Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:53:14 (1229862): wrapper (7.7.26015): starting
16:53:14 (1229862): wrapper: running run_atlas (--nthreads 12)
[2025-06-05 16:53:14] Arguments: --nthreads 12
[2025-06-05 16:53:14] Threads: 12
[2025-06-05 16:53:14] Checking for CVMFS
[2025-06-05 16:53:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-05 16:53:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-05 16:53:15] Running cvmfs_config stat atlas.cern.ch
[2025-06-05 16:53:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-05 16:53:17] 2.12.7.0 16016 3446 62660 146826 2 56 2427630 4096001 912 130560 0 3279581 99.992 864352 141 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-06-05 16:53:17] CVMFS is ok
[2025-06-05 16:53:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 16:53:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-06-05 16:53:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-06-05 16:53:17] Further information can be found at the LHC@home message board.
[2025-06-05 16:53:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 16:53:17] Checking for apptainer binary...
[2025-06-05 16:53:17] apptainer is not installed, using version from CVMFS
[2025-06-05 16:53:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 16:53:18] g3250
[2025-06-05 16:53:18] apptainer works
[2025-06-05 16:53:18] Set ATHENA_PROC_NUMBER=12
[2025-06-05 16:53:18] Set ATHENA_CORE_NUMBER=12
[2025-06-05 16:53:19] Starting ATLAS job with PandaID=6678363840
[2025-06-05 16:53:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 19:46:18]  *** The last 200 lines of the pilot log: ***
[2025-06-05 19:46:18] 2025-06-05 19:45:56,759 | INFO     | monitor loop #798: job 0:6678363840 is in state 'finished'
[2025-06-05 19:46:18] 2025-06-05 19:45:56,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,266 | INFO     | monitor loop #799: job 0:6678363840 is in state 'finished'
[2025-06-05 19:46:18] 2025-06-05 19:45:59,267 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,611 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-05 19:46:18] 2025-06-05 19:45:59,611 | INFO     | using path: /opt/boinc/instance_homes/boinc_31417/slots/2/PanDA_Pilot-6678363840/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,612 | INFO     | extracted standard info from prmon json
[2025-06-05 19:46:18] 2025-06-05 19:45:59,612 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 19:46:18] 2025-06-05 19:45:59,612 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 19:46:18] 2025-06-05 19:45:59,612 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 19:46:18] 2025-06-05 19:45:59,612 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 19:46:18] 2025-06-05 19:45:59,615 | INFO     | fitting pss+swap vs Time
[2025-06-05 19:46:18] 2025-06-05 19:45:59,615 | INFO     | sum of square deviations: 1418361477.5
[2025-06-05 19:46:18] 2025-06-05 19:45:59,616 | INFO     | sum of deviations: 12344026428.999998
[2025-06-05 19:46:18] 2025-06-05 19:45:59,616 | INFO     | mean x: 1749147635.5
[2025-06-05 19:46:18] 2025-06-05 19:45:59,616 | INFO     | mean y: 2639890.421686747
[2025-06-05 19:46:18] 2025-06-05 19:45:59,617 | INFO     | -- intersect: -15220224649.647476
[2025-06-05 19:46:18] 2025-06-05 19:45:59,617 | INFO     | intersect: -15220224649.647476
[2025-06-05 19:46:18] 2025-06-05 19:45:59,617 | INFO     | chi2: 3.055957611767797
[2025-06-05 19:46:18] 2025-06-05 19:45:59,617 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,618 | INFO     | sum of deviations: 23064623319.000008
[2025-06-05 19:46:18] 2025-06-05 19:45:59,618 | INFO     | mean x: 1749147483.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,618 | INFO     | mean y: 2652703.782608696
[2025-06-05 19:46:18] 2025-06-05 19:45:59,626 | INFO     | -- intersect: -31174288113.634193
[2025-06-05 19:46:18] 2025-06-05 19:45:59,627 | INFO     | intersect: -31174288113.634193
[2025-06-05 19:46:18] 2025-06-05 19:45:59,627 | INFO     | chi2: 2.3726333964393684
[2025-06-05 19:46:18] 2025-06-05 19:45:59,627 | INFO     | current chi2=2.3726333964393684 (change=22.360395729872128 %)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,627 | INFO     | right removable region: 160
[2025-06-05 19:46:18] 2025-06-05 19:45:59,627 | INFO     | sum of square deviations: 1294014960.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,628 | INFO     | sum of deviations: -24739958490.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,628 | INFO     | mean x: 1749147788.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,628 | INFO     | mean y: 2684974.1242236025
[2025-06-05 19:46:18] 2025-06-05 19:45:59,629 | INFO     | -- intersect: 33444217727.34318
[2025-06-05 19:46:18] 2025-06-05 19:45:59,629 | INFO     | intersect: 33444217727.34318
[2025-06-05 19:46:18] 2025-06-05 19:45:59,629 | INFO     | chi2: 0.9578903895859554
[2025-06-05 19:46:18] 2025-06-05 19:45:59,629 | INFO     | current chi2=0.9578903895859554 (change=68.65498441806464 %)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,629 | INFO     | sum of square deviations: 1177156955.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,630 | INFO     | sum of deviations: -29395231653.499992
[2025-06-05 19:46:18] 2025-06-05 19:45:59,630 | INFO     | mean x: 1749147940.5
[2025-06-05 19:46:18] 2025-06-05 19:45:59,630 | INFO     | mean y: 2691006.6346153845
[2025-06-05 19:46:18] 2025-06-05 19:45:59,634 | INFO     | -- intersect: 43681325948.93925
[2025-06-05 19:46:18] 2025-06-05 19:45:59,635 | INFO     | intersect: 43681325948.93925
[2025-06-05 19:46:18] 2025-06-05 19:45:59,635 | INFO     | chi2: 0.9018912153059593
[2025-06-05 19:46:18] 2025-06-05 19:45:59,635 | INFO     | current chi2=0.9018912153059593 (change=5.8460941762033505 %)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,635 | INFO     | left removable region: 20
[2025-06-05 19:46:18] 2025-06-05 19:45:59,635 | INFO     | sum of square deviations: 850825255.0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,636 | INFO     | sum of deviations: -3676602644.5
[2025-06-05 19:46:18] 2025-06-05 19:45:59,636 | INFO     | mean x: 1749148062.5
[2025-06-05 19:46:18] 2025-06-05 19:45:59,636 | INFO     | mean y: 2684153.55
[2025-06-05 19:46:18] 2025-06-05 19:45:59,636 | INFO     | -- intersect: 7561136790.466086
[2025-06-05 19:46:18] 2025-06-05 19:45:59,636 | INFO     | intersect: 7561136790.466086
[2025-06-05 19:46:18] 2025-06-05 19:45:59,637 | INFO     | chi2: 0.08406862328582523
[2025-06-05 19:46:18] 2025-06-05 19:45:59,637 | INFO     | -- intersect: 7561136790.466086
[2025-06-05 19:46:18] 2025-06-05 19:45:59,637 | INFO     | current memory leak: -4.32 B/s (using 140 data points, chi2=0.08)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,637 | INFO     | ..............................
[2025-06-05 19:46:18] 2025-06-05 19:45:59,637 | INFO     | . Timing measurements:
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . get job = 0 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . initial setup = 5 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . payload setup = 49 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . stage-in = 0 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . payload execution = 10101 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . stage-out = 1 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | . log creation = 0 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,638 | INFO     | ..............................
[2025-06-05 19:46:18] 2025-06-05 19:45:59,770 | INFO     | 
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | job summary report
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | --------------------------------------------------
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | PanDA job id: 6678363840
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | task id: 45006595
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | errors: (none)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | pilot state: finished 
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | transexitcode: 0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | exeerrorcode: 0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | exeerrordiag: 
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | exitcode: 0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | exitmsg: OK
[2025-06-05 19:46:18] 2025-06-05 19:45:59,771 | INFO     | cpuconsumptiontime: 36574 s
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | nevents: 400
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | neventsw: 0
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | pid: 1239936
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | pgrp: 1239936
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | corecount: 12
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | event service: False
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | sizes: {0: 2396514, 1: 2397222, 2: 2397421, 13: 2397421, 23: 2397477, 33: 2397711, 34: 2397895, 10155: 2426302, 10158: 2435345, 10236: 2435459}
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | --------------------------------------------------
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | 
[2025-06-05 19:46:18] 2025-06-05 19:45:59,772 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,791 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 19:46:18] 2025-06-05 19:45:59,792 | INFO     | job 6678363840 has completed (purged errors)
[2025-06-05 19:46:18] 2025-06-05 19:45:59,793 | INFO     | overall cleanup function is called
[2025-06-05 19:46:18] 2025-06-05 19:46:00,806 | INFO     | --- collectZombieJob: --- 10, [1239936]
[2025-06-05 19:46:18] 2025-06-05 19:46:00,807 | INFO     | zombie collector waiting for pid 1239936
[2025-06-05 19:46:18] 2025-06-05 19:46:00,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 19:46:18] 2025-06-05 19:46:00,807 | INFO     | collected zombie processes
[2025-06-05 19:46:18] 2025-06-05 19:46:00,807 | INFO     | will attempt to kill all subprocesses of pid=1239936
[2025-06-05 19:46:18] 2025-06-05 19:46:00,983 | INFO     | process IDs to be killed: [1239936] (in reverse order)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,031 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 19:46:18] 2025-06-05 19:46:01,033 | INFO     | did not find any defunct processes belonging to 1239936
[2025-06-05 19:46:18] 2025-06-05 19:46:01,039 | INFO     | did not find any defunct processes belonging to 1239936
[2025-06-05 19:46:18] 2025-06-05 19:46:01,039 | INFO     | ready for new job
[2025-06-05 19:46:18] 2025-06-05 19:46:01,040 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 19:46:18] 2025-06-05 19:46:01,041 | INFO     | **************************************
[2025-06-05 19:46:18] 2025-06-05 19:46:01,041 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 19:46:18] 2025-06-05 19:46:01,041 | INFO     | **************************************
[2025-06-05 19:46:18] 2025-06-05 19:46:01,041 | INFO     | 
[2025-06-05 19:46:18] 2025-06-05 19:46:01,059 | INFO     | architecture information:
[2025-06-05 19:46:18] 2025-06-05 19:46:01,067 | INFO     | executing command: cat /etc/os-release
[2025-06-05 19:46:18] 2025-06-05 19:46:01,107 | INFO     | cat /etc/os-release:
[2025-06-05 19:46:18] NAME="CentOS Linux"
[2025-06-05 19:46:18] VERSION="7 (Core)"
[2025-06-05 19:46:18] ID="centos"
[2025-06-05 19:46:18] ID_LIKE="rhel fedora"
[2025-06-05 19:46:18] VERSION_ID="7"
[2025-06-05 19:46:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 19:46:18] ANSI_COLOR="0;31"
[2025-06-05 19:46:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 19:46:18] HOME_URL="https://www.centos.org/"
[2025-06-05 19:46:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 19:46:18] 
[2025-06-05 19:46:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 19:46:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 19:46:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 19:46:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 19:46:18] 
[2025-06-05 19:46:18] 2025-06-05 19:46:01,107 | INFO     | **************************************
[2025-06-05 19:46:18] 2025-06-05 19:46:01,611 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2025-06-05 19:46:18] 2025-06-05 19:46:01,671 | INFO     | sufficient remaining disk space (30376198144 B)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 19:46:18] 2025-06-05 19:46:01,671 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 19:46:18] 2025-06-05 19:46:01,671 | INFO     | update_server=False
[2025-06-05 19:46:18] 2025-06-05 19:46:01,671 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:46:18] 2025-06-05 19:46:01,674 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,675 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 19:46:18] 2025-06-05 19:46:01,675 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 19:46:18] 2025-06-05 19:46:01,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 19:46:18] 2025-06-05 19:46:01,778 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-05 19:46:18] 2025-06-05 19:46:01,779 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-05 19:46:18] 2025-06-05 19:46:01,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 19:46:18] 2025-06-05 19:46:01,779 | INFO     | will abort loop
[2025-06-05 19:46:18] 2025-06-05 19:46:01,786 | INFO     | all job control threads have been joined
[2025-06-05 19:46:18] 2025-06-05 19:46:02,083 | INFO     | all payload control threads have been joined
[2025-06-05 19:46:18] 2025-06-05 19:46:02,217 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 19:46:18] 2025-06-05 19:46:02,242 | INFO     | all data control threads have been joined
[2025-06-05 19:46:18] 2025-06-05 19:46:02,675 | INFO     | [job] retrieve thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:02,675 | INFO     | [job] queue monitor thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:02,783 | INFO     | [job] job monitor thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:02,791 | INFO     | [job] control thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,067 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,091 | INFO     | [payload] control thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,143 | INFO     | [data] copytool_in thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,191 | INFO     | [job] validate thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,247 | INFO     | [data] control thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,414 | INFO     | [payload] failed_post thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,554 | INFO     | [payload] validate_post thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:03,794 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:04,022 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:04,222 | INFO     | [data] copytool_out thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:04,390 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 19:46:18] 2025-06-05 19:46:08,406 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:11,726 | INFO     | job.realtimelogging is not enabled
[2025-06-05 19:46:18] 2025-06-05 19:46:12,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 19:46:18] 2025-06-05 19:46:12,974 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140497888900928)>', '<ExcThread(monitor, started 140497372837632)>']
[2025-06-05 19:46:18] 2025-06-05 19:46:13,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 19:46:18] 2025-06-05 19:46:13,735 | INFO     | [monitor] control thread has ended
[2025-06-05 19:46:18] 2025-06-05 19:46:17,998 | INFO     | all workflow threads have been joined
[2025-06-05 19:46:18] 2025-06-05 19:46:17,999 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 19:46:18] 2025-06-05 19:46:17,999 | INFO     | traces error code: 0
[2025-06-05 19:46:18] 2025-06-05 19:46:17,999 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 19:46:18] 2025-06-05 19:46:18,239 [wrapper] ==== pilot stdout END ====
[2025-06-05 19:46:18] 2025-06-05 19:46:18,252 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 19:46:18] 2025-06-05 19:46:18,254 [wrapper] pilotpid: 1233471
[2025-06-05 19:46:18] 2025-06-05 19:46:18,255 [wrapper] Pilot exit status: 0
[2025-06-05 19:46:18] 2025-06-05 19:46:18,303 [wrapper] pandaids: 6678363840
[2025-06-05 19:46:18] 2025-06-05 19:46:18,330 [wrapper] cleanup supervisor_pilot 1285584 1233472
[2025-06-05 19:46:18] 2025-06-05 19:46:18,332 [wrapper] Test setup, not cleaning
[2025-06-05 19:46:18] 2025-06-05 19:46:18,334 [wrapper] apfmon messages muted
[2025-06-05 19:46:18] 2025-06-05 19:46:18,336 [wrapper] ==== wrapper stdout END ====
[2025-06-05 19:46:18] 2025-06-05 19:46:18,338 [wrapper] ==== wrapper stderr END ====
[2025-06-05 19:46:18]  *** Error codes and diagnostics ***
[2025-06-05 19:46:18]     "exeErrorCode": 0,
[2025-06-05 19:46:18]     "exeErrorDiag": "",
[2025-06-05 19:46:18]     "pilotErrorCode": 0,
[2025-06-05 19:46:18]     "pilotErrorDiag": "",
[2025-06-05 19:46:18]  *** Listing of results directory ***
[2025-06-05 19:46:18] total 395752
[2025-06-05 19:46:18] -rw-r--r-- 1 boinc boinc    495897 Jun  4 04:58 pilot3.tar.gz
[2025-06-05 19:46:18] -rwx------ 1 boinc boinc     37140 Jun  4 05:55 runpilot2-wrapper.sh
[2025-06-05 19:46:18] -rw-r--r-- 1 boinc boinc      5111 Jun  4 05:55 queuedata.json
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc       100 Jun  5 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 19:46:18] -rwxr-xr-x 1 boinc boinc      7986 Jun  5 16:53 run_atlas
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc       105 Jun  5 16:53 job.xml
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc      9357 Jun  5 16:53 init_data.xml
[2025-06-05 19:46:18] -rw-r--r-- 2 boinc boinc 218048813 Jun  5 16:53 EVNT.45006593._002150.pool.root.1
[2025-06-05 19:46:18] -rw-r--r-- 2 boinc boinc    508879 Jun  5 16:53 input.tar.gz
[2025-06-05 19:46:18] drwxrwx--x 2 boinc boinc      4096 Jun  5 16:53 shared
[2025-06-05 19:46:18] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:53 start_atlas.sh
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc         0 Jun  5 16:53 boinc_lockfile
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc      2525 Jun  5 16:53 pandaJob.out
[2025-06-05 19:46:18] -rw------- 1 boinc boinc    983229 Jun  5 16:54 agis_schedconf.cvmfs.json
[2025-06-05 19:46:18] -rw------- 1 boinc boinc   1598969 Jun  5 16:54 agis_ddmendpoints.agis.ALL.json
[2025-06-05 19:46:18] drwx------ 4 boinc boinc      4096 Jun  5 16:54 pilot3
[2025-06-05 19:46:18] -rw------- 1 boinc boinc 180570486 Jun  5 19:43 HITS.45006595._053715.pool.root.1
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc       530 Jun  5 19:44 boinc_task_state.xml
[2025-06-05 19:46:18] -rw------- 1 boinc boinc      1025 Jun  5 19:44 memory_monitor_summary.json
[2025-06-05 19:46:18] -rw------- 1 boinc boinc    406083 Jun  5 19:44 log.45006595._053715.job.log.tgz.1
[2025-06-05 19:46:18] -rw------- 1 boinc boinc        95 Jun  5 19:45 pilot_heartbeat.json
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc      8192 Jun  5 19:45 boinc_mmap_file
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc        28 Jun  5 19:45 wrapper_checkpoint.txt
[2025-06-05 19:46:18] -rw------- 1 boinc boinc      7668 Jun  5 19:45 heartbeat.json
[2025-06-05 19:46:18] -rw------- 1 boinc boinc      4757 Jun  5 19:46 pilotlog.txt
[2025-06-05 19:46:18] -rw------- 1 boinc boinc    992220 Jun  5 19:46 log.45006595._053715.job.log.1
[2025-06-05 19:46:18] -rw------- 1 boinc boinc       357 Jun  5 19:46 output.list
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc       620 Jun  5 19:46 runtime_log
[2025-06-05 19:46:18] -rw------- 1 boinc boinc   1413120 Jun  5 19:46 result.tar.gz
[2025-06-05 19:46:18] -rw------- 1 boinc boinc       651 Jun  5 19:46 wiDLDmiGwg7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmoaKDm00hNBn.diag
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc      8949 Jun  5 19:46 runtime_log.err
[2025-06-05 19:46:18] -rw-rw-r-- 1 boinc boinc     21235 Jun  5 19:46 stderr.txt
[2025-06-05 19:46:19] HITS file was successfully produced:
[2025-06-05 19:46:19] -rw------- 1 boinc boinc 180570486 Jun  5 19:43 shared/HITS.pool.root.1
[2025-06-05 19:46:19]  *** Contents of shared directory: ***
[2025-06-05 19:46:19] total 391184
[2025-06-05 19:46:19] -rw-r--r-- 2 boinc boinc 218048813 Jun  5 16:53 ATLAS.root_0
[2025-06-05 19:46:19] -rw-r--r-- 2 boinc boinc    508879 Jun  5 16:53 input.tar.gz
[2025-06-05 19:46:19] -rw-r--r-- 2 boinc boinc     15093 Jun  5 16:53 start_atlas.sh
[2025-06-05 19:46:19] -rw------- 1 boinc boinc 180570486 Jun  5 19:43 HITS.pool.root.1
[2025-06-05 19:46:19] -rw------- 1 boinc boinc   1413120 Jun  5 19:46 result.tar.gz
19:46:20 (1229862): run_atlas exited; CPU time 36650.141677
19:46:20 (1229862): called boinc_finish(0)

</stderr_txt>
]]>

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