Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:38:45 (3753421): wrapper (7.7.26015): starting
06:38:45 (3753421): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:38:45] Arguments: --nthreads 8
[2025-06-04 06:38:45] Threads: 8
[2025-06-04 06:38:45] Checking for CVMFS
[2025-06-04 06:38:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:38:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:38:45] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:38:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:38:45] 2.12.6.0 912492 23189 430088 146777 2 66 28507990 40960001 13112 16776704 0 111283988 99.717 81521229 26930 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 06:38:45] CVMFS is ok
[2025-06-04 06:38:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:38:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:38:45] Further information can be found at the LHC@home message board.
[2025-06-04 06:38:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:38:45] Checking for apptainer binary...
[2025-06-04 06:38:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:38:45] Running /usr/bin/apptainer --version
[2025-06-04 06:38:45] apptainer version 1.4.1-1.el9
[2025-06-04 06:38:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:38:45] c7-10-12.aglt2.org
[2025-06-04 06:38:45] apptainer works
[2025-06-04 06:38:45] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:38:45] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:38:45] Starting ATLAS job with PandaID=6678247060
[2025-06-04 06:38:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:41:29]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:41:29]  lfn=log.45006595._050388.job.log.tgz.1
[2025-06-04 07:41:29]  mtime=0
[2025-06-04 07:41:29]  protocol_id=None
[2025-06-04 07:41:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:41:29]  replicas=None
[2025-06-04 07:41:29]  scope=mc23_13p6TeV
[2025-06-04 07:41:29]  status=None
[2025-06-04 07:41:29]  status_code=0
[2025-06-04 07:41:29]  storage_token=
[2025-06-04 07:41:29]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678247060/log.45006595._050388.job.log.tgz.1
[2025-06-04 07:41:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/d7/log.45006595._050388.job.log.tgz.1
[2025-06-04 07:41:29]  workdir=None
[2025-06-04 07:41:29] ]
[2025-06-04 07:41:29] 2025-06-04 11:40:49,687 | INFO     | transferring file log.45006595._050388.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678247060/log.45006595._050388.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 07:41:29] 2025-06-04 11:40:49,687 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678247060/log.45006595._050388.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._050388.job
[2025-06-04 07:41:29] 2025-06-04 11:40:49,704 | INFO     | adding to output.list: log.45006595._050388.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0c/d7/log.45006595._050388.job.log.tg
[2025-06-04 07:41:29] 2025-06-04 11:40:49,704 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:41:29] 2025-06-04 11:40:49,704 | INFO     | summary of transferred files:
[2025-06-04 07:41:29] 2025-06-04 11:40:49,704 | INFO     |  -- lfn=log.45006595._050388.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:41:29] 2025-06-04 11:40:49,704 | INFO     | stage-out finished correctly
[2025-06-04 07:41:29] 2025-06-04 11:40:49,756 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | job 6678247060 has state=finished
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | preparing for final server update for job 6678247060 in state='finished'
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:41:29] 2025-06-04 11:40:51,953 | INFO     | job 6678247060 has finished - writing final server update
[2025-06-04 07:41:29] 2025-06-04 11:40:51,954 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:41:29] 2025-06-04 11:40:51,955 | INFO     | executing command: lscpu
[2025-06-04 07:41:29] 2025-06-04 11:40:52,017 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:41:29] 2025-06-04 11:40:52,892 | WARNING  | process 3767395 can no longer be monitored (due to stat problems) - aborting
[2025-06-04 07:41:29] 2025-06-04 11:40:52,892 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678247060/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:41:29] 2025-06-04 11:40:53,126 | INFO     | number of running child processes to parent process 3767395: 1
[2025-06-04 07:41:29] 2025-06-04 11:40:53,126 | INFO     | maximum number of monitored processes: 6
[2025-06-04 07:41:29] 2025-06-04 11:40:55,629 | INFO     | monitor loop #277: job 0:6678247060 is in state 'finished'
[2025-06-04 07:41:29] 2025-06-04 11:40:55,629 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,305 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 07:41:29] 2025-06-04 11:40:56,309 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3156.7746718750013
[2025-06-04 07:41:29] 2025-06-04 11:40:56,319 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678247060/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,319 | INFO     | extracted standard info from prmon json
[2025-06-04 07:41:29] 2025-06-04 11:40:56,319 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:41:29] 2025-06-04 11:40:56,319 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:41:29] 2025-06-04 11:40:56,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:41:29] 2025-06-04 11:40:56,320 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | sum of square deviations: 48810217.5
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | sum of deviations: -1125084884.5
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | mean x: 1749035483.5
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | mean y: 2264628.1296296297
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | -- intersect: 40317868321.96687
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | intersect: 40317868321.96687
[2025-06-04 07:41:29] 2025-06-04 11:40:56,321 | INFO     | chi2: 0.6650086922167628
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | -- intersect: 40317868321.96687
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | current memory leak: -23.05 B/s (using 54 data points, chi2=0.67)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | could have reported an average CPU frequency of 3159 MHz (6 samples)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | ..............................
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . Timing measurements:
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . get job = 0 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . initial setup = 2 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . payload setup = 6 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . stage-in = 0 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . payload execution = 3687 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . stage-out = 0 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,322 | INFO     | . log creation = 0 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,323 | INFO     | ..............................
[2025-06-04 07:41:29] 2025-06-04 11:40:56,400 | INFO     | 
[2025-06-04 07:41:29] 2025-06-04 11:40:56,400 | INFO     | job summary report
[2025-06-04 07:41:29] 2025-06-04 11:40:56,400 | INFO     | --------------------------------------------------
[2025-06-04 07:41:29] 2025-06-04 11:40:56,400 | INFO     | PanDA job id: 6678247060
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | task id: 45006595
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | errors: (none)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | pilot state: finished 
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | transexitcode: 0
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | exeerrorcode: 0
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | exeerrordiag: 
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | exitcode: 0
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | exitmsg: OK
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | cpuconsumptiontime: 24592 s
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | nevents: 400
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | neventsw: 0
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | pid: 3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | pgrp: 3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | corecount: 8
[2025-06-04 07:41:29] 2025-06-04 11:40:56,401 | INFO     | event service: False
[2025-06-04 07:41:29] 2025-06-04 11:40:56,402 | INFO     | sizes: {0: 2405298, 1: 2405553, 5: 2405815, 12: 2405871, 3697: 2431741, 3699: 2440866, 3705: 2441004}
[2025-06-04 07:41:29] 2025-06-04 11:40:56,403 | INFO     | --------------------------------------------------
[2025-06-04 07:41:29] 2025-06-04 11:40:56,403 | INFO     | 
[2025-06-04 07:41:29] 2025-06-04 11:40:56,403 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:41:29] 2025-06-04 11:40:56,420 | INFO     | job 6678247060 has completed (purged errors)
[2025-06-04 07:41:29] 2025-06-04 11:40:56,421 | INFO     | overall cleanup function is called
[2025-06-04 07:41:29] 2025-06-04 11:40:57,428 | INFO     | --- collectZombieJob: --- 10, [3767395]
[2025-06-04 07:41:29] 2025-06-04 11:40:57,428 | INFO     | zombie collector waiting for pid 3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:57,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:41:29] 2025-06-04 11:40:57,428 | INFO     | collected zombie processes
[2025-06-04 07:41:29] 2025-06-04 11:40:57,428 | INFO     | will attempt to kill all subprocesses of pid=3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:57,686 | INFO     | process IDs to be killed: [3767395] (in reverse order)
[2025-06-04 07:41:29] 2025-06-04 11:40:57,813 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:41:29] 2025-06-04 11:40:57,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:41:29] 2025-06-04 11:40:57,825 | INFO     | did not find any defunct processes belonging to 3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:57,834 | INFO     | did not find any defunct processes belonging to 3767395
[2025-06-04 07:41:29] 2025-06-04 11:40:57,834 | INFO     | ready for new job
[2025-06-04 07:41:29] 2025-06-04 11:40:57,834 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:41:29] 2025-06-04 11:40:57,835 | INFO     | ***************************************
[2025-06-04 07:41:29] 2025-06-04 11:40:57,835 | INFO     | ***  PanDA Pilot version 3.10.3.82  ***
[2025-06-04 07:41:29] 2025-06-04 11:40:57,835 | INFO     | ***************************************
[2025-06-04 07:41:29] 2025-06-04 11:40:57,835 | INFO     | 
[2025-06-04 07:41:29] 2025-06-04 11:40:57,849 | INFO     | architecture information:
[2025-06-04 07:41:29] 2025-06-04 11:40:57,850 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:41:29] 2025-06-04 11:40:57,861 | INFO     | cat /etc/os-release:
[2025-06-04 07:41:29] NAME="CentOS Linux"
[2025-06-04 07:41:29] VERSION="7 (Core)"
[2025-06-04 07:41:29] ID="centos"
[2025-06-04 07:41:29] ID_LIKE="rhel fedora"
[2025-06-04 07:41:29] VERSION_ID="7"
[2025-06-04 07:41:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:41:29] ANSI_COLOR="0;31"
[2025-06-04 07:41:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:41:29] HOME_URL="https://www.centos.org/"
[2025-06-04 07:41:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:41:29] 
[2025-06-04 07:41:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:41:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:41:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:41:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:41:29] 
[2025-06-04 07:41:29] 2025-06-04 11:40:57,861 | INFO     | ***************************************
[2025-06-04 07:41:29] 2025-06-04 11:40:58,364 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 07:41:29] 2025-06-04 11:40:58,386 | INFO     | sufficient remaining disk space (85968551936 B)
[2025-06-04 07:41:29] 2025-06-04 11:40:58,386 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:41:29] 2025-06-04 11:40:58,386 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:41:29] 2025-06-04 11:40:58,386 | INFO     | update_server=False
[2025-06-04 07:41:29] 2025-06-04 11:40:58,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:41:29] 2025-06-04 11:40:58,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:41:29] 2025-06-04 11:40:58,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:41:29] 2025-06-04 11:40:58,540 | INFO     | all payload control threads have been joined
[2025-06-04 07:41:29] 2025-06-04 11:40:58,845 | INFO     | all job control threads have been joined
[2025-06-04 07:41:29] 2025-06-04 11:40:59,045 | INFO     | all data control threads have been joined
[2025-06-04 07:41:29] 2025-06-04 11:40:59,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:41:29] 2025-06-04 11:40:59,139 | INFO     | aborting loop
[2025-06-04 07:41:29] 2025-06-04 11:40:59,392 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,393 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,546 | INFO     | [payload] control thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,614 | INFO     | [job] validate thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,697 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,726 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,850 | INFO     | [job] control thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,955 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:40:59,986 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:00,051 | INFO     | [data] control thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:00,123 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:00,144 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:00,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:41:29] 2025-06-04 11:41:00,392 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:00,620 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:04,319 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:09,270 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:41:29] 2025-06-04 11:41:10,271 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:41:29] 2025-06-04 11:41:11,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140685391087424)>', '<ExcThread(monitor, started 140685042759424)>']
[2025-06-04 07:41:29] 2025-06-04 11:41:16,348 | INFO     | all workflow threads have been joined
[2025-06-04 07:41:29] 2025-06-04 11:41:16,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:41:29] 2025-06-04 11:41:16,348 | INFO     | traces error code: 0
[2025-06-04 07:41:29] 2025-06-04 11:41:16,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:41:29] 2025-06-04 11:41:29,613 | INFO     | PID=3758114 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-04 07:41:29] 2025-06-04 11:41:29,614 | INFO     | .. there are 22 such processes running
[2025-06-04 07:41:29] 2025-06-04 11:41:29,614 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:41:29] 2025-06-04 11:41:29,614 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:41:29] 2025-06-04 11:41:29,614 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:41:29] 2025-06-04 11:41:29,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:41:29] 2025-06-04 11:41:29,615 | INFO     | [monitor] control thread has ended
[2025-06-04 07:41:29] 2025-06-04 11:41:29,731 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:41:29] 2025-06-04 11:41:29,734 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:41:29] 2025-06-04 11:41:29,738 [wrapper] pilotpid: 3758114
[2025-06-04 07:41:29] 2025-06-04 11:41:29,741 [wrapper] Pilot exit status: 0
[2025-06-04 07:41:29] 2025-06-04 11:41:29,755 [wrapper] pandaids: 6678247060
[2025-06-04 07:41:29] 2025-06-04 11:41:29,843 [wrapper] cleanup supervisor_pilot 3991113 3758115
[2025-06-04 07:41:29] 2025-06-04 11:41:29,847 [wrapper] Test setup, not cleaning
[2025-06-04 07:41:29] 2025-06-04 11:41:29,850 [wrapper] apfmon messages muted
[2025-06-04 07:41:29] 2025-06-04 11:41:29,853 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:41:29] 2025-06-04 11:41:29,856 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:41:29]  *** Error codes and diagnostics ***
[2025-06-04 07:41:29]     "exeErrorCode": 0,
[2025-06-04 07:41:29]     "exeErrorDiag": "",
[2025-06-04 07:41:29]     "pilotErrorCode": 0,
[2025-06-04 07:41:29]     "pilotErrorDiag": "",
[2025-06-04 07:41:29]  *** Listing of results directory ***
[2025-06-04 07:41:29] total 390816
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas    549845 Jun  2 05:40 pilot3.tar.gz
[2025-06-04 07:41:29] -rwx------. 1 boincer umatlas     37140 Jun  3 22:13 runpilot2-wrapper.sh
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas      5111 Jun  3 22:13 queuedata.json
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas       100 Jun  4 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:41:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 06:38 run_atlas
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas       105 Jun  4 06:38 job.xml
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas 217502106 Jun  4 06:38 EVNT.45006593._002020.pool.root.1
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:38 start_atlas.sh
[2025-06-04 07:41:29] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 06:38 shared
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas    564113 Jun  4 06:38 input.tar.gz
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas         0 Jun  4 06:38 boinc_lockfile
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 06:38 pandaJob.out
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas    986812 Jun  4 06:38 agis_schedconf.cvmfs.json
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas   1603667 Jun  4 06:38 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:41:29] drwx------. 6 boincer umatlas      4096 Jun  4 06:38 pilot3
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas      6897 Jun  4 07:37 init_data.xml
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas 177374859 Jun  4 07:40 HITS.45006595._050388.pool.root.1
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas       529 Jun  4 07:40 boinc_task_state.xml
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas      1028 Jun  4 07:40 memory_monitor_summary.json
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas    300950 Jun  4 07:40 log.45006595._050388.job.log.tgz.1
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas      7699 Jun  4 07:40 heartbeat.json
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas        27 Jun  4 07:41 wrapper_checkpoint.txt
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 07:41 boinc_mmap_file
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas       823 Jun  4 07:41 pilotlog.txt
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas        95 Jun  4 07:41 pilot_heartbeat.json
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas    385360 Jun  4 07:41 log.45006595._050388.job.log.1
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas       357 Jun  4 07:41 output.list
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas       620 Jun  4 07:41 runtime_log
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas    706560 Jun  4 07:41 result.tar.gz
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 07:41 runtime_log.err
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas       652 Jun  4 07:41 15fNDmWosg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMqmKDmhvvwXm.diag
[2025-06-04 07:41:29] -rw-r--r--. 1 boincer umatlas     21655 Jun  4 07:41 stderr.txt
[2025-06-04 07:41:29] HITS file was successfully produced:
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas 177374859 Jun  4 07:40 shared/HITS.pool.root.1
[2025-06-04 07:41:29]  *** Contents of shared directory: ***
[2025-06-04 07:41:29] total 386896
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas 217502106 Jun  4 06:38 ATLAS.root_0
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:38 start_atlas.sh
[2025-06-04 07:41:29] -rw-r--r--. 2 boincer umatlas    564113 Jun  4 06:38 input.tar.gz
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas 177374859 Jun  4 07:40 HITS.pool.root.1
[2025-06-04 07:41:29] -rw-------. 1 boincer umatlas    706560 Jun  4 07:41 result.tar.gz
07:41:31 (3753421): run_atlas exited; CPU time 24635.684394
07:41:31 (3753421): called boinc_finish(0)

</stderr_txt>
]]>

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