas.sh
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas 182183080 Jun  4 08:17 HITS.pool.root.1
[2025-06-04 08:18:29] -rw------- 1 boincer umatlas    747520 Jun  4 08:18 result.tar.gz
08:18:31 (193829): run_atlas exited; CPU time 32231.680419
08:18:31 (193829): called boinc_finish(0)

</stderr_txt>
]]>

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