Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:39:27 (2026734): wrapper (7.7.26015): starting
06:39:27 (2026734): wrapper: running run_atlas (--nthreads 8)
[2025-06-04 06:39:27] Arguments: --nthreads 8
[2025-06-04 06:39:27] Threads: 8
[2025-06-04 06:39:27] Checking for CVMFS
[2025-06-04 06:39:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-06-04 06:39:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-06-04 06:39:27] Running cvmfs_config stat atlas.cern.ch
[2025-06-04 06:39:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-06-04 06:39:27] 2.12.6.0 861369 32690 494552 146777 0 66 35716904 40960001 13888 16776704 0 153983058 99.658 143574990 26111 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-06-04 06:39:27] CVMFS is ok
[2025-06-04 06:39:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 06:39:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 06:39:27] Further information can be found at the LHC@home message board.
[2025-06-04 06:39:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 06:39:27] Checking for apptainer binary...
[2025-06-04 06:39:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-06-04 06:39:27] Running /usr/bin/apptainer --version
[2025-06-04 06:39:27] apptainer version 1.4.1-1.el9
[2025-06-04 06:39:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 06:39:27] c7-13-33.aglt2.org
[2025-06-04 06:39:27] apptainer works
[2025-06-04 06:39:27] Set ATHENA_PROC_NUMBER=8
[2025-06-04 06:39:27] Set ATHENA_CORE_NUMBER=8
[2025-06-04 06:39:27] Starting ATLAS job with PandaID=6678363680
[2025-06-04 06:39:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 07:41:08]  *** The last 200 lines of the pilot log: ***
[2025-06-04 07:41:08]  filetype=log
[2025-06-04 07:41:08]  guid=3ea0f56b-c7e8-43b3-ba7d-de8f2fd69e1c
[2025-06-04 07:41:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-06-04 07:41:08]  is_altstaged=None
[2025-06-04 07:41:08]  is_tar=False
[2025-06-04 07:41:08]  lfn=log.45006595._053555.job.log.tgz.1
[2025-06-04 07:41:08]  mtime=0
[2025-06-04 07:41:08]  protocol_id=None
[2025-06-04 07:41:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-06-04 07:41:08]  replicas=None
[2025-06-04 07:41:08]  scope=mc23_13p6TeV
[2025-06-04 07:41:08]  status=None
[2025-06-04 07:41:08]  status_code=0
[2025-06-04 07:41:08]  storage_token=
[2025-06-04 07:41:08]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6678363680/log.45006595._053555.job.log.tgz.1
[2025-06-04 07:41:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e1/fd/log.45006595._053555.job.log.tgz.1
[2025-06-04 07:41:08]  workdir=None
[2025-06-04 07:41:08] ]
[2025-06-04 07:41:08] 2025-06-04 11:40:43,853 | INFO     | transferring file log.45006595._053555.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6678363680/log.45006595._053555.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-06-04 07:41:08] 2025-06-04 11:40:43,853 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6678363680/log.45006595._053555.job.log.tgz.1 /tmp/boinchome/slots/1/log.45006595._053555.job
[2025-06-04 07:41:08] 2025-06-04 11:40:43,877 | INFO     | adding to output.list: log.45006595._053555.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e1/fd/log.45006595._053555.job.log.tg
[2025-06-04 07:41:08] 2025-06-04 11:40:43,878 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-06-04 07:41:08] 2025-06-04 11:40:43,878 | INFO     | summary of transferred files:
[2025-06-04 07:41:08] 2025-06-04 11:40:43,878 | INFO     |  -- lfn=log.45006595._053555.job.log.tgz.1, status_code=0, status=transferred
[2025-06-04 07:41:08] 2025-06-04 11:40:43,878 | INFO     | stage-out finished correctly
[2025-06-04 07:41:08] 2025-06-04 11:40:45,597 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-06-04 07:41:08] 2025-06-04 11:40:45,674 | INFO     | job 6678363680 has state=finished
[2025-06-04 07:41:08] 2025-06-04 11:40:45,674 | INFO     | preparing for final server update for job 6678363680 in state='finished'
[2025-06-04 07:41:08] 2025-06-04 11:40:45,675 | INFO     | this job has now completed (state=finished)
[2025-06-04 07:41:08] 2025-06-04 11:40:45,675 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-06-04 07:41:08] 2025-06-04 11:40:45,675 | INFO     | log transfer has been attempted: DONE
[2025-06-04 07:41:08] 2025-06-04 11:40:45,675 | INFO     | job 6678363680 has finished - writing final server update
[2025-06-04 07:41:08] 2025-06-04 11:40:45,676 | INFO     | total number of processed events: 400 (read)
[2025-06-04 07:41:08] 2025-06-04 11:40:45,692 | INFO     | executing command: lscpu
[2025-06-04 07:41:08] 2025-06-04 11:40:45,772 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-04 07:41:08] 2025-06-04 11:40:46,036 | INFO     | monitor loop #275: job 0:6678363680 is in state 'finished'
[2025-06-04 07:41:08] 2025-06-04 11:40:46,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:41:08] 2025-06-04 11:40:48,540 | INFO     | monitor loop #276: job 0:6678363680 is in state 'finished'
[2025-06-04 07:41:08] 2025-06-04 11:40:48,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,375 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-04 07:41:08] 2025-06-04 11:40:49,375 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6678363680/memory_monitor_summary.json (trf name=prmon)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,376 | INFO     | extracted standard info from prmon json
[2025-06-04 07:41:08] 2025-06-04 11:40:49,376 | INFO     | extracted standard memory fields from prmon json
[2025-06-04 07:41:08] 2025-06-04 11:40:49,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-04 07:41:08] 2025-06-04 11:40:49,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-04 07:41:08] 2025-06-04 11:40:49,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-04 07:41:08] 2025-06-04 11:40:49,378 | INFO     | fitting pss+swap vs Time
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | sum of square deviations: 46147842.0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | sum of deviations: -356287763.00000066
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | mean x: 1749035495.0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | mean y: 2275224.4716981133
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | -- intersect: 13505830686.96004
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | intersect: 13505830686.96004
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | chi2: 0.833128950016465
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | -- intersect: 13505830686.96004
[2025-06-04 07:41:08] 2025-06-04 11:40:49,379 | INFO     | current memory leak: -7.72 B/s (using 53 data points, chi2=0.83)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | ..............................
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . Timing measurements:
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . get job = 0 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . initial setup = 2 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . payload setup = 6 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . stage-in = 0 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . payload execution = 3640 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . stage-out = 0 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | . log creation = 0 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,380 | INFO     | ..............................
[2025-06-04 07:41:08] 2025-06-04 11:40:49,458 | INFO     | 
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | job summary report
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | --------------------------------------------------
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | PanDA job id: 6678363680
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | task id: 45006595
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | errors: (none)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | pilot state: finished 
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | transexitcode: 0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | exeerrorcode: 0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | exeerrordiag: 
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | exitcode: 0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | exitmsg: OK
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | cpuconsumptiontime: 24064 s
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | nevents: 400
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | neventsw: 0
[2025-06-04 07:41:08] 2025-06-04 11:40:49,459 | INFO     | pid: 2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | pgrp: 2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | corecount: 8
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | event service: False
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | sizes: {0: 2404356, 1: 2405212, 5: 2405418, 12: 2405474, 3650: 2431216, 3651: 2440157, 3653: 2440341, 3656: 2440511}
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | --------------------------------------------------
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | 
[2025-06-04 07:41:08] 2025-06-04 11:40:49,460 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-06-04 07:41:08] 2025-06-04 11:40:49,484 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,485 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | job 6678363680 has completed (purged errors)
[2025-06-04 07:41:08] 2025-06-04 11:40:49,486 | INFO     | overall cleanup function is called
[2025-06-04 07:41:08] 2025-06-04 11:40:50,495 | INFO     | --- collectZombieJob: --- 10, [2039104]
[2025-06-04 07:41:08] 2025-06-04 11:40:50,495 | INFO     | zombie collector waiting for pid 2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:50,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-04 07:41:08] 2025-06-04 11:40:50,495 | INFO     | collected zombie processes
[2025-06-04 07:41:08] 2025-06-04 11:40:50,495 | INFO     | will attempt to kill all subprocesses of pid=2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:50,727 | INFO     | process IDs to be killed: [2039104] (in reverse order)
[2025-06-04 07:41:08] 2025-06-04 11:40:50,820 | WARNING  | found no corresponding commands to process id(s)
[2025-06-04 07:41:08] 2025-06-04 11:40:50,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-04 07:41:08] 2025-06-04 11:40:50,831 | INFO     | did not find any defunct processes belonging to 2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:50,838 | INFO     | did not find any defunct processes belonging to 2039104
[2025-06-04 07:41:08] 2025-06-04 11:40:50,839 | INFO     | ready for new job
[2025-06-04 07:41:08] 2025-06-04 11:40:50,839 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-04 07:41:08] 2025-06-04 11:40:50,840 | INFO     | **************************************
[2025-06-04 07:41:08] 2025-06-04 11:40:50,840 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-04 07:41:08] 2025-06-04 11:40:50,840 | INFO     | **************************************
[2025-06-04 07:41:08] 2025-06-04 11:40:50,840 | INFO     | 
[2025-06-04 07:41:08] 2025-06-04 11:40:50,855 | INFO     | architecture information:
[2025-06-04 07:41:08] 2025-06-04 11:40:50,856 | INFO     | executing command: cat /etc/os-release
[2025-06-04 07:41:08] 2025-06-04 11:40:50,872 | INFO     | cat /etc/os-release:
[2025-06-04 07:41:08] NAME="CentOS Linux"
[2025-06-04 07:41:08] VERSION="7 (Core)"
[2025-06-04 07:41:08] ID="centos"
[2025-06-04 07:41:08] ID_LIKE="rhel fedora"
[2025-06-04 07:41:08] VERSION_ID="7"
[2025-06-04 07:41:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-04 07:41:08] ANSI_COLOR="0;31"
[2025-06-04 07:41:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-04 07:41:08] HOME_URL="https://www.centos.org/"
[2025-06-04 07:41:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-04 07:41:08] 
[2025-06-04 07:41:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-04 07:41:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-04 07:41:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-04 07:41:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-04 07:41:08] 
[2025-06-04 07:41:08] 2025-06-04 11:40:50,872 | INFO     | **************************************
[2025-06-04 07:41:08] 2025-06-04 11:40:51,376 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-06-04 07:41:08] 2025-06-04 11:40:51,388 | INFO     | sufficient remaining disk space (86016786432 B)
[2025-06-04 07:41:08] 2025-06-04 11:40:51,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-04 07:41:08] 2025-06-04 11:40:51,389 | INFO     | current server update state: UPDATING_FINAL
[2025-06-04 07:41:08] 2025-06-04 11:40:51,389 | INFO     | update_server=False
[2025-06-04 07:41:08] 2025-06-04 11:40:51,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-04 07:41:08] 2025-06-04 11:40:51,389 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-04 07:41:08] 2025-06-04 11:40:51,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:41:08] 2025-06-04 11:40:51,390 | INFO     | found 0 job(s) in 20 queues
[2025-06-04 07:41:08] 2025-06-04 11:40:51,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-04 07:41:08] 2025-06-04 11:40:51,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-04 07:41:08] 2025-06-04 11:40:51,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-04 07:41:08] 2025-06-04 11:40:51,866 | INFO     | all payload control threads have been joined
[2025-06-04 07:41:08] 2025-06-04 11:40:51,968 | INFO     | all job control threads have been joined
[2025-06-04 07:41:08] 2025-06-04 11:40:51,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-04 07:41:08] 2025-06-04 11:40:52,048 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-04 07:41:08] 2025-06-04 11:40:52,049 | INFO     | aborting loop
[2025-06-04 07:41:08] 2025-06-04 11:40:52,190 | INFO     | all data control threads have been joined
[2025-06-04 07:41:08] 2025-06-04 11:40:52,394 | INFO     | [job] retrieve thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:52,396 | INFO     | [job] queue monitor thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:52,770 | INFO     | [payload] execute_payloads thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:52,871 | INFO     | [payload] control thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:52,973 | INFO     | [job] control thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,013 | INFO     | [data] copytool_in thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,049 | INFO     | [job] validate thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,054 | INFO     | [job] job monitor thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,059 | INFO     | [payload] failed_post thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,196 | INFO     | [data] control thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,201 | INFO     | [job] create_data_payload thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,465 | INFO     | [payload] validate_pre thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,806 | INFO     | [payload] validate_post thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:53,979 | INFO     | [data] copytool_out thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:40:55,685 | INFO     | [data] queue_monitor thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:41:01,688 | INFO     | job.realtimelogging is not enabled
[2025-06-04 07:41:08] 2025-06-04 11:41:02,694 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-04 07:41:08] 2025-06-04 11:41:02,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140443539744576)>', '<ExcThread(monitor, started 140443174020864)>']
[2025-06-04 07:41:08] 2025-06-04 11:41:03,446 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-04 07:41:08] 2025-06-04 11:41:03,446 | INFO     | [monitor] control thread has ended
[2025-06-04 07:41:08] 2025-06-04 11:41:07,759 | INFO     | all workflow threads have been joined
[2025-06-04 07:41:08] 2025-06-04 11:41:07,759 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-04 07:41:08] 2025-06-04 11:41:07,759 | INFO     | traces error code: 0
[2025-06-04 07:41:08] 2025-06-04 11:41:07,760 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-04 07:41:08] 2025-06-04 11:41:07,883 [wrapper] ==== pilot stdout END ====
[2025-06-04 07:41:08] 2025-06-04 11:41:07,886 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-04 07:41:08] 2025-06-04 11:41:07,889 [wrapper] pilotpid: 2030319
[2025-06-04 07:41:08] 2025-06-04 11:41:07,892 [wrapper] Pilot exit status: 0
[2025-06-04 07:41:08] 2025-06-04 11:41:07,905 [wrapper] pandaids: 6678363680
[2025-06-04 07:41:08] 2025-06-04 11:41:07,991 [wrapper] cleanup supervisor_pilot 2232055 2030320
[2025-06-04 07:41:08] 2025-06-04 11:41:07,995 [wrapper] Test setup, not cleaning
[2025-06-04 07:41:08] 2025-06-04 11:41:07,998 [wrapper] apfmon messages muted
[2025-06-04 07:41:08] 2025-06-04 11:41:08,001 [wrapper] ==== wrapper stdout END ====
[2025-06-04 07:41:08] 2025-06-04 11:41:08,003 [wrapper] ==== wrapper stderr END ====
[2025-06-04 07:41:08]  *** Error codes and diagnostics ***
[2025-06-04 07:41:08]     "exeErrorCode": 0,
[2025-06-04 07:41:08]     "exeErrorDiag": "",
[2025-06-04 07:41:08]     "pilotErrorCode": 0,
[2025-06-04 07:41:08]     "pilotErrorDiag": "",
[2025-06-04 07:41:08]  *** Listing of results directory ***
[2025-06-04 07:41:08] total 391056
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas    495897 Jun  4 00:58 pilot3.tar.gz
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas      5111 Jun  4 01:31 queuedata.json
[2025-06-04 07:41:08] -rwx------. 1 boincer umatlas     37140 Jun  4 01:31 runpilot2-wrapper.sh
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas       100 Jun  4 06:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-04 07:41:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jun  4 06:39 run_atlas
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas       105 Jun  4 06:39 job.xml
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas 215986814 Jun  4 06:39 EVNT.45006593._002143.pool.root.1
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:39 start_atlas.sh
[2025-06-04 07:41:08] drwxrwx--x. 2 boincer umatlas      4096 Jun  4 06:39 shared
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 06:39 input.tar.gz
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas         0 Jun  4 06:39 boinc_lockfile
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas      2525 Jun  4 06:39 pandaJob.out
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas    986812 Jun  4 06:39 agis_schedconf.cvmfs.json
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas   1603667 Jun  4 06:39 agis_ddmendpoints.agis.ALL.json
[2025-06-04 07:41:08] drwx------. 4 boincer umatlas      4096 Jun  4 06:39 pilot3
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas      6896 Jun  4 07:39 init_data.xml
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas 179261889 Jun  4 07:40 HITS.45006595._053555.pool.root.1
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas       530 Jun  4 07:40 boinc_task_state.xml
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas      1022 Jun  4 07:40 memory_monitor_summary.json
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas    305182 Jun  4 07:40 log.45006595._053555.job.log.tgz.1
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas        95 Jun  4 07:40 pilot_heartbeat.json
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas      7680 Jun  4 07:40 heartbeat.json
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas      8192 Jun  4 07:41 boinc_mmap_file
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas        27 Jun  4 07:41 wrapper_checkpoint.txt
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas      4548 Jun  4 07:41 pilotlog.txt
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas    373298 Jun  4 07:41 log.45006595._053555.job.log.1
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas       357 Jun  4 07:41 output.list
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas       620 Jun  4 07:41 runtime_log
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas    696320 Jun  4 07:41 result.tar.gz
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas      8659 Jun  4 07:41 runtime_log.err
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas       651 Jun  4 07:41 anoNDmmtvg7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFQnKDmiE61Ym.diag
[2025-06-04 07:41:08] -rw-r--r--. 1 boincer umatlas     21219 Jun  4 07:41 stderr.txt
[2025-06-04 07:41:08] HITS file was successfully produced:
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas 179261889 Jun  4 07:40 shared/HITS.pool.root.1
[2025-06-04 07:41:08]  *** Contents of shared directory: ***
[2025-06-04 07:41:08] total 387192
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas 215986814 Jun  4 06:39 ATLAS.root_0
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas     15093 Jun  4 06:39 start_atlas.sh
[2025-06-04 07:41:08] -rw-r--r--. 2 boincer umatlas    508886 Jun  4 06:39 input.tar.gz
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas 179261889 Jun  4 07:40 HITS.pool.root.1
[2025-06-04 07:41:08] -rw-------. 1 boincer umatlas    696320 Jun  4 07:41 result.tar.gz
07:41:10 (2026734): run_atlas exited; CPU time 24107.097418
07:41:10 (2026734): called boinc_finish(0)

</stderr_txt>
]]>

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